Wall clock time and date at job start Tue Mar 9 2021 15:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47287 * 2 1 4 4 C 1.38122 * 119.97652 * 265.25332 * 3 2 1 5 5 C 1.38756 * 119.94535 * 180.31714 * 4 3 2 6 6 O 1.35906 * 120.05238 * 179.68249 * 5 4 3 7 7 C 1.42903 * 116.99708 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46761 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46815 * 180.02562 * 8 7 6 10 10 O 1.42896 * 109.46935 * 180.02562 * 9 8 7 11 11 Si 1.63107 * 113.99964 * 179.97438 * 10 9 8 12 12 C 1.86301 * 109.47181 * 300.00129 * 11 10 9 13 13 C 1.86302 * 109.46822 * 59.99654 * 11 10 9 14 14 C 1.86296 * 109.47224 * 180.02562 * 11 10 9 15 15 C 1.52993 * 109.47071 * 59.99932 * 14 11 10 16 16 C 1.53005 * 109.46939 * 180.02562 * 14 11 10 17 17 C 1.53003 * 109.47117 * 299.99824 * 14 11 10 18 18 C 1.38702 * 119.88952 * 359.69672 * 5 4 3 19 19 C 1.38165 * 119.94596 * 0.02562 * 18 5 4 20 20 C 1.38247 * 120.05320 * 0.02562 * 19 18 5 21 21 C 1.50701 * 119.94394 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47079 * 255.00120 * 21 20 19 23 23 Si 1.86301 * 109.47149 * 14.99615 * 21 20 19 24 24 H 1.48506 * 109.47302 * 59.99966 * 23 21 20 25 25 H 1.48503 * 109.47334 * 300.00099 * 23 21 20 26 26 H 1.48500 * 109.47376 * 180.02562 * 23 21 20 27 27 H 1.08996 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47664 * 300.00225 * 1 2 3 29 29 H 1.09004 * 109.47028 * 60.00052 * 1 2 3 30 30 H 1.08992 * 109.47392 * 239.99962 * 2 1 3 31 31 H 1.09004 * 109.47028 * 119.99948 * 2 1 3 32 32 H 1.08005 * 120.02790 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.46974 * 299.99821 * 7 6 5 34 34 H 1.09002 * 109.46776 * 60.00057 * 7 6 5 35 35 H 1.08997 * 109.47314 * 300.00354 * 8 7 6 36 36 H 1.09002 * 109.47141 * 60.00633 * 8 7 6 37 37 H 1.09012 * 109.46816 * 300.00186 * 9 8 7 38 38 H 1.08999 * 109.47230 * 59.99626 * 9 8 7 39 39 H 1.09005 * 109.47381 * 59.99346 * 12 11 10 40 40 H 1.08999 * 109.47310 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47167 * 300.00000 * 12 11 10 42 42 H 1.09004 * 109.46973 * 60.00346 * 13 11 10 43 43 H 1.08999 * 109.46938 * 179.97438 * 13 11 10 44 44 H 1.08993 * 109.47364 * 300.00107 * 13 11 10 45 45 H 1.08998 * 109.47415 * 60.00336 * 15 14 11 46 46 H 1.09005 * 109.47279 * 179.97438 * 15 14 11 47 47 H 1.08999 * 109.47458 * 299.99767 * 15 14 11 48 48 H 1.08994 * 109.46903 * 60.00085 * 16 14 11 49 49 H 1.09002 * 109.46752 * 179.97438 * 16 14 11 50 50 H 1.08990 * 109.47135 * 299.99780 * 16 14 11 51 51 H 1.08999 * 109.46730 * 60.00016 * 17 14 11 52 52 H 1.08993 * 109.47266 * 180.02562 * 17 14 11 53 53 H 1.08998 * 109.47135 * 300.00705 * 17 14 11 54 54 H 1.08000 * 120.02732 * 179.97438 * 18 5 4 55 55 H 1.08000 * 119.97397 * 179.97438 * 19 18 5 56 56 H 1.09001 * 109.47380 * 134.99517 * 21 20 19 57 57 H 0.96696 * 114.00435 * 59.99627 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3557 2.0384 -1.1923 5 6 2.8244 3.3444 -1.1911 6 8 3.1494 3.9520 -2.3625 7 6 3.6259 5.2971 -2.2852 8 6 3.9386 5.8089 -3.6927 9 6 4.4493 7.2488 -3.6100 10 8 4.7408 7.7270 -4.9246 11 14 5.2956 9.2603 -4.9649 12 6 4.0175 10.4026 -4.2351 13 6 6.8699 9.3772 -3.9756 14 6 5.6323 9.7528 -6.7297 15 6 4.3391 9.6569 -7.5415 16 6 6.1533 11.1909 -6.7674 17 6 6.6818 8.8148 -7.3296 18 6 2.9611 4.0285 0.0077 19 6 2.6308 3.4083 1.1973 20 6 2.1650 2.1066 1.1935 21 6 1.8060 1.4323 2.4925 22 8 2.8255 0.4930 2.8392 23 14 1.6586 2.7133 3.8372 24 1 0.5992 3.6896 3.4770 25 1 2.9544 3.4227 3.9893 26 1 1.3055 2.0487 5.1174 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.2491 1.5034 -2.1245 33 1 2.8619 5.9275 -1.8303 34 1 4.5309 5.3276 -1.6784 35 1 4.7026 5.1783 -4.1473 36 1 3.0338 5.7783 -4.2998 37 1 3.6854 7.8797 -3.1552 38 1 5.3541 7.2791 -3.0029 39 1 3.8200 10.1146 -3.2025 40 1 4.3884 11.4272 -4.2616 41 1 3.0963 10.3342 -4.8139 42 1 7.6178 8.7089 -4.4025 43 1 7.2409 10.4017 -4.0029 44 1 6.6725 9.0892 -2.9431 45 1 3.5914 10.3251 -7.1143 46 1 4.5359 9.9454 -8.5741 47 1 3.9683 8.6322 -7.5147 48 1 7.0748 11.2587 -6.1891 49 1 6.3508 11.4788 -7.8000 50 1 5.4061 11.8593 -6.3400 51 1 6.3110 7.7902 -7.3027 52 1 6.8791 9.1031 -8.3620 53 1 7.6031 8.8830 -6.7511 54 1 3.3261 5.0450 0.0114 55 1 2.7374 3.9404 2.1311 56 1 0.8549 0.9116 2.3809 57 1 3.7008 0.8873 2.9548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_18527724.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:06:32 Heat of formation + Delta-G solvation = -157.345359 kcal Electronic energy + Delta-G solvation = -29417.343952 eV Core-core repulsion = 25514.704936 eV Total energy + Delta-G solvation = -3902.639016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.219 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42882 -39.60251 -38.19812 -37.16817 -36.83252 -34.87616 -33.63826 -31.72024 -30.38939 -29.38172 -29.06407 -27.84640 -27.38354 -27.16319 -25.94445 -24.82891 -23.06945 -22.55758 -21.46628 -20.41804 -18.80687 -18.41183 -17.69263 -17.45479 -17.19227 -16.64434 -16.14069 -15.98279 -15.94751 -15.75973 -15.21609 -15.15878 -14.86737 -14.78750 -14.72026 -14.53111 -14.22984 -14.11303 -13.94637 -13.84937 -13.53648 -13.39885 -13.34782 -13.17808 -13.06790 -12.96147 -12.93298 -12.76421 -12.56681 -12.39422 -12.32905 -12.18980 -12.07681 -11.98132 -11.81205 -11.79581 -11.70533 -11.63240 -11.36270 -11.35107 -11.27863 -10.32294 -10.31213 -10.05967 -9.83471 -9.16641 0.28780 0.30192 1.19814 1.43221 1.43573 1.53964 1.78342 1.92227 2.12888 2.16321 2.53978 2.62540 3.58789 3.67932 3.77530 3.87886 3.89124 4.00176 4.09130 4.11706 4.12182 4.14666 4.23828 4.34388 4.35926 4.43313 4.45263 4.46477 4.51315 4.54515 4.67338 4.74455 4.74952 4.77224 4.78169 4.79476 4.82175 4.82315 4.96743 4.99605 5.05554 5.06380 5.08731 5.09104 5.11184 5.12753 5.21211 5.27994 5.30726 5.34514 5.39656 5.40433 5.44348 5.54608 5.60535 5.62735 5.64581 5.76267 6.40694 6.74802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.019 4.019 4 C -0.167 4.167 5 C 0.128 3.872 6 O -0.330 6.330 7 C 0.053 3.947 8 C -0.121 4.121 9 C 0.081 3.919 10 O -0.641 6.641 11 Si 1.317 2.683 12 C -0.518 4.518 13 C -0.517 4.517 14 C -0.385 4.385 15 C -0.137 4.137 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.213 4.213 19 C -0.089 4.089 20 C -0.162 4.162 21 C -0.074 4.074 22 O -0.549 6.549 23 Si 0.976 3.024 24 H -0.260 1.260 25 H -0.246 1.246 26 H -0.275 1.275 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.054 0.946 52 H 0.047 0.953 53 H 0.061 0.939 54 H 0.150 0.850 55 H 0.139 0.861 56 H 0.118 0.882 57 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 2.684 2.289 3.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.019 4.019 4 C -0.185 4.185 5 C 0.082 3.918 6 O -0.244 6.244 7 C -0.021 4.021 8 C -0.158 4.158 9 C 0.005 3.995 10 O -0.601 6.601 11 Si 1.447 2.553 12 C -0.619 4.619 13 C -0.619 4.619 14 C -0.428 4.428 15 C -0.194 4.194 16 C -0.198 4.198 17 C -0.194 4.194 18 C -0.232 4.232 19 C -0.107 4.107 20 C -0.163 4.163 21 C -0.185 4.185 22 O -0.356 6.356 23 Si 0.801 3.199 24 H -0.184 1.184 25 H -0.170 1.170 26 H -0.200 1.200 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.066 0.934 53 H 0.080 0.920 54 H 0.168 0.832 55 H 0.157 0.843 56 H 0.136 0.864 57 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.008 2.606 2.522 3.627 hybrid contribution 0.690 0.718 -0.535 1.130 sum 0.697 3.324 1.987 3.935 Atomic orbital electron populations 1.21759 0.93992 1.02586 1.02098 1.20668 0.96710 0.91565 1.03969 1.19683 0.94721 0.96311 0.91167 1.20512 1.05578 0.93335 0.99114 1.19145 0.94944 0.92590 0.85083 1.86039 1.79788 1.29605 1.28939 1.22891 1.00151 0.80287 0.98799 1.21485 1.03063 0.95915 0.95365 1.21999 1.00888 0.94430 0.82162 1.85323 1.85616 1.55823 1.33323 0.76173 0.63230 0.52113 0.63788 1.27091 1.14086 1.13028 1.07724 1.27087 1.19378 1.05131 1.10321 1.25962 0.98490 0.99572 1.18730 1.21540 0.96398 1.01729 0.99761 1.21599 1.01326 0.94670 1.02159 1.21541 0.98307 0.98872 1.00710 1.21395 1.08043 1.02150 0.91575 1.21111 0.96823 0.94224 0.98497 1.20166 1.05228 0.95013 0.95877 1.24957 0.94923 1.00249 0.98345 1.86471 1.21199 1.36318 1.91654 0.85325 0.81176 0.76654 0.76757 1.18408 1.16951 1.20021 0.91282 0.92225 0.92852 0.90724 0.89366 0.85109 0.90178 0.90145 0.90646 0.90659 0.90729 0.90697 0.90766 0.90363 0.91250 0.91241 0.90362 0.90752 0.92045 0.93418 0.92646 0.91747 0.93237 0.91751 0.92648 0.93416 0.92036 0.83200 0.84310 0.86384 0.76363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.08 9.78 71.98 0.70 0.79 16 2 C -0.09 -0.09 5.43 29.84 0.16 0.08 16 3 C -0.02 -0.06 5.13 -19.88 -0.10 -0.16 16 4 C -0.17 -0.76 9.62 22.37 0.22 -0.54 16 5 C 0.13 0.53 6.69 22.50 0.15 0.68 16 6 O -0.33 -1.38 10.14 -92.49 -0.94 -2.32 16 7 C 0.05 -0.13 4.74 71.98 0.34 0.21 16 8 C -0.12 0.20 5.95 30.59 0.18 0.38 16 9 C 0.08 -0.32 5.12 71.98 0.37 0.05 16 10 O -0.64 0.25 8.56 -148.98 -1.28 -1.02 16 11 Si 1.32 -4.34 8.45 68.60 0.58 -3.76 16 12 C -0.52 1.66 8.50 113.37 0.96 2.62 16 13 C -0.52 1.68 8.50 113.37 0.96 2.64 16 14 C -0.39 0.26 0.53 -10.79 -0.01 0.25 16 15 C -0.14 -0.08 7.85 71.98 0.56 0.48 16 16 C -0.14 0.23 7.85 71.98 0.56 0.79 16 17 C -0.14 -0.08 7.85 71.98 0.56 0.49 16 18 C -0.21 -0.17 9.04 22.36 0.20 0.03 16 19 C -0.09 -0.04 8.65 22.25 0.19 0.16 16 20 C -0.16 -0.24 5.26 -19.85 -0.10 -0.34 16 21 C -0.07 0.05 1.92 71.24 0.14 0.19 16 22 O -0.55 0.02 11.89 -148.98 -1.77 -1.75 16 23 Si 0.98 -1.40 25.49 68.60 1.75 0.35 16 24 H -0.26 -0.05 7.11 99.48 0.71 0.66 16 25 H -0.25 0.66 6.73 99.48 0.67 1.33 16 26 H -0.27 -0.58 7.11 99.48 0.71 0.13 16 27 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 -0.07 6.67 -2.38 -0.02 -0.08 16 29 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 30 H 0.07 0.02 8.05 -2.39 -0.02 0.01 16 31 H 0.09 0.15 6.42 -2.38 -0.02 0.14 16 32 H 0.13 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.08 -0.44 7.66 -2.39 -0.02 -0.46 16 34 H 0.08 -0.45 7.66 -2.39 -0.02 -0.47 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.07 -0.55 7.21 -2.38 -0.02 -0.57 16 38 H 0.07 -0.56 7.22 -2.39 -0.02 -0.58 16 39 H 0.07 -0.34 7.48 -2.38 -0.02 -0.36 16 40 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 41 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 42 H 0.07 -0.15 7.79 -2.38 -0.02 -0.17 16 43 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 44 H 0.07 -0.35 7.48 -2.39 -0.02 -0.37 16 45 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 46 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.05 0.08 7.97 -2.39 -0.02 0.06 16 48 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 49 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 51 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 52 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 53 H 0.06 -0.06 7.80 -2.39 -0.02 -0.08 16 54 H 0.15 -0.63 6.30 -2.91 -0.02 -0.65 16 55 H 0.14 -0.44 4.88 -2.91 -0.01 -0.45 16 56 H 0.12 -0.17 5.91 -2.39 -0.01 -0.19 16 57 H 0.39 -2.38 8.70 -74.06 -0.64 -3.03 16 Total: 0.00 -11.03 438.82 5.30 -5.74 By element: Atomic # 1 Polarization: -6.90 SS G_CDS: 0.89 Total: -6.01 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.06 Total: 8.78 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -3.98 Total: -5.10 kcal Atomic # 14 Polarization: -5.74 SS G_CDS: 2.33 Total: -3.41 kcal Total: -11.03 5.30 -5.74 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_18527724.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.610 kcal (2) G-P(sol) polarization free energy of solvation -11.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds