Wall clock time and date at job start Tue Mar 9 2021 15:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46753 * 2 1 4 4 C 1.52994 * 109.46901 * 240.00047 * 2 1 3 5 5 Si 1.86302 * 109.47206 * 119.99793 * 2 1 3 6 6 C 1.86298 * 109.47198 * 299.99861 * 5 2 1 7 7 C 1.86307 * 109.46847 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46906 * 59.99905 * 5 2 1 9 9 C 1.42904 * 113.99711 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.46825 * 180.02562 * 9 8 5 11 11 O 1.42897 * 109.47635 * 65.00315 * 10 9 8 12 12 C 1.35938 * 117.00400 * 179.97438 * 11 10 9 13 13 C 1.38676 * 120.01827 * 359.97438 * 12 11 10 14 14 C 1.38359 * 119.94555 * 180.02562 * 13 12 11 15 15 F 1.35093 * 120.00918 * 180.02562 * 14 13 12 16 16 C 1.38651 * 119.98472 * 0.02562 * 14 13 12 17 17 F 1.35095 * 119.98016 * 179.97438 * 16 14 13 18 18 C 1.38415 * 120.04227 * 359.97438 * 16 14 13 19 19 C 1.38158 * 120.05168 * 359.97438 * 18 16 14 20 20 C 1.50698 * 119.99358 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47410 * 105.00113 * 20 19 18 22 22 Si 1.86304 * 109.47095 * 344.99877 * 20 19 18 23 23 H 1.48500 * 109.46793 * 60.00199 * 22 20 19 24 24 H 1.48498 * 109.47630 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47292 * 300.00343 * 22 20 19 26 26 H 1.09002 * 109.47232 * 299.99962 * 1 2 3 27 27 H 1.09002 * 109.47403 * 59.99775 * 1 2 3 28 28 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46760 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46917 * 299.99942 * 3 2 1 31 31 H 1.08997 * 109.47673 * 60.00096 * 3 2 1 32 32 H 1.09003 * 109.47203 * 299.99708 * 4 2 1 33 33 H 1.09003 * 109.47421 * 59.99659 * 4 2 1 34 34 H 1.09007 * 109.47118 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47347 * 179.97438 * 6 5 2 36 36 H 1.09003 * 109.47375 * 300.00138 * 6 5 2 37 37 H 1.09007 * 109.47146 * 60.00111 * 6 5 2 38 38 H 1.08998 * 109.46527 * 299.99966 * 7 5 2 39 39 H 1.08995 * 109.47486 * 59.99806 * 7 5 2 40 40 H 1.08994 * 109.46793 * 180.02562 * 7 5 2 41 41 H 1.08995 * 109.46913 * 60.00406 * 9 8 5 42 42 H 1.09004 * 109.47394 * 299.99873 * 9 8 5 43 43 H 1.09001 * 109.47174 * 304.99787 * 10 9 8 44 44 H 1.09005 * 109.46525 * 185.00096 * 10 9 8 45 45 H 1.07999 * 120.02825 * 0.04280 * 13 12 11 46 46 H 1.07997 * 119.96959 * 179.72811 * 18 16 14 47 47 H 1.09001 * 109.47426 * 225.00277 * 20 19 18 48 48 H 0.96697 * 114.00305 * 59.99964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8774 1.5215 8 8 1.6073 -2.4158 1.5212 9 6 2.0295 -3.1815 2.6515 10 6 1.4646 -4.5995 2.5466 11 8 2.0330 -5.2561 1.4118 12 6 1.6342 -6.5337 1.1740 13 6 0.7155 -7.1419 2.0162 14 6 0.3110 -8.4425 1.7731 15 9 -0.5842 -9.0360 2.5924 16 6 0.8248 -9.1366 0.6883 17 9 0.4302 -10.4067 0.4513 18 6 1.7417 -8.5291 -0.1519 19 6 2.1459 -7.2300 0.0887 20 6 3.1447 -6.5700 -0.8266 21 8 2.4721 -5.6305 -1.6674 22 14 3.9720 -7.8650 -1.8800 23 1 2.9482 -8.5711 -2.6914 24 1 4.9567 -7.2148 -2.7815 25 1 4.6710 -8.8413 -1.0062 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9565 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6765 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8930 -0.5139 3.9322 36 1 1.8934 1.0278 3.0423 37 1 0.4400 0.0001 3.0423 38 1 4.3777 -1.3910 0.6315 39 1 4.3771 0.1503 1.5216 40 1 4.3774 -1.3916 2.4112 41 1 1.6654 -2.7117 3.5651 42 1 3.1184 -3.2254 2.6745 43 1 0.3815 -4.5518 2.4341 44 1 1.7118 -5.1568 3.4503 45 1 0.3159 -6.6006 2.8610 46 1 2.1444 -9.0723 -0.9940 47 1 3.8962 -6.0517 -0.2311 48 1 2.0179 -4.9260 -1.1853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14425792_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:07:19 Heat of formation + Delta-G solvation = -229.799790 kcal Electronic energy + Delta-G solvation = -29822.591654 eV Core-core repulsion = 25444.515683 eV Total energy + Delta-G solvation = -4378.075971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.61774 -49.68881 -41.55602 -38.98887 -37.57719 -37.30235 -36.77721 -32.72922 -31.56422 -30.12181 -29.26116 -29.00721 -27.80372 -27.32623 -26.74012 -25.11814 -23.18331 -22.78850 -20.37309 -19.88984 -18.98034 -18.62335 -18.11793 -17.92884 -17.54549 -17.27257 -16.48915 -16.34904 -16.10842 -15.98884 -15.88513 -15.68934 -15.53407 -15.35608 -14.87719 -14.81039 -14.66007 -14.61254 -14.13762 -13.92791 -13.58440 -13.42340 -13.31159 -13.15570 -13.12468 -12.97624 -12.90960 -12.89583 -12.62910 -12.35422 -12.22457 -11.92628 -11.88451 -11.71992 -11.64869 -11.46974 -11.35141 -11.22470 -11.04806 -10.26976 -10.25889 -10.01030 -9.32829 -0.35946 -0.18105 1.18174 1.50124 1.52595 1.56535 1.83451 1.93766 1.96839 2.08915 2.18629 2.51728 2.64098 3.08966 3.27644 3.46539 3.75069 3.92569 3.94338 4.07034 4.15559 4.17087 4.18724 4.33153 4.41854 4.44702 4.48629 4.50808 4.55454 4.69864 4.74014 4.79152 4.82342 4.83930 4.84269 4.86012 4.87935 4.92467 5.04570 5.13716 5.14232 5.24498 5.35894 5.39353 5.46067 5.47018 5.54212 5.64584 5.70018 6.13540 6.69118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.330 2.670 6 C -0.521 4.521 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.073 3.927 10 C 0.040 3.960 11 O -0.296 6.296 12 C 0.175 3.825 13 C -0.210 4.210 14 C 0.103 3.897 15 F -0.132 7.132 16 C 0.016 3.984 17 F -0.140 7.140 18 C -0.093 4.093 19 C -0.132 4.132 20 C -0.079 4.079 21 O -0.548 6.548 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.237 1.237 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.180 0.820 46 H 0.159 0.841 47 H 0.100 0.900 48 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 4.158 4.490 6.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.193 4.193 5 Si 1.459 2.541 6 C -0.623 4.623 7 C -0.622 4.622 8 O -0.592 6.592 9 C -0.002 4.002 10 C -0.034 4.034 11 O -0.209 6.209 12 C 0.128 3.872 13 C -0.229 4.229 14 C 0.082 3.918 15 F -0.110 7.110 16 C -0.004 4.004 17 F -0.118 7.118 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.187 4.187 21 O -0.355 6.355 22 Si 0.840 3.160 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.160 1.160 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.197 0.803 46 H 0.176 0.824 47 H 0.118 0.882 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.958 3.052 3.306 5.385 hybrid contribution -0.947 0.744 0.933 1.523 sum 2.012 3.797 4.239 6.035 Atomic orbital electron populations 1.21535 0.94357 1.01823 1.01623 1.26017 1.00305 1.02861 1.13656 1.21612 1.01208 0.95040 1.02037 1.21530 1.00888 1.00238 0.96653 0.75926 0.62022 0.52626 0.63536 1.27139 1.06954 1.09817 1.18344 1.27152 1.25721 1.04745 1.04605 1.85397 1.79323 1.46399 1.48104 1.22389 1.00236 0.89210 0.88348 1.23495 0.99891 0.92442 0.87583 1.86168 1.64467 1.21724 1.48539 1.18436 0.91731 0.84930 0.92152 1.21319 1.02861 0.93959 1.04777 1.17553 0.91895 0.92495 0.89808 1.91538 1.65073 1.83790 1.70645 1.17627 1.02759 0.81337 0.98690 1.91509 1.89947 1.36142 1.94252 1.20975 0.96047 0.94934 0.99215 1.19640 1.02783 0.93618 0.97327 1.25190 0.96098 0.99499 0.97962 1.86671 1.71984 1.41302 1.35534 0.84419 0.78060 0.75407 0.78139 1.18761 1.19057 1.15961 0.92123 0.93809 0.92279 0.91937 0.93491 0.91835 0.92031 0.93891 0.92289 0.90553 0.90746 0.91076 0.91303 0.90827 0.90825 0.87817 0.90366 0.89657 0.87785 0.80315 0.82358 0.88231 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.17 7.85 71.98 0.56 0.73 16 2 C -0.39 0.92 0.53 -10.79 -0.01 0.91 16 3 C -0.14 0.33 7.85 71.98 0.56 0.89 16 4 C -0.14 0.11 7.85 71.98 0.56 0.68 16 5 Si 1.33 -8.01 8.45 68.60 0.58 -7.43 16 6 C -0.52 2.99 8.50 113.37 0.96 3.95 16 7 C -0.52 2.44 8.50 113.37 0.96 3.40 16 8 O -0.63 3.23 8.52 -144.35 -1.23 2.00 16 9 C 0.07 -0.68 5.51 71.98 0.40 -0.28 16 10 C 0.04 -0.36 5.12 71.98 0.37 0.01 16 11 O -0.30 1.16 9.00 -88.22 -0.79 0.37 16 12 C 0.18 -0.25 6.62 22.49 0.15 -0.10 16 13 C -0.21 0.35 9.01 22.40 0.20 0.56 16 14 C 0.10 0.38 7.30 22.40 0.16 0.55 16 15 F -0.13 -0.85 17.18 44.97 0.77 -0.07 16 16 C 0.02 0.09 7.30 22.41 0.16 0.25 16 17 F -0.14 -1.24 17.18 44.97 0.77 -0.47 16 18 C -0.09 -0.24 8.63 22.29 0.19 -0.05 16 19 C -0.13 -0.08 5.28 -19.77 -0.10 -0.18 16 20 C -0.08 0.04 2.33 71.24 0.17 0.20 16 21 O -0.55 -1.04 12.65 -148.98 -1.89 -2.92 16 22 Si 1.02 0.23 25.74 68.60 1.77 1.99 16 23 H -0.26 -0.59 6.73 99.48 0.67 0.08 16 24 H -0.27 -0.71 7.11 99.48 0.71 0.00 16 25 H -0.24 0.31 7.11 99.48 0.71 1.02 16 26 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 27 H 0.04 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.06 -0.23 7.79 -2.38 -0.02 -0.25 16 30 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 32 H 0.06 -0.06 7.97 -2.39 -0.02 -0.07 16 33 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 -0.11 7.79 -2.38 -0.02 -0.13 16 35 H 0.08 -0.58 7.48 -2.39 -0.02 -0.60 16 36 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 37 H 0.07 -0.35 7.79 -2.38 -0.02 -0.37 16 38 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 39 H 0.07 -0.32 7.79 -2.39 -0.02 -0.34 16 40 H 0.07 -0.45 7.48 -2.39 -0.02 -0.47 16 41 H 0.10 -1.45 7.21 -2.39 -0.02 -1.46 16 42 H 0.08 -0.85 7.21 -2.38 -0.02 -0.87 16 43 H 0.09 -0.82 7.66 -2.39 -0.02 -0.84 16 44 H 0.10 -1.40 7.66 -2.38 -0.02 -1.42 16 45 H 0.18 -1.33 6.30 -2.91 -0.02 -1.35 16 46 H 0.16 0.09 4.88 -2.91 -0.01 0.08 16 47 H 0.10 -0.37 7.82 -2.39 -0.02 -0.39 16 48 H 0.38 -0.73 8.61 -74.06 -0.64 -1.37 16 Total: 0.00 -11.32 392.87 6.34 -4.98 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: 1.04 Total: -9.98 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.31 Total: 11.53 kcal Atomic # 8 Polarization: 3.36 SS G_CDS: -3.91 Total: -0.55 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 1.55 Total: -0.54 kcal Atomic # 14 Polarization: -7.78 SS G_CDS: 2.35 Total: -5.43 kcal Total: -11.32 6.34 -4.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14425792_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.821 kcal (2) G-P(sol) polarization free energy of solvation -11.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds