Wall clock time and date at job start Tue Mar 9 2021 15:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47357 * 2 1 4 4 C 1.53000 * 109.47641 * 239.99771 * 2 1 3 5 5 Si 1.86300 * 109.46934 * 119.99571 * 2 1 3 6 6 C 1.86300 * 109.47317 * 300.00076 * 5 2 1 7 7 C 1.86305 * 109.47305 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.47009 * 60.00163 * 5 2 1 9 9 C 1.42905 * 113.99852 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.46785 * 180.02562 * 9 8 5 11 11 O 1.42897 * 109.47198 * 65.00432 * 10 9 8 12 12 C 1.35975 * 117.00047 * 180.02562 * 11 10 9 13 13 C 1.38663 * 119.98747 * 359.97438 * 12 11 10 14 14 C 1.38259 * 120.08778 * 179.97438 * 13 12 11 15 15 C 1.38486 * 120.09737 * 0.02562 * 14 13 12 16 16 O 1.36596 * 131.47069 * 179.97438 * 15 14 13 17 17 C 1.43993 * 105.47537 * 162.71538 * 16 15 14 18 18 O 1.43983 * 103.74037 * 27.14683 * 17 16 15 19 19 C 1.36507 * 105.50015 * 332.84079 * 18 17 16 20 20 C 1.38492 * 131.47658 * 197.63816 * 19 18 17 21 21 C 1.50702 * 120.00547 * 359.93618 * 20 19 18 22 22 O 1.42892 * 109.47267 * 303.78120 * 21 20 19 23 23 Si 1.86303 * 109.46873 * 63.77848 * 21 20 19 24 24 H 1.48502 * 109.47263 * 54.54913 * 23 21 20 25 25 H 1.48505 * 109.46908 * 174.54584 * 23 21 20 26 26 H 1.48497 * 109.47264 * 294.54475 * 23 21 20 27 27 H 1.09000 * 109.47503 * 300.00511 * 1 2 3 28 28 H 1.09003 * 109.46919 * 60.00083 * 1 2 3 29 29 H 1.08999 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46526 * 299.99773 * 3 2 1 32 32 H 1.09000 * 109.47231 * 59.99322 * 3 2 1 33 33 H 1.09000 * 109.46940 * 300.00118 * 4 2 1 34 34 H 1.09001 * 109.47159 * 59.99666 * 4 2 1 35 35 H 1.08998 * 109.47746 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47043 * 179.97438 * 6 5 2 37 37 H 1.09000 * 109.47202 * 300.00077 * 6 5 2 38 38 H 1.09006 * 109.46675 * 59.99916 * 6 5 2 39 39 H 1.09003 * 109.46867 * 300.00345 * 7 5 2 40 40 H 1.09000 * 109.46970 * 60.00073 * 7 5 2 41 41 H 1.08993 * 109.47184 * 180.02562 * 7 5 2 42 42 H 1.08997 * 109.47010 * 60.00481 * 9 8 5 43 43 H 1.08993 * 109.47514 * 300.00191 * 9 8 5 44 44 H 1.09000 * 109.46730 * 185.00634 * 10 9 8 45 45 H 1.08999 * 109.47023 * 305.00103 * 10 9 8 46 46 H 1.08007 * 119.95393 * 0.02562 * 13 12 11 47 47 H 1.07995 * 119.95107 * 180.02562 * 14 13 12 48 48 H 1.09002 * 110.56779 * 268.58563 * 17 16 15 49 49 H 1.08999 * 110.57255 * 145.70824 * 17 16 15 50 50 H 1.09001 * 109.47389 * 183.77833 * 21 20 19 51 51 H 0.96698 * 114.00169 * 299.99816 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1509 -0.8781 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0140 -0.8775 1.5217 8 8 1.6072 -2.4159 1.5213 9 6 2.0293 -3.1815 2.6516 10 6 1.4644 -4.5996 2.5467 11 8 2.0329 -5.2561 1.4119 12 6 1.6333 -6.5337 1.1734 13 6 0.7138 -7.1408 2.0153 14 6 0.3056 -8.4396 1.7744 15 6 0.8141 -9.1380 0.6921 16 8 0.5795 -10.4065 0.2429 17 6 1.0560 -10.4273 -1.1157 18 8 2.0820 -9.4173 -1.1338 19 6 1.7380 -8.5302 -0.1549 20 6 2.1405 -7.2269 0.0845 21 6 3.1348 -6.5644 -0.8339 22 8 4.3230 -7.3553 -0.8998 23 14 2.3977 -6.4079 -2.5378 24 1 1.0956 -5.6993 -2.4508 25 1 3.3227 -5.6386 -3.4084 26 1 2.1876 -7.7610 -3.1124 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 1.8929 -0.5139 3.9323 37 1 1.8932 1.0278 3.0423 38 1 0.4398 0.0001 3.0422 39 1 4.3777 -1.3911 0.6317 40 1 4.3769 0.1503 1.5219 41 1 4.3772 -1.3916 2.4115 42 1 1.6651 -2.7117 3.5652 43 1 3.1181 -3.2254 2.6748 44 1 1.7114 -5.1568 3.4504 45 1 0.3813 -4.5518 2.4340 46 1 0.3154 -6.5980 2.8598 47 1 -0.4110 -8.9102 2.4313 48 1 0.2533 -10.1702 -1.8070 49 1 1.4751 -11.4034 -1.3597 50 1 3.3787 -5.5733 -0.4512 51 1 4.7610 -7.4789 -0.0466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15096578_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:55:43 Heat of formation + Delta-G solvation = -203.988466 kcal Electronic energy + Delta-G solvation = -31230.553787 eV Core-core repulsion = 27026.914506 eV Total energy + Delta-G solvation = -4203.639281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.15383 -40.94995 -38.56819 -37.73386 -37.19714 -36.85731 -36.72625 -32.54790 -31.07517 -29.94326 -29.40131 -29.12984 -27.88510 -27.41140 -26.76050 -26.62269 -24.77726 -23.14651 -22.57806 -20.45442 -19.75666 -18.90017 -18.74102 -18.24587 -17.89458 -17.48829 -16.95188 -16.51296 -16.27389 -16.08117 -15.92020 -15.68848 -15.49617 -15.16791 -14.90102 -14.87448 -14.72289 -14.45806 -14.06899 -14.01603 -13.86202 -13.75952 -13.58380 -13.54813 -13.48371 -13.29460 -13.10211 -12.96171 -12.94377 -12.59741 -12.51566 -12.41258 -12.04747 -11.93533 -11.85290 -11.73142 -11.60693 -11.39708 -11.28470 -11.20538 -10.92094 -10.43586 -10.10620 -9.56634 -8.76686 0.03329 0.18614 1.36563 1.37425 1.57009 1.68563 1.69354 1.75946 1.99761 2.14472 2.19345 2.36829 2.52894 2.64196 3.36115 3.66767 3.72712 3.76392 3.89136 3.91891 3.98139 4.03535 4.05839 4.09740 4.10604 4.14353 4.22945 4.31364 4.44441 4.45779 4.51521 4.60591 4.64839 4.68058 4.70588 4.78750 4.84102 4.88239 4.98080 4.99644 5.07487 5.08706 5.09275 5.14050 5.16623 5.20748 5.28469 5.32327 5.39388 5.47256 5.49084 5.56573 6.06098 6.29112 6.70968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.055 3.945 11 O -0.296 6.296 12 C 0.157 3.843 13 C -0.204 4.204 14 C -0.053 4.053 15 C -0.008 4.008 16 O -0.307 6.307 17 C 0.209 3.791 18 O -0.289 6.289 19 C 0.092 3.908 20 C -0.144 4.144 21 C -0.075 4.075 22 O -0.534 6.534 23 Si 0.999 3.001 24 H -0.250 1.250 25 H -0.250 1.250 26 H -0.243 1.243 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.145 0.855 47 H 0.140 0.860 48 H 0.085 0.915 49 H 0.134 0.866 50 H 0.087 0.913 51 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 1.907 3.635 4.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.193 4.193 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.010 3.990 10 C -0.020 4.020 11 O -0.209 6.209 12 C 0.111 3.889 13 C -0.222 4.222 14 C -0.072 4.072 15 C -0.053 4.053 16 O -0.224 6.224 17 C 0.097 3.903 18 O -0.204 6.204 19 C 0.046 3.954 20 C -0.146 4.146 21 C -0.183 4.183 22 O -0.339 6.339 23 Si 0.817 3.183 24 H -0.173 1.173 25 H -0.174 1.174 26 H -0.166 1.166 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.163 0.837 47 H 0.158 0.842 48 H 0.103 0.897 49 H 0.152 0.848 50 H 0.105 0.895 51 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.841 1.690 1.874 3.124 hybrid contribution 0.337 0.189 1.443 1.493 sum -1.504 1.879 3.317 4.098 Atomic orbital electron populations 1.21512 0.93840 1.01995 1.01769 1.25778 1.00653 1.02606 1.12747 1.21556 1.00792 0.94908 1.02123 1.21525 1.00694 1.00335 0.96718 0.76734 0.63130 0.53329 0.65040 1.27047 1.07022 1.09618 1.17673 1.27027 1.24941 1.04722 1.04584 1.85414 1.79083 1.46002 1.47271 1.22096 0.99428 0.89633 0.87826 1.23102 0.99405 0.91919 0.87553 1.86112 1.64536 1.22843 1.47393 1.18125 0.93666 0.84534 0.92575 1.20988 1.02446 0.96000 1.02814 1.19849 0.99218 0.92641 0.95515 1.19652 1.01087 0.85032 0.99492 1.87400 1.80678 1.26147 1.28128 1.25728 0.87743 0.93848 0.82984 1.87523 1.46306 1.34070 1.52533 1.19115 0.94955 0.90891 0.90401 1.18381 1.06018 0.90939 0.99277 1.25000 0.86943 0.95922 1.10436 1.86734 1.38263 1.73611 1.35302 0.84669 0.78965 0.81562 0.73106 1.17288 1.17379 1.16595 0.92743 0.92799 0.92156 0.92501 0.92503 0.92559 0.92043 0.92781 0.92620 0.91516 0.90634 0.90848 0.90706 0.90741 0.91507 0.90261 0.91314 0.90309 0.90334 0.83723 0.84169 0.89707 0.84817 0.89518 0.78685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 7.85 37.16 0.29 0.33 16 2 C -0.37 0.23 0.53 -90.62 -0.05 0.18 16 3 C -0.14 0.12 7.85 37.16 0.29 0.41 16 4 C -0.14 -0.01 7.85 37.16 0.29 0.28 16 5 Si 1.29 -2.27 8.45 -169.99 -1.44 -3.71 16 6 C -0.51 0.91 8.50 101.05 0.86 1.77 16 7 C -0.51 0.62 8.50 101.05 0.86 1.48 16 8 O -0.62 0.41 8.52 -40.08 -0.34 0.07 16 9 C 0.09 -0.22 5.51 37.16 0.20 -0.02 16 10 C 0.06 -0.13 5.12 37.16 0.19 0.06 16 11 O -0.30 -0.19 8.87 -24.51 -0.22 -0.41 16 12 C 0.16 0.22 6.66 -39.26 -0.26 -0.04 16 13 C -0.20 0.02 9.03 -39.42 -0.36 -0.33 16 14 C -0.05 -0.04 10.05 -39.48 -0.40 -0.44 16 15 C -0.01 -0.03 7.15 -39.10 -0.28 -0.30 16 16 O -0.31 -0.92 11.41 -46.01 -0.52 -1.45 16 17 C 0.21 0.17 8.89 101.05 0.90 1.06 16 18 O -0.29 -1.09 10.19 -45.71 -0.47 -1.56 16 19 C 0.09 0.33 5.95 -39.09 -0.23 0.09 16 20 C -0.14 -0.40 4.48 -104.36 -0.47 -0.87 16 21 C -0.07 -0.19 2.71 36.01 0.10 -0.09 16 22 O -0.53 -1.54 12.48 -35.23 -0.44 -1.98 16 23 Si 1.00 3.02 27.33 -169.99 -4.65 -1.63 16 24 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 25 H -0.25 -0.82 7.11 56.52 0.40 -0.42 16 26 H -0.24 -0.97 6.74 56.52 0.38 -0.59 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 28 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 0.00 7.97 -51.93 -0.41 -0.42 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 33 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 34 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 36 H 0.07 -0.16 7.48 -51.93 -0.39 -0.55 16 37 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 38 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 39 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 41 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 42 H 0.08 -0.39 7.21 -51.93 -0.37 -0.77 16 43 H 0.07 -0.23 7.21 -51.93 -0.37 -0.60 16 44 H 0.08 -0.36 7.66 -51.93 -0.40 -0.75 16 45 H 0.08 -0.22 7.66 -51.93 -0.40 -0.62 16 46 H 0.15 -0.43 6.28 -52.48 -0.33 -0.76 16 47 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 48 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 49 H 0.13 -0.27 8.14 -51.93 -0.42 -0.69 16 50 H 0.09 0.13 6.82 -51.93 -0.35 -0.23 16 51 H 0.37 -0.06 9.08 45.56 0.41 0.35 16 LS Contribution 408.71 15.07 6.16 6.16 Total: 0.00 -6.45 408.71 -7.98 -14.43 By element: Atomic # 1 Polarization: -5.49 SS G_CDS: -8.01 Total: -13.50 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 1.94 Total: 3.57 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Atomic # 14 Polarization: 0.75 SS G_CDS: -6.08 Total: -5.34 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -6.45 -7.98 -14.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.559 kcal (2) G-P(sol) polarization free energy of solvation -6.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds