Wall clock time and date at job start Tue Mar 9 2021 15:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.47040 * 2 1 4 4 C 1.38130 * 119.96955 * 265.25360 * 3 2 1 5 5 C 1.38754 * 119.93901 * 180.25049 * 4 3 2 6 6 O 1.35894 * 120.05313 * 179.74293 * 5 4 3 7 7 C 1.42906 * 117.00187 * 179.73128 * 6 5 4 8 8 C 1.50693 * 109.47463 * 180.02562 * 7 6 5 9 9 C 1.38233 * 120.00207 * 89.99418 * 8 7 6 10 10 C 1.38234 * 120.00037 * 179.72405 * 9 8 7 11 11 C 1.38234 * 120.00240 * 0.26327 * 10 9 8 12 12 Si 1.86795 * 120.00205 * 180.02562 * 11 10 9 13 13 C 1.86297 * 109.47192 * 89.99958 * 12 11 10 14 14 C 1.86301 * 109.47283 * 209.99980 * 12 11 10 15 15 C 1.86301 * 109.47118 * 329.99845 * 12 11 10 16 16 C 1.38238 * 119.99693 * 359.97438 * 11 10 9 17 17 C 1.38234 * 120.00067 * 0.02562 * 16 11 10 18 18 C 1.38710 * 119.89182 * 359.47921 * 5 4 3 19 19 C 1.38169 * 119.94203 * 0.26882 * 18 5 4 20 20 C 1.38252 * 120.05802 * 0.02562 * 19 18 5 21 21 C 1.50692 * 119.94626 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47250 * 104.99920 * 21 20 19 23 23 Si 1.86307 * 109.47284 * 345.00184 * 21 20 19 24 24 H 1.48501 * 109.47133 * 59.99541 * 23 21 20 25 25 H 1.48493 * 109.47282 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46836 * 300.00170 * 23 21 20 27 27 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46669 * 300.00170 * 1 2 3 29 29 H 1.08999 * 109.46644 * 59.99799 * 1 2 3 30 30 H 1.08999 * 109.47321 * 240.00208 * 2 1 3 31 31 H 1.08999 * 109.47300 * 119.99830 * 2 1 3 32 32 H 1.07995 * 120.02877 * 0.02806 * 4 3 2 33 33 H 1.09000 * 109.46902 * 60.00273 * 7 6 5 34 34 H 1.09001 * 109.46622 * 300.00169 * 7 6 5 35 35 H 1.08002 * 120.00157 * 0.02562 * 9 8 7 36 36 H 1.07999 * 120.00009 * 180.28389 * 10 9 8 37 37 H 1.08999 * 109.47282 * 60.00138 * 13 12 11 38 38 H 1.08997 * 109.47709 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47505 * 300.00288 * 13 12 11 40 40 H 1.08998 * 109.47270 * 60.00089 * 14 12 11 41 41 H 1.08997 * 109.47416 * 180.02562 * 14 12 11 42 42 H 1.09006 * 109.46995 * 300.00168 * 14 12 11 43 43 H 1.09002 * 109.46976 * 60.00696 * 15 12 11 44 44 H 1.09005 * 109.47230 * 179.97438 * 15 12 11 45 45 H 1.08998 * 109.47233 * 299.99787 * 15 12 11 46 46 H 1.08001 * 119.99624 * 180.02562 * 16 11 10 47 47 H 1.07999 * 120.00008 * 180.02562 * 17 16 11 48 48 H 1.07995 * 120.03345 * 180.29458 * 18 5 4 49 49 H 1.07998 * 119.97444 * 180.02562 * 19 18 5 50 50 H 1.08999 * 109.47290 * 225.00609 * 21 20 19 51 51 H 0.96697 * 114.00235 * 300.00457 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3557 2.0384 -1.1925 5 6 2.8231 3.3449 -1.1913 6 8 3.1469 3.9529 -2.3627 7 6 3.6158 5.3007 -2.2863 8 6 3.9224 5.8054 -3.6727 9 6 2.9385 6.4339 -4.4127 10 6 3.2213 6.9020 -5.6823 11 6 4.4866 6.7366 -6.2140 12 14 4.8690 7.3697 -7.9293 13 6 5.4833 9.1251 -7.8207 14 6 6.1804 6.2999 -8.7081 15 6 3.3246 7.3154 -8.9699 16 6 5.4692 6.1036 -5.4758 17 6 5.1863 5.6356 -4.2063 18 6 2.9541 4.0311 0.0070 19 6 2.6244 3.4106 1.1966 20 6 2.1647 2.1068 1.1934 21 6 1.8053 1.4327 2.4923 22 8 0.3833 1.3612 2.6144 23 14 2.5020 2.4136 3.9148 24 1 1.9340 3.7856 3.8952 25 1 2.1483 1.7490 5.1947 26 1 3.9797 2.4879 3.7879 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2483 1.5037 -2.1246 33 1 4.5196 5.3369 -1.6780 34 1 2.8476 5.9274 -1.8334 35 1 1.9501 6.5637 -3.9972 36 1 2.4539 7.3971 -6.2587 37 1 6.3869 9.1569 -7.2119 38 1 5.7069 9.4945 -8.8215 39 1 4.7160 9.7511 -7.3650 40 1 5.8210 5.2729 -8.7717 41 1 6.4039 6.6696 -9.7088 42 1 7.0840 6.3317 -8.0992 43 1 2.5574 7.9415 -8.5143 44 1 3.5477 7.6853 -9.9707 45 1 2.9653 6.2884 -9.0335 46 1 6.4578 5.9748 -5.8911 47 1 5.9541 5.1415 -3.6294 48 1 3.3132 5.0496 0.0101 49 1 2.7258 3.9446 2.1299 50 1 2.2223 0.4257 2.5067 51 1 -0.0557 2.2227 2.6090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:06:53 Heat of formation + Delta-G solvation = -64.987840 kcal Electronic energy + Delta-G solvation = -26833.900799 eV Core-core repulsion = 23207.657192 eV Total energy + Delta-G solvation = -3626.243607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.172 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52637 -40.24222 -39.18859 -37.15993 -34.82711 -33.29263 -31.90468 -31.68464 -30.47353 -29.44766 -28.30543 -28.27861 -27.53299 -26.12375 -24.86758 -23.50836 -23.11671 -22.29596 -21.34693 -18.90801 -18.43416 -17.74626 -17.16491 -17.08961 -16.61587 -16.17544 -15.92706 -15.76085 -15.54590 -15.10532 -14.73031 -14.60632 -14.35926 -14.24168 -14.12171 -14.05519 -13.92680 -13.83080 -13.74743 -13.63229 -13.45476 -13.14563 -13.12752 -13.02859 -12.97629 -12.80034 -12.45225 -12.26378 -12.17560 -12.10837 -11.98912 -11.74935 -11.62506 -11.36079 -10.93226 -10.79304 -10.76891 -10.26702 -9.86990 -9.83071 -9.71074 -9.21062 0.13736 0.24998 0.27071 0.49731 1.19890 1.43300 1.53799 1.82354 1.91964 1.98286 2.01416 2.28995 2.59385 2.65650 2.99761 3.54665 3.60001 3.71676 3.78490 3.84382 3.87074 4.04691 4.12667 4.21033 4.21418 4.25168 4.41370 4.50727 4.52853 4.54298 4.66513 4.69179 4.83812 4.83945 4.84246 4.87780 4.88317 4.88816 4.89901 4.96095 4.97910 5.07372 5.13702 5.14419 5.24025 5.26143 5.38447 5.54128 5.54624 5.57691 5.58357 5.61506 5.67152 5.69568 5.72908 6.09991 6.34056 6.74098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.017 4.017 4 C -0.166 4.166 5 C 0.126 3.874 6 O -0.325 6.325 7 C 0.099 3.901 8 C -0.104 4.104 9 C -0.122 4.122 10 C -0.104 4.104 11 C -0.373 4.373 12 Si 1.128 2.872 13 C -0.461 4.461 14 C -0.463 4.463 15 C -0.463 4.463 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.214 4.214 19 C -0.087 4.087 20 C -0.160 4.160 21 C -0.070 4.070 22 O -0.543 6.543 23 Si 0.978 3.022 24 H -0.249 1.249 25 H -0.274 1.274 26 H -0.264 1.264 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.140 0.860 47 H 0.127 0.873 48 H 0.145 0.855 49 H 0.139 0.861 50 H 0.122 0.878 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 2.587 -0.795 2.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.018 4.018 4 C -0.185 4.185 5 C 0.081 3.919 6 O -0.240 6.240 7 C 0.025 3.975 8 C -0.104 4.104 9 C -0.141 4.141 10 C -0.121 4.121 11 C -0.412 4.412 12 Si 1.315 2.685 13 C -0.568 4.568 14 C -0.570 4.570 15 C -0.570 4.570 16 C -0.121 4.121 17 C -0.141 4.141 18 C -0.233 4.233 19 C -0.105 4.105 20 C -0.160 4.160 21 C -0.181 4.181 22 O -0.350 6.350 23 Si 0.803 3.197 24 H -0.173 1.173 25 H -0.199 1.199 26 H -0.188 1.188 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.163 0.837 49 H 0.157 0.843 50 H 0.139 0.861 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.298 2.343 -0.203 2.686 hybrid contribution -0.179 0.404 -0.124 0.460 sum 1.119 2.747 -0.327 2.985 Atomic orbital electron populations 1.21880 0.93887 1.02220 1.02907 1.20604 0.97034 0.91207 1.03314 1.19694 0.94407 0.96536 0.91120 1.20488 1.05618 0.93244 0.99144 1.19168 0.95047 0.92640 0.85029 1.86143 1.79932 1.28801 1.29079 1.21749 1.00185 0.80514 0.95021 1.19637 0.94907 1.00436 0.95456 1.21382 0.98796 0.98439 0.95435 1.21400 0.97635 0.98270 0.94831 1.28085 0.95349 1.01726 1.16083 0.77162 0.65779 0.65269 0.60316 1.26266 1.06298 1.19478 1.04744 1.26287 1.12903 1.10023 1.07791 1.26287 1.16158 1.04512 1.10042 1.21400 1.00293 0.96690 0.93757 1.21384 0.96406 0.99519 0.96764 1.21360 1.08237 1.01935 0.91758 1.21105 0.96832 0.94260 0.98317 1.20180 1.04891 0.94953 0.96018 1.24868 0.86307 1.07270 0.99618 1.86474 1.17087 1.35570 1.95827 0.85301 0.79331 0.78621 0.76429 1.17285 1.19931 1.18787 0.92231 0.90057 0.93865 0.90976 0.89756 0.85328 0.90033 0.90009 0.85503 0.84224 0.91352 0.90604 0.91340 0.91443 0.90581 0.90896 0.90887 0.90581 0.91442 0.84235 0.85524 0.83718 0.84317 0.86064 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.85 71.98 0.71 0.46 16 2 C -0.08 -0.12 5.55 29.85 0.17 0.05 16 3 C -0.02 -0.06 5.13 -19.88 -0.10 -0.17 16 4 C -0.17 -0.98 9.62 22.37 0.22 -0.77 16 5 C 0.13 0.76 6.69 22.51 0.15 0.91 16 6 O -0.33 -2.35 10.12 -92.35 -0.93 -3.28 16 7 C 0.10 0.22 4.86 71.23 0.35 0.57 16 8 C -0.10 -0.43 5.51 -19.87 -0.11 -0.54 16 9 C -0.12 -0.41 9.70 22.27 0.22 -0.19 16 10 C -0.10 -0.13 9.29 22.27 0.21 0.07 16 11 C -0.37 0.01 4.59 22.27 0.10 0.12 16 12 Si 1.13 -6.14 12.32 68.60 0.85 -5.30 16 13 C -0.46 1.72 8.65 113.37 0.98 2.70 16 14 C -0.46 1.80 8.53 113.37 0.97 2.77 16 15 C -0.46 1.81 8.53 113.37 0.97 2.78 16 16 C -0.10 -0.14 9.29 22.27 0.21 0.07 16 17 C -0.12 -0.41 9.70 22.27 0.22 -0.20 16 18 C -0.21 -0.58 9.04 22.37 0.20 -0.38 16 19 C -0.09 -0.13 8.65 22.26 0.19 0.06 16 20 C -0.16 -0.30 5.26 -19.85 -0.10 -0.40 16 21 C -0.07 0.07 2.07 71.23 0.15 0.22 16 22 O -0.54 0.51 10.17 -148.98 -1.51 -1.01 16 23 Si 0.98 -1.19 25.49 68.60 1.75 0.56 16 24 H -0.25 0.51 6.73 99.48 0.67 1.18 16 25 H -0.27 -0.59 7.11 99.48 0.71 0.11 16 26 H -0.26 -0.23 7.11 99.48 0.71 0.47 16 27 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.08 0.18 5.32 -2.39 -0.01 0.17 16 29 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 0.05 8.05 -2.39 -0.02 0.03 16 31 H 0.08 -0.01 6.43 -2.39 -0.02 -0.03 16 32 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 33 H 0.08 -0.03 7.61 -2.39 -0.02 -0.05 16 34 H 0.08 -0.04 7.60 -2.39 -0.02 -0.06 16 35 H 0.13 0.11 8.06 -2.91 -0.02 0.08 16 36 H 0.14 -0.43 7.43 -2.91 -0.02 -0.45 16 37 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 38 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 39 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.07 -0.32 7.69 -2.38 -0.02 -0.33 16 43 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 44 H 0.08 -0.33 7.96 -2.38 -0.02 -0.35 16 45 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 46 H 0.14 -0.42 7.43 -2.91 -0.02 -0.44 16 47 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 48 H 0.15 -0.19 6.30 -2.91 -0.02 -0.21 16 49 H 0.14 -0.28 4.88 -2.91 -0.01 -0.29 16 50 H 0.12 -0.28 6.53 -2.39 -0.02 -0.29 16 51 H 0.39 -2.56 8.70 -74.06 -0.64 -3.20 16 Total: 0.00 -12.37 407.42 6.81 -5.57 By element: Atomic # 1 Polarization: -5.67 SS G_CDS: 0.99 Total: -4.68 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.68 Total: 8.14 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: -2.45 Total: -4.29 kcal Atomic # 14 Polarization: -7.33 SS G_CDS: 2.59 Total: -4.74 kcal Total: -12.37 6.81 -5.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.421 kcal (2) G-P(sol) polarization free energy of solvation -12.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds