Wall clock time and date at job start Tue Mar 9 2021 15:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52996 * 109.47042 * 239.99985 * 2 1 3 5 5 O 1.45202 * 109.47163 * 119.99775 * 2 1 3 6 6 C 1.34637 * 116.99635 * 60.00219 * 5 2 1 7 7 O 1.21506 * 120.00344 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99431 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99461 * 180.02562 * 8 6 5 10 10 H 1.08995 * 112.85264 * 336.19197 * 9 8 6 11 11 C 1.53785 * 113.69254 * 107.46541 * 9 8 6 12 12 C 1.53777 * 87.07933 * 139.98747 * 11 9 8 13 13 H 1.09001 * 113.69233 * 89.13029 * 12 11 9 14 14 C 1.52999 * 113.61231 * 220.01438 * 12 11 9 15 15 O 1.42903 * 109.47478 * 272.49922 * 14 12 11 16 16 C 1.35971 * 117.00192 * 179.97438 * 15 14 12 17 17 C 1.38655 * 119.98677 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00238 * 0.02562 * 17 16 15 19 19 O 1.42898 * 109.47009 * 245.07825 * 18 17 16 20 20 Si 1.86303 * 109.46838 * 125.08287 * 18 17 16 21 21 C 1.38534 * 119.98878 * 179.72482 * 17 16 15 22 22 C 1.39255 * 119.88078 * 0.25653 * 21 17 16 23 23 C 1.38519 * 119.91910 * 359.97438 * 22 21 17 24 24 C 1.38216 * 120.10376 * 359.97438 * 23 22 21 25 25 O 1.36602 * 108.61444 * 180.02562 * 22 21 17 26 26 C 1.43979 * 105.47852 * 342.71332 * 25 22 21 27 27 O 1.36510 * 131.46751 * 180.28310 * 21 17 16 28 28 C 1.53772 * 87.08490 * 334.56502 * 12 11 9 29 29 H 1.09007 * 109.47117 * 300.00134 * 1 2 3 30 30 H 1.08994 * 109.47391 * 59.99567 * 1 2 3 31 31 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47439 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47026 * 300.00720 * 3 2 1 34 34 H 1.09004 * 109.46840 * 59.99547 * 3 2 1 35 35 H 1.08992 * 109.47245 * 299.99874 * 4 2 1 36 36 H 1.09006 * 109.46996 * 60.00295 * 4 2 1 37 37 H 1.09000 * 109.47437 * 179.97438 * 4 2 1 38 38 H 0.96996 * 120.00703 * 359.97438 * 8 6 5 39 39 H 1.09000 * 113.61219 * 25.43660 * 11 9 8 40 40 H 1.08996 * 113.60735 * 254.53825 * 11 9 8 41 41 H 1.09006 * 109.47482 * 152.50041 * 14 12 11 42 42 H 1.09000 * 109.47154 * 32.50221 * 14 12 11 43 43 H 1.08992 * 109.47042 * 5.08427 * 18 17 16 44 44 H 0.96706 * 113.99402 * 60.00584 * 19 18 17 45 45 H 1.48501 * 109.99891 * 176.25321 * 20 18 17 46 46 H 1.48491 * 110.00162 * 297.57472 * 20 18 17 47 47 H 1.08004 * 119.95086 * 179.97438 * 23 22 21 48 48 H 1.07999 * 119.96432 * 180.02562 * 24 23 22 49 49 H 1.08997 * 110.57651 * 268.57424 * 26 25 22 50 50 H 1.09003 * 110.57483 * 145.69070 * 26 25 22 51 51 H 1.08998 * 113.61327 * 139.98341 * 28 12 11 52 52 H 1.08993 * 113.61694 * 270.80279 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5041 8 7 2.0673 -2.6653 2.4172 9 6 1.6741 -4.0668 2.5831 10 1 0.7602 -4.3167 2.0443 11 6 2.8214 -5.0628 2.3452 12 6 2.2718 -5.8603 3.5397 13 1 1.5213 -6.6010 3.2637 14 6 3.3617 -6.4296 4.4500 15 8 3.7710 -7.7084 3.9609 16 6 4.7409 -8.3555 4.6606 17 6 5.1851 -9.6000 4.2406 18 6 4.5933 -10.2351 3.0087 19 8 3.8899 -11.4233 3.3765 20 14 5.9579 -10.6655 1.8156 21 6 6.1773 -10.2567 4.9502 22 6 6.7229 -9.6670 6.0876 23 6 6.2725 -8.4257 6.5059 24 6 5.2832 -7.7718 5.7959 25 8 7.6720 -10.5049 6.6006 26 6 7.4142 -11.7892 6.0031 27 8 6.7838 -11.4632 4.7503 28 6 1.6742 -4.5374 4.0472 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2492 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.6268 -2.2365 3.0834 39 1 3.8104 -4.6395 2.5206 40 1 2.7492 -5.5932 1.3957 41 1 2.9711 -6.5358 5.4621 42 1 4.2168 -5.7537 4.4597 43 1 3.9037 -9.5363 2.5353 44 1 3.1637 -11.2741 3.9975 45 1 5.3973 -11.3737 0.6369 46 1 6.6598 -9.4315 1.3802 47 1 6.6950 -7.9680 7.3883 48 1 4.9340 -6.8038 6.1239 49 1 6.7412 -12.3749 6.6292 50 1 8.3470 -12.3272 5.8339 51 1 0.6760 -4.6437 4.4718 52 1 2.3491 -3.9713 4.6891 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096578_15734236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 15:56:14 Heat of formation + Delta-G solvation = -150.827815 kcal Electronic energy + Delta-G solvation = -35298.396390 eV Core-core repulsion = 30425.633427 eV Total energy + Delta-G solvation = -4872.762962 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.19039 -41.94784 -41.14109 -40.12502 -38.30026 -37.87649 -37.32443 -36.88107 -35.43882 -34.26095 -32.51276 -30.52863 -29.18179 -28.41134 -28.33646 -26.88118 -26.75141 -26.61256 -25.08817 -23.63983 -22.99491 -22.28890 -21.44088 -20.56637 -19.72272 -19.15692 -19.00018 -18.69321 -17.95225 -17.83654 -17.57098 -17.23831 -17.09436 -16.75668 -16.54380 -16.21342 -15.97380 -15.83933 -15.58579 -15.45455 -15.38906 -15.01078 -14.55601 -14.38343 -14.14928 -14.08467 -13.97861 -13.87976 -13.50828 -13.47051 -13.39468 -13.25673 -13.11870 -12.95480 -12.90500 -12.67669 -12.65418 -12.52824 -12.41893 -12.34277 -12.11390 -11.76078 -11.52338 -11.43474 -11.37764 -11.17779 -11.15537 -11.12690 -10.18794 -9.71160 -8.82317 -4.94397 -0.03787 0.10796 1.13371 1.26091 1.48289 1.62855 1.69810 1.80489 2.16719 2.45636 2.67979 3.12408 3.27719 3.37489 3.47529 3.68549 3.70397 3.72272 3.74487 3.76949 3.79454 3.90031 3.90627 3.90889 4.06164 4.16342 4.21041 4.28653 4.30615 4.40629 4.47016 4.48643 4.57110 4.61297 4.68171 4.72412 4.74737 4.77492 4.79564 4.83444 4.84012 4.90748 4.93787 5.01259 5.05183 5.06191 5.11458 5.16636 5.20969 5.22842 5.28642 5.46814 5.56758 6.02959 6.28156 6.37197 6.60748 7.30891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.596 6.596 8 N -0.688 5.688 9 C 0.132 3.868 10 H 0.102 0.898 11 C -0.150 4.150 12 C -0.101 4.101 13 H 0.103 0.897 14 C 0.064 3.936 15 O -0.320 6.320 16 C 0.149 3.851 17 C -0.160 4.160 18 C -0.060 4.060 19 O -0.545 6.545 20 Si 0.783 3.217 21 C 0.083 3.917 22 C -0.024 4.024 23 C -0.054 4.054 24 C -0.195 4.195 25 O -0.323 6.323 26 C 0.203 3.797 27 O -0.303 6.303 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.419 0.581 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.376 0.624 45 H -0.282 1.282 46 H -0.273 1.273 47 H 0.161 0.839 48 H 0.174 0.826 49 H 0.101 0.899 50 H 0.162 0.838 51 H 0.094 0.906 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 3.702 6.423 7.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.348 5.348 9 C 0.029 3.971 10 H 0.120 0.880 11 C -0.189 4.189 12 C -0.120 4.120 13 H 0.121 0.879 14 C -0.010 4.010 15 O -0.234 6.234 16 C 0.102 3.898 17 C -0.161 4.161 18 C -0.169 4.169 19 O -0.352 6.352 20 Si 0.685 3.315 21 C 0.038 3.962 22 C -0.069 4.069 23 C -0.073 4.073 24 C -0.213 4.213 25 O -0.240 6.240 26 C 0.093 3.907 27 O -0.219 6.219 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.256 0.744 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.225 0.775 45 H -0.208 1.208 46 H -0.199 1.199 47 H 0.178 0.822 48 H 0.191 0.809 49 H 0.118 0.882 50 H 0.179 0.821 51 H 0.113 0.887 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.282 3.182 4.546 5.696 hybrid contribution -1.061 0.712 0.511 1.376 sum 0.221 3.894 5.058 6.387 Atomic orbital electron populations 1.22471 0.94002 1.03659 1.03565 1.22343 0.94487 0.92599 0.81467 1.21892 1.02438 0.90822 1.04300 1.22473 1.01584 1.02206 0.97501 1.86311 1.71532 1.23341 1.47202 1.18471 0.78589 0.80716 0.82697 1.90905 1.42406 1.71082 1.44337 1.44754 1.54832 1.12233 1.22949 1.22569 0.98610 0.77069 0.98874 0.88029 1.23646 0.99324 0.96927 0.98997 1.22272 0.97548 0.96362 0.95815 0.87901 1.23141 0.97744 0.81382 0.98757 1.86044 1.51501 1.33972 1.51913 1.18272 0.89482 0.90662 0.91351 1.18401 1.00108 0.95612 1.02025 1.24979 1.02836 0.89615 0.99484 1.86718 1.50183 1.30457 1.67816 0.92048 0.81665 0.82263 0.75512 1.19198 0.94375 0.87678 0.94976 1.19931 0.94357 0.96511 0.96055 1.20210 0.95542 0.90945 1.00593 1.21284 1.00658 1.03175 0.96199 1.87368 1.49229 1.20846 1.66530 1.26157 1.00728 0.85086 0.78711 1.87344 1.65706 1.33487 1.35346 1.23329 1.03600 0.93882 0.94493 0.91791 0.89520 0.91860 0.91206 0.88368 0.91033 0.91929 0.89494 0.92026 0.74382 0.88586 0.92294 0.89173 0.89908 0.90040 0.77474 1.20795 1.19911 0.82177 0.80909 0.88159 0.82063 0.88725 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.68 8.37 71.98 0.60 -0.08 16 5 O -0.37 -1.90 9.94 -55.46 -0.55 -2.45 16 6 C 0.64 4.05 8.06 129.79 1.05 5.09 16 7 O -0.60 -7.30 11.48 19.82 0.23 -7.07 16 8 N -0.69 0.74 5.36 -567.59 -3.04 -2.31 16 9 C 0.13 -0.36 4.24 45.52 0.19 -0.17 16 10 H 0.10 0.18 7.46 -2.39 -0.02 0.16 16 11 C -0.15 0.45 7.43 31.12 0.23 0.69 16 12 C -0.10 0.67 4.01 -10.27 -0.04 0.63 16 13 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C 0.06 -0.46 4.58 71.98 0.33 -0.13 16 15 O -0.32 0.02 8.90 -93.22 -0.83 -0.81 16 16 C 0.15 0.20 6.66 22.48 0.15 0.35 16 17 C -0.16 -0.74 4.61 -19.69 -0.09 -0.84 16 18 C -0.06 -0.34 2.72 71.24 0.19 -0.15 16 19 O -0.55 -3.11 12.61 -148.98 -1.88 -4.98 16 20 Si 0.78 5.58 31.13 68.60 2.14 7.71 16 21 C 0.08 0.42 6.02 22.59 0.14 0.56 16 22 C -0.02 -0.09 7.15 22.58 0.16 0.07 16 23 C -0.05 0.04 10.05 22.33 0.22 0.27 16 24 C -0.19 0.54 9.03 22.38 0.20 0.74 16 25 O -0.32 -1.17 11.41 -77.25 -0.88 -2.05 16 26 C 0.20 -0.37 8.89 113.37 1.01 0.64 16 27 O -0.30 -1.16 9.73 -76.17 -0.74 -1.90 16 28 C -0.12 1.09 7.39 31.12 0.23 1.32 16 29 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 34 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 35 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 36 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 37 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.42 -2.69 8.84 -92.71 -0.82 -3.51 16 39 H 0.10 -0.42 7.90 -2.39 -0.02 -0.44 16 40 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.09 -0.97 7.65 -2.38 -0.02 -0.99 16 42 H 0.08 -0.81 7.37 -2.39 -0.02 -0.83 16 43 H 0.08 0.46 6.82 -2.39 -0.02 0.44 16 44 H 0.38 -0.20 9.08 -74.05 -0.67 -0.87 16 45 H -0.28 -3.36 7.11 99.48 0.71 -2.66 16 46 H -0.27 -2.82 7.11 99.48 0.71 -2.11 16 47 H 0.16 -0.86 8.06 -2.91 -0.02 -0.88 16 48 H 0.17 -1.64 6.29 -2.91 -0.02 -1.66 16 49 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 50 H 0.16 -1.31 8.14 -2.39 -0.02 -1.33 16 51 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 52 H 0.12 -1.57 8.08 -2.39 -0.02 -1.59 16 Total: 0.00 -21.10 419.36 -0.25 -21.35 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: -0.49 Total: -17.80 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.80 Total: 10.31 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -3.04 Total: -2.31 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -4.66 Total: -19.26 kcal Atomic # 14 Polarization: 5.58 SS G_CDS: 2.14 Total: 7.71 kcal Total: -21.10 -0.25 -21.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_15734236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.476 kcal (2) G-P(sol) polarization free energy of solvation -21.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds