Wall clock time and date at job start Tue Mar 9 2021 16:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47136 * 239.99724 * 2 1 3 5 5 Si 1.86298 * 109.47152 * 119.99977 * 2 1 3 6 6 C 1.86303 * 109.47046 * 299.99746 * 5 2 1 7 7 C 1.86306 * 109.47438 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47263 * 59.99952 * 5 2 1 9 9 C 1.42901 * 114.00327 * 180.02562 * 8 5 2 10 10 C 1.53001 * 109.47320 * 180.02562 * 9 8 5 11 11 C 1.53006 * 109.46898 * 179.97438 * 10 9 8 12 12 O 1.42906 * 109.46851 * 179.97438 * 11 10 9 13 13 C 1.35974 * 116.99932 * 180.02562 * 12 11 10 14 14 C 1.38660 * 119.98772 * 359.97438 * 13 12 11 15 15 C 1.38261 * 120.08539 * 179.97438 * 14 13 12 16 16 C 1.38481 * 120.09975 * 0.02562 * 15 14 13 17 17 O 1.36604 * 131.47341 * 180.02562 * 16 15 14 18 18 C 1.43979 * 105.47264 * 162.71081 * 17 16 15 19 19 O 1.43979 * 103.75011 * 27.14454 * 18 17 16 20 20 C 1.36509 * 105.49796 * 332.84393 * 19 18 17 21 21 C 1.38485 * 131.47400 * 197.64051 * 20 19 18 22 22 C 1.50701 * 120.00829 * 359.92930 * 21 20 19 23 23 O 1.42900 * 109.47072 * 303.78047 * 22 21 20 24 24 Si 1.86298 * 109.47019 * 63.78230 * 22 21 20 25 25 H 1.48498 * 109.47326 * 54.54438 * 24 22 21 26 26 H 1.48503 * 109.46824 * 174.54842 * 24 22 21 27 27 H 1.48498 * 109.47153 * 294.54096 * 24 22 21 28 28 H 1.09000 * 109.47330 * 300.00161 * 1 2 3 29 29 H 1.08996 * 109.47310 * 60.00085 * 1 2 3 30 30 H 1.09003 * 109.47565 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47207 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46961 * 299.99596 * 3 2 1 33 33 H 1.08991 * 109.47187 * 59.99952 * 3 2 1 34 34 H 1.09004 * 109.47520 * 300.00252 * 4 2 1 35 35 H 1.09005 * 109.47301 * 60.00262 * 4 2 1 36 36 H 1.09000 * 109.47205 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46971 * 180.02562 * 6 5 2 38 38 H 1.08994 * 109.47012 * 299.99998 * 6 5 2 39 39 H 1.09000 * 109.47007 * 60.00120 * 6 5 2 40 40 H 1.09006 * 109.46648 * 300.00290 * 7 5 2 41 41 H 1.09001 * 109.46540 * 59.99535 * 7 5 2 42 42 H 1.08993 * 109.46870 * 180.02562 * 7 5 2 43 43 H 1.09003 * 109.47422 * 59.99726 * 9 8 5 44 44 H 1.09004 * 109.46916 * 299.99931 * 9 8 5 45 45 H 1.09000 * 109.47428 * 59.99934 * 10 9 8 46 46 H 1.08996 * 109.46993 * 299.99196 * 10 9 8 47 47 H 1.08996 * 109.46964 * 299.99609 * 11 10 9 48 48 H 1.09000 * 109.46813 * 59.99952 * 11 10 9 49 49 H 1.08003 * 119.95280 * 359.97438 * 14 13 12 50 50 H 1.08005 * 119.94623 * 180.02562 * 15 14 13 51 51 H 1.09004 * 110.57403 * 268.57422 * 18 17 16 52 52 H 1.09004 * 110.57209 * 145.71107 * 18 17 16 53 53 H 1.09005 * 109.47139 * 183.78153 * 22 21 20 54 54 H 0.96704 * 113.99988 * 300.00028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0285 -3.1813 2.6520 10 6 1.4637 -4.5994 2.5471 11 6 1.9152 -5.4190 3.7576 12 8 1.3872 -6.7434 3.6598 13 6 1.6961 -7.6068 4.6638 14 6 2.4911 -7.1864 5.7193 15 6 2.8060 -8.0625 6.7415 16 6 2.3290 -9.3622 6.7139 17 8 2.4908 -10.4040 7.5826 18 6 1.4515 -11.3442 7.2528 19 8 1.1934 -11.0938 5.8586 20 6 1.5310 -9.7871 5.6541 21 6 1.2122 -8.9062 4.6341 22 6 0.3436 -9.3609 3.4896 23 8 0.9309 -10.5082 2.8725 24 14 -1.3496 -9.7992 4.1311 25 1 -1.9059 -8.6484 4.8870 26 1 -2.2436 -10.1204 2.9896 27 1 -1.2492 -10.9785 5.0281 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.8937 -0.5135 3.9323 38 1 1.8934 1.0277 3.0422 39 1 0.4400 0.0001 3.0423 40 1 4.3769 -1.3930 0.6307 41 1 4.3776 0.1486 1.5205 42 1 4.3772 -1.3931 2.4105 43 1 1.6637 -2.7112 3.5653 44 1 3.1174 -3.2252 2.6759 45 1 1.8289 -5.0693 1.6339 46 1 0.3749 -4.5559 2.5230 47 1 3.0040 -5.4625 3.7812 48 1 1.5503 -4.9492 4.6709 49 1 2.8647 -6.1733 5.7429 50 1 3.4251 -7.7326 7.5628 51 1 0.5586 -11.1527 7.8480 52 1 1.7991 -12.3667 7.4003 53 1 0.2581 -8.5582 2.7572 54 1 1.8158 -10.3527 2.5149 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096578_18527724.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:01:54 Heat of formation + Delta-G solvation = -205.084530 kcal Electronic energy + Delta-G solvation = -32027.035289 eV Core-core repulsion = 27667.810860 eV Total energy + Delta-G solvation = -4359.224429 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 370.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.24851 -40.97115 -38.53288 -37.99594 -37.41950 -36.90266 -36.80694 -33.55274 -32.25804 -30.27377 -29.34081 -29.03229 -27.82451 -27.35460 -26.88782 -26.72082 -26.66738 -23.72049 -23.09334 -22.21956 -20.40139 -19.74245 -19.02163 -18.80765 -17.96162 -17.78968 -17.42988 -17.37864 -16.72926 -16.32087 -16.16326 -15.98667 -15.91106 -15.50440 -15.19212 -15.07413 -14.84667 -14.72695 -14.67592 -14.10838 -14.07857 -13.99569 -13.94497 -13.83733 -13.53531 -13.34979 -13.23484 -13.12626 -13.09371 -12.93615 -12.91483 -12.73389 -12.38368 -12.31289 -12.19636 -12.16475 -12.08106 -11.69710 -11.67778 -11.39169 -11.33779 -11.25420 -11.19510 -11.07062 -10.26702 -10.03136 -9.68091 -8.85592 -0.05283 0.08711 1.16037 1.38348 1.43215 1.49036 1.66291 1.81941 1.95207 2.16178 2.16821 2.44225 2.50509 2.68010 3.26785 3.66586 3.74550 3.81751 3.87379 3.98074 4.01292 4.10528 4.14480 4.14507 4.15381 4.20556 4.26643 4.38610 4.44113 4.48185 4.50547 4.52089 4.77810 4.78124 4.79779 4.81574 4.83152 4.84484 4.84549 4.91774 5.01837 5.02689 5.10386 5.10873 5.11148 5.13687 5.14172 5.21243 5.25133 5.37005 5.42883 5.46860 5.59937 5.65228 5.68188 5.98481 6.28893 6.66342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.321 2.679 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.641 6.641 9 C 0.078 3.922 10 C -0.122 4.122 11 C 0.049 3.951 12 O -0.315 6.315 13 C 0.155 3.845 14 C -0.192 4.192 15 C -0.053 4.053 16 C -0.029 4.029 17 O -0.322 6.322 18 C 0.200 3.800 19 O -0.312 6.312 20 C 0.072 3.928 21 C -0.159 4.159 22 C -0.073 4.073 23 O -0.550 6.550 24 Si 1.013 2.987 25 H -0.247 1.247 26 H -0.259 1.259 27 H -0.263 1.263 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.178 0.822 50 H 0.162 0.838 51 H 0.100 0.900 52 H 0.157 0.843 53 H 0.095 0.905 54 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 4.740 2.672 5.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.451 2.549 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.601 6.601 9 C 0.003 3.997 10 C -0.160 4.160 11 C -0.025 4.025 12 O -0.229 6.229 13 C 0.108 3.892 14 C -0.211 4.211 15 C -0.071 4.071 16 C -0.073 4.073 17 O -0.239 6.239 18 C 0.090 3.910 19 O -0.228 6.228 20 C 0.027 3.973 21 C -0.161 4.161 22 C -0.181 4.181 23 O -0.356 6.356 24 Si 0.833 3.167 25 H -0.171 1.171 26 H -0.183 1.183 27 H -0.187 1.187 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.196 0.804 50 H 0.180 0.820 51 H 0.118 0.882 52 H 0.174 0.826 53 H 0.113 0.887 54 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.817 3.834 2.846 4.844 hybrid contribution 1.213 0.557 -0.217 1.352 sum 2.031 4.391 2.629 5.506 Atomic orbital electron populations 1.21539 0.94389 1.01735 1.01757 1.26000 1.00332 1.03074 1.13511 1.21600 1.01286 0.94764 1.02131 1.21542 1.01019 1.00003 0.96857 0.76090 0.62464 0.52592 0.63775 1.27099 1.06824 1.09833 1.18229 1.27101 1.25205 1.04989 1.04697 1.85324 1.79741 1.46661 1.48347 1.22036 0.99306 0.91009 0.87362 1.21498 1.02924 0.93709 0.97886 1.23038 1.00036 0.79122 1.00294 1.86018 1.71179 1.23003 1.42701 1.18172 0.93947 0.88505 0.88548 1.21350 1.03156 1.02541 0.94025 1.20227 0.99436 0.87399 1.00082 1.20004 1.03680 0.91715 0.91865 1.87355 1.52551 1.28693 1.55291 1.26095 0.90326 0.96463 0.78154 1.87473 1.83055 1.23131 1.29116 1.19322 0.98072 0.84104 0.95777 1.18504 1.06992 0.91336 0.99252 1.24936 1.06156 0.92227 0.94818 1.86688 1.36505 1.34919 1.77520 0.84471 0.72531 0.80132 0.79531 1.17059 1.18335 1.18671 0.92056 0.93575 0.92533 0.91777 0.93374 0.91766 0.92540 0.93574 0.92062 0.90588 0.90531 0.91265 0.91284 0.90530 0.90598 0.90586 0.90622 0.90491 0.90444 0.89357 0.89324 0.80436 0.82042 0.88246 0.82573 0.88684 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.03 7.85 71.98 0.56 0.60 16 2 C -0.39 0.60 0.53 -10.80 -0.01 0.59 16 3 C -0.14 0.31 7.85 71.98 0.56 0.87 16 4 C -0.14 0.03 7.85 71.98 0.56 0.60 16 5 Si 1.32 -6.20 8.45 68.60 0.58 -5.62 16 6 C -0.52 2.35 8.50 113.37 0.96 3.32 16 7 C -0.52 2.33 8.50 113.37 0.96 3.30 16 8 O -0.64 1.56 8.56 -148.98 -1.28 0.29 16 9 C 0.08 -0.53 5.12 71.98 0.37 -0.16 16 10 C -0.12 0.66 5.95 30.60 0.18 0.84 16 11 C 0.05 -0.36 4.74 71.98 0.34 -0.02 16 12 O -0.32 0.23 8.90 -93.25 -0.83 -0.60 16 13 C 0.15 0.17 6.66 22.48 0.15 0.32 16 14 C -0.19 0.55 9.03 22.38 0.20 0.75 16 15 C -0.05 0.01 10.05 22.33 0.22 0.23 16 16 C -0.03 -0.16 7.15 22.58 0.16 0.00 16 17 O -0.32 -1.95 11.41 -77.28 -0.88 -2.83 16 18 C 0.20 0.38 8.89 113.37 1.01 1.38 16 19 O -0.31 -2.61 10.19 -76.16 -0.78 -3.39 16 20 C 0.07 0.53 5.95 22.58 0.13 0.66 16 21 C -0.16 -0.81 4.48 -19.70 -0.09 -0.90 16 22 C -0.07 -0.36 2.71 71.24 0.19 -0.17 16 23 O -0.55 -3.54 12.48 -148.98 -1.86 -5.40 16 24 Si 1.01 6.21 27.33 68.60 1.87 8.09 16 25 H -0.25 -1.23 7.11 99.48 0.71 -0.52 16 26 H -0.26 -1.84 7.11 99.48 0.71 -1.13 16 27 H -0.26 -2.43 6.74 99.48 0.67 -1.76 16 28 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 29 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 32 H 0.05 -0.03 8.14 -2.38 -0.02 -0.05 16 33 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.06 0.02 7.97 -2.39 -0.02 0.00 16 35 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 37 H 0.08 -0.48 7.48 -2.38 -0.02 -0.50 16 38 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 39 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 40 H 0.07 -0.23 7.79 -2.38 -0.02 -0.25 16 41 H 0.08 -0.36 7.79 -2.39 -0.02 -0.37 16 42 H 0.07 -0.48 7.48 -2.39 -0.02 -0.49 16 43 H 0.08 -0.79 7.21 -2.39 -0.02 -0.80 16 44 H 0.08 -0.78 7.21 -2.38 -0.02 -0.80 16 45 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 46 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.09 -0.96 7.66 -2.39 -0.02 -0.98 16 48 H 0.09 -0.96 7.66 -2.39 -0.02 -0.98 16 49 H 0.18 -1.80 6.28 -2.91 -0.02 -1.81 16 50 H 0.16 -0.80 8.06 -2.91 -0.02 -0.83 16 51 H 0.10 -0.20 8.14 -2.38 -0.02 -0.22 16 52 H 0.16 -0.62 8.14 -2.39 -0.02 -0.64 16 53 H 0.10 0.23 6.82 -2.38 -0.02 0.21 16 54 H 0.38 0.14 9.08 -74.05 -0.67 -0.53 16 Total: 0.00 -15.88 430.25 4.25 -11.63 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: 0.92 Total: -14.38 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.49 Total: 12.22 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -5.62 Total: -11.93 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 2.45 Total: 2.46 kcal Total: -15.88 4.25 -11.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_18527724.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.452 kcal (2) G-P(sol) polarization free energy of solvation -15.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds