Wall clock time and date at job start Tue Mar 9 2021 15:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46796 * 2 1 4 4 N 1.46504 * 109.47432 * 119.99674 * 2 1 3 5 5 C 1.46508 * 119.99732 * 304.67137 * 4 2 1 6 6 C 1.39666 * 119.99889 * 124.66513 * 4 2 1 7 7 C 1.38797 * 120.04451 * 174.47053 * 6 4 2 8 8 C 1.38612 * 119.87002 * 180.23033 * 7 6 4 9 9 O 1.35894 * 120.01813 * 179.74494 * 8 7 6 10 10 C 1.42900 * 116.99915 * 359.73337 * 9 8 7 11 11 C 1.53002 * 109.47030 * 179.97438 * 10 9 8 12 12 H 1.09000 * 112.84884 * 43.80659 * 11 10 9 13 13 C 1.53786 * 113.61374 * 174.99821 * 11 10 9 14 14 C 1.53780 * 87.08110 * 139.98202 * 13 11 10 15 15 H 1.08998 * 113.61678 * 89.19950 * 14 13 11 16 16 O 1.42895 * 113.61668 * 220.02215 * 14 13 11 17 17 C 1.53777 * 113.61530 * 272.49550 * 11 10 9 18 18 C 1.38778 * 119.96381 * 359.47966 * 8 7 6 19 19 C 1.50697 * 119.95391 * 180.27031 * 18 8 7 20 20 O 1.42905 * 109.47346 * 285.00241 * 19 18 8 21 21 Si 1.86298 * 109.47134 * 164.99965 * 19 18 8 22 22 C 1.38218 * 120.09129 * 0.29453 * 18 8 7 23 23 C 1.38118 * 120.12966 * 359.95402 * 22 18 8 24 24 H 1.09001 * 109.47625 * 299.99369 * 1 2 3 25 25 H 1.08997 * 109.47324 * 60.00124 * 1 2 3 26 26 H 1.09006 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47339 * 240.00248 * 2 1 3 28 28 H 1.08994 * 109.46738 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47083 * 300.00024 * 3 2 1 30 30 H 1.09001 * 109.46518 * 59.99953 * 3 2 1 31 31 H 1.08998 * 109.46838 * 269.99542 * 5 4 2 32 32 H 1.08994 * 109.47234 * 29.99522 * 5 4 2 33 33 H 1.08999 * 109.46743 * 150.00020 * 5 4 2 34 34 H 1.07998 * 120.06073 * 0.02562 * 7 6 4 35 35 H 1.09001 * 109.47179 * 59.99652 * 10 9 8 36 36 H 1.09003 * 109.47286 * 299.99600 * 10 9 8 37 37 H 1.08993 * 113.61467 * 254.53040 * 13 11 10 38 38 H 1.08996 * 113.60987 * 25.35049 * 13 11 10 39 39 H 0.96700 * 114.00116 * 180.02562 * 16 14 13 40 40 H 1.08995 * 113.61853 * 334.57096 * 17 11 10 41 41 H 1.08999 * 113.61346 * 105.47187 * 17 11 10 42 42 H 1.09004 * 109.47207 * 44.99878 * 19 18 8 43 43 H 0.96700 * 113.99226 * 300.00119 * 20 19 18 44 44 H 1.48497 * 110.00009 * 180.02562 * 21 19 18 45 45 H 1.48497 * 109.99845 * 301.31664 * 21 19 18 46 46 H 1.07996 * 119.93394 * 179.97438 * 22 18 8 47 47 H 1.07998 * 119.98020 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5821 -0.2524 2.5244 6 6 2.8998 -1.7666 1.0704 7 6 3.4528 -2.3481 2.2029 8 6 4.3309 -3.4128 2.0736 9 8 4.8781 -3.9810 3.1801 10 6 4.5085 -3.4265 4.4443 11 6 5.2181 -4.1911 5.5636 12 1 6.2675 -4.3870 5.3431 13 6 4.9832 -3.5952 6.9617 14 6 4.8738 -5.0412 7.4735 15 1 5.8286 -5.4704 7.7771 16 8 3.8467 -5.2268 8.4494 17 6 4.4468 -5.4301 6.0482 18 6 4.6466 -3.9017 0.8138 19 6 5.5965 -5.0632 0.6738 20 8 6.9337 -4.6157 0.9060 21 14 5.4672 -5.7673 -1.0462 22 6 4.0914 -3.3246 -0.3128 23 6 3.2200 -2.2602 -0.1886 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 2.2708 0.5034 2.9020 32 1 0.5800 0.1708 2.4564 33 1 1.5711 -1.1054 3.2029 34 1 3.2019 -1.9695 3.1827 35 1 3.4296 -3.5089 4.5757 36 1 4.7997 -2.3767 4.4797 37 1 5.8442 -3.0562 7.3568 38 1 4.0551 -3.0298 7.0449 39 1 3.7733 -6.1342 8.7755 40 1 3.3714 -5.3676 5.8822 41 1 4.8748 -6.3723 5.7060 42 1 5.3394 -5.8327 1.4017 43 1 7.2304 -3.9288 0.2935 44 1 6.3988 -6.9139 -1.1969 45 1 4.0740 -6.2073 -1.3114 46 1 4.3392 -3.7068 -1.2920 47 1 2.7873 -1.8113 -1.0705 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096552_11354858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:16:56 Heat of formation + Delta-G solvation = -52.948214 kcal Electronic energy + Delta-G solvation = -26351.871250 eV Core-core repulsion = 22695.851523 eV Total energy + Delta-G solvation = -3656.019727 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.182 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57729 -40.46167 -39.39166 -38.19036 -36.90374 -36.03055 -33.79862 -31.48181 -30.88336 -29.36776 -28.14491 -27.80616 -26.80133 -25.45156 -24.12940 -23.21352 -22.17735 -20.93556 -20.48376 -19.35685 -18.61142 -17.96428 -17.41094 -17.14189 -17.03610 -16.45180 -16.23337 -15.90214 -15.76682 -15.62372 -15.18109 -15.02290 -14.74787 -14.56039 -14.39074 -14.01536 -13.91719 -13.56821 -13.53268 -13.43396 -13.21803 -12.88614 -12.79370 -12.64239 -12.46635 -12.36870 -12.21400 -12.16173 -12.11767 -11.83003 -11.74332 -11.47074 -11.28194 -10.80559 -10.60274 -10.27520 -9.38900 -8.24514 -4.99149 0.43170 0.55238 1.38466 1.67913 2.00001 2.04881 2.18314 2.77539 3.24994 3.41077 3.51095 3.68573 3.72492 3.74539 3.86516 3.87712 3.99412 4.09728 4.11923 4.14415 4.19610 4.22862 4.30269 4.39721 4.43413 4.51429 4.55299 4.61172 4.65359 4.68239 4.70489 4.73187 4.73258 4.80335 4.84262 4.92374 4.93677 4.97369 5.07189 5.19148 5.24411 5.31209 5.32742 5.35984 5.49010 5.72480 6.26034 6.37192 6.56397 6.81604 6.89563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 C -0.160 4.160 4 N -0.624 5.624 5 C 0.086 3.914 6 C 0.252 3.748 7 C -0.299 4.299 8 C 0.182 3.818 9 O -0.319 6.319 10 C 0.073 3.927 11 C -0.105 4.105 12 H 0.103 0.897 13 C -0.118 4.118 14 C 0.077 3.923 15 H 0.099 0.901 16 O -0.580 6.580 17 C -0.163 4.163 18 C -0.229 4.229 19 C -0.056 4.056 20 O -0.559 6.559 21 Si 0.783 3.217 22 C -0.027 4.027 23 C -0.237 4.237 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.133 0.867 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.395 0.605 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.390 0.610 44 H -0.301 1.301 45 H -0.287 1.287 46 H 0.158 0.842 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 4.187 -2.155 4.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.334 5.334 5 C -0.057 4.057 6 C 0.148 3.852 7 C -0.323 4.323 8 C 0.135 3.865 9 O -0.232 6.232 10 C -0.002 4.002 11 C -0.124 4.124 12 H 0.121 0.879 13 C -0.155 4.155 14 C 0.018 3.982 15 H 0.117 0.883 16 O -0.388 6.388 17 C -0.201 4.201 18 C -0.232 4.232 19 C -0.165 4.165 20 O -0.366 6.366 21 Si 0.688 3.312 22 C -0.045 4.045 23 C -0.259 4.259 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.245 0.755 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.239 0.761 44 H -0.230 1.230 45 H -0.214 1.214 46 H 0.175 0.825 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.957 3.708 -2.191 4.731 hybrid contribution -0.302 -0.579 1.148 1.321 sum -2.259 3.129 -1.043 3.998 Atomic orbital electron populations 1.22165 0.94456 1.02146 1.03212 1.21250 0.94484 0.93211 0.87877 1.22154 1.01131 0.95554 1.02946 1.46809 1.47777 1.32052 1.06719 1.21705 1.00576 0.99957 0.83463 1.17742 0.87728 0.86338 0.93382 1.20772 1.08320 1.04018 0.99145 1.18707 0.90503 0.90675 0.86623 1.86120 1.66353 1.57101 1.13606 1.22850 0.99085 0.97764 0.80537 1.22281 1.00804 0.96896 0.92405 0.87853 1.23055 1.03477 0.96115 0.92894 1.23372 0.91273 0.97246 0.86318 0.88343 1.86471 1.56503 1.35828 1.60021 1.23734 1.00721 0.98416 0.97209 1.19527 1.08143 1.04509 0.91025 1.24932 0.82606 0.96993 1.11988 1.86468 1.27634 1.60999 1.61503 0.94057 0.77280 0.81927 0.77897 1.20760 0.93256 0.93427 0.97025 1.20828 1.06576 1.02301 0.96180 0.92095 0.90100 0.93035 0.88277 0.93120 0.90225 0.92540 0.93095 0.89984 0.91834 0.84965 0.91905 0.91273 0.89183 0.89326 0.75480 0.90027 0.90970 0.89893 0.76119 1.22957 1.21408 0.82508 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.70 9.08 71.98 0.65 1.35 16 2 C 0.13 -0.41 3.20 44.99 0.14 -0.27 16 3 C -0.16 0.63 9.26 71.99 0.67 1.30 16 4 N -0.62 -0.12 2.90 -698.12 -2.02 -2.15 16 5 C 0.09 -0.18 9.30 127.77 1.19 1.01 16 6 C 0.25 0.89 6.53 38.20 0.25 1.13 16 7 C -0.30 -1.60 8.15 22.49 0.18 -1.42 16 8 C 0.18 1.43 6.66 22.49 0.15 1.58 16 9 O -0.32 -2.83 9.46 -92.36 -0.87 -3.71 16 10 C 0.07 0.25 4.58 71.98 0.33 0.57 16 11 C -0.11 -0.17 4.01 -10.27 -0.04 -0.21 16 12 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 13 C -0.12 -0.01 7.47 31.12 0.23 0.22 16 14 C 0.08 0.03 5.21 31.12 0.16 0.19 16 15 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 16 O -0.58 -1.42 13.67 -148.98 -2.04 -3.46 16 17 C -0.16 -0.27 7.46 31.12 0.23 -0.04 16 18 C -0.23 -1.28 5.27 -19.74 -0.10 -1.38 16 19 C -0.06 -0.31 2.37 71.23 0.17 -0.14 16 20 O -0.56 -3.42 12.88 -148.98 -1.92 -5.34 16 21 Si 0.78 0.95 29.91 68.60 2.05 3.00 16 22 C -0.03 -0.03 8.65 22.24 0.19 0.16 16 23 C -0.24 -0.33 9.31 22.42 0.21 -0.12 16 24 H 0.06 -0.27 6.53 -2.39 -0.02 -0.28 16 25 H 0.08 -0.52 8.14 -2.39 -0.02 -0.53 16 26 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 27 H 0.10 -0.42 5.31 -2.39 -0.01 -0.43 16 28 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 31 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.08 -0.36 6.19 -2.39 -0.01 -0.37 16 33 H 0.06 -0.10 6.44 -2.39 -0.02 -0.12 16 34 H 0.13 0.43 4.54 -2.91 -0.01 0.42 16 35 H 0.06 0.17 7.35 -2.39 -0.02 0.15 16 36 H 0.07 0.13 7.67 -2.39 -0.02 0.11 16 37 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.09 0.08 8.10 -2.39 -0.02 0.06 16 39 H 0.40 -2.17 9.12 -74.06 -0.68 -2.85 16 40 H 0.08 0.27 7.89 -2.39 -0.02 0.25 16 41 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.08 0.80 7.82 -2.38 -0.02 0.78 16 43 H 0.39 -1.01 8.70 -74.06 -0.64 -1.65 16 44 H -0.30 -2.54 7.11 99.48 0.71 -1.83 16 45 H -0.29 -1.70 7.11 99.48 0.71 -0.99 16 46 H 0.16 -0.80 5.12 -2.91 -0.01 -0.81 16 47 H 0.15 -0.43 5.74 -2.91 -0.02 -0.44 16 Total: 0.00 -16.99 367.13 -0.48 -17.47 By element: Atomic # 1 Polarization: -9.45 SS G_CDS: -0.30 Total: -9.74 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 4.62 Total: 3.93 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -2.02 Total: -2.15 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -4.83 Total: -12.50 kcal Atomic # 14 Polarization: 0.95 SS G_CDS: 2.05 Total: 3.00 kcal Total: -16.99 -0.48 -17.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096552_11354858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.483 kcal (2) G-P(sol) polarization free energy of solvation -16.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds