Wall clock time and date at job start Tue Mar 9 2021 16:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 C 1.53001 * 109.46856 * 239.99983 * 2 1 3 5 5 Si 1.86301 * 109.47052 * 120.00285 * 2 1 3 6 6 C 1.86308 * 109.46966 * 299.99763 * 5 2 1 7 7 C 1.86299 * 109.47218 * 179.97438 * 5 2 1 8 8 O 1.63095 * 109.47355 * 59.99626 * 5 2 1 9 9 C 1.42897 * 114.00170 * 179.97438 * 8 5 2 10 10 C 1.53000 * 109.47496 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.46988 * 64.99996 * 10 9 8 12 12 C 1.35917 * 117.00198 * 179.97438 * 11 10 9 13 13 C 1.38637 * 120.04614 * 359.97438 * 12 11 10 14 14 C 1.38400 * 119.93139 * 180.02562 * 13 12 11 15 15 F 1.35102 * 119.98923 * 180.02562 * 14 13 12 16 16 C 1.38463 * 120.02032 * 359.74544 * 14 13 12 17 17 C 1.50696 * 119.95645 * 180.27601 * 16 14 13 18 18 O 1.42895 * 109.47146 * 75.23041 * 17 16 14 19 19 Si 1.86307 * 109.46997 * 315.23303 * 17 16 14 20 20 H 1.48504 * 109.47071 * 59.99759 * 19 17 16 21 21 H 1.48503 * 109.47227 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46973 * 300.00005 * 19 17 16 23 23 C 1.38256 * 120.09071 * 0.51180 * 16 14 13 24 24 C 1.38205 * 120.07050 * 359.48457 * 23 16 14 25 25 Br 1.89095 * 120.01094 * 180.27942 * 24 23 16 26 26 H 1.09000 * 109.46841 * 299.99973 * 1 2 3 27 27 H 1.08998 * 109.47081 * 59.99846 * 1 2 3 28 28 H 1.08995 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46874 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47138 * 300.00118 * 3 2 1 31 31 H 1.09000 * 109.46643 * 59.99579 * 3 2 1 32 32 H 1.08995 * 109.47456 * 299.99900 * 4 2 1 33 33 H 1.08998 * 109.47136 * 60.00204 * 4 2 1 34 34 H 1.09003 * 109.46847 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47058 * 180.02562 * 6 5 2 36 36 H 1.09004 * 109.47161 * 300.00223 * 6 5 2 37 37 H 1.09003 * 109.47033 * 60.00111 * 6 5 2 38 38 H 1.09001 * 109.47141 * 300.00288 * 7 5 2 39 39 H 1.09004 * 109.46992 * 59.99725 * 7 5 2 40 40 H 1.08998 * 109.47248 * 179.97438 * 7 5 2 41 41 H 1.09007 * 109.47081 * 60.00380 * 9 8 5 42 42 H 1.08997 * 109.47626 * 300.00544 * 9 8 5 43 43 H 1.09002 * 109.47222 * 305.00741 * 10 9 8 44 44 H 1.08999 * 109.47211 * 185.00309 * 10 9 8 45 45 H 1.08005 * 120.03532 * 359.97438 * 13 12 11 46 46 H 1.08999 * 109.47235 * 195.23311 * 17 16 14 47 47 H 0.96707 * 114.00227 * 300.00342 * 18 17 16 48 48 H 1.08002 * 119.96773 * 179.77071 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5211 9 6 2.0294 -3.1817 2.6513 10 6 1.4645 -4.5997 2.5465 11 8 2.0329 -5.2562 1.4116 12 6 1.6342 -6.5336 1.1738 13 6 0.7159 -7.1422 2.0154 14 6 0.3120 -8.4433 1.7713 15 9 -0.5832 -9.0373 2.5904 16 6 0.8207 -9.1343 0.6846 17 6 0.3752 -10.5487 0.4167 18 8 -0.9440 -10.5366 -0.1324 19 14 0.3753 -11.5124 2.0111 20 1 -0.5564 -10.8741 2.9754 21 1 -0.0643 -12.9061 1.7472 22 1 1.7462 -11.5249 2.5818 23 6 1.7405 -8.5300 -0.1522 24 6 2.1464 -7.2309 0.0879 25 35 3.3986 -6.4034 -1.0623 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5136 3.9323 36 1 1.8934 1.0277 3.0423 37 1 0.4400 0.0000 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1486 1.5205 40 1 4.3773 -1.3925 2.4109 41 1 1.6653 -2.7119 3.5651 42 1 3.1183 -3.2256 2.6744 43 1 0.3814 -4.5520 2.4338 44 1 1.7116 -5.1570 3.4501 45 1 0.3167 -6.6019 2.8611 46 1 1.0591 -11.0171 -0.2911 47 1 -1.6067 -10.1332 0.4449 48 1 2.1388 -9.0721 -0.9972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15096606_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:02:45 Heat of formation + Delta-G solvation = -178.198081 kcal Electronic energy + Delta-G solvation = -28991.068688 eV Core-core repulsion = 24744.866308 eV Total energy + Delta-G solvation = -4246.202380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 408.073 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.50816 -41.46163 -39.41229 -38.01951 -37.21051 -36.85133 -33.32572 -32.36798 -31.04370 -29.89476 -29.42236 -29.12814 -27.88264 -27.40665 -26.63231 -25.08794 -23.08550 -22.70182 -20.44899 -19.96610 -18.71804 -18.26152 -18.15420 -17.62500 -17.30670 -16.76087 -16.48151 -16.23005 -15.89311 -15.78625 -15.57784 -15.39743 -15.02447 -14.88779 -14.74673 -14.64454 -14.20731 -14.04689 -14.01798 -13.62154 -13.56631 -13.48506 -13.29529 -13.09026 -12.96368 -12.93659 -12.71196 -12.49836 -12.42349 -12.20554 -12.12882 -11.89777 -11.73217 -11.69883 -11.59605 -11.39870 -11.21986 -11.15844 -10.55756 -10.43899 -10.10358 -10.03319 -9.31346 -0.33401 -0.10121 0.61338 1.12686 1.35943 1.46901 1.51909 1.67999 1.82015 1.93516 2.00187 2.15506 2.36263 2.88162 3.28710 3.34796 3.52814 3.64679 3.72620 3.84034 3.98483 4.03453 4.10065 4.10556 4.14399 4.30758 4.43306 4.45801 4.47868 4.58561 4.60132 4.64036 4.68144 4.70483 4.72312 4.78998 4.84803 4.90238 4.98563 5.09115 5.10087 5.13073 5.25596 5.31922 5.32790 5.39788 5.47678 5.49319 5.57033 6.00290 6.43912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.617 6.617 9 C 0.087 3.913 10 C 0.051 3.949 11 O -0.281 6.281 12 C 0.193 3.807 13 C -0.239 4.239 14 C 0.149 3.851 15 F -0.120 7.120 16 C -0.186 4.186 17 C -0.072 4.072 18 O -0.533 6.533 19 Si 0.934 3.066 20 H -0.230 1.230 21 H -0.252 1.252 22 H -0.251 1.251 23 C -0.001 4.001 24 C -0.138 4.138 25 Br -0.020 7.020 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.152 0.848 46 H 0.123 0.877 47 H 0.376 0.624 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 1.294 3.211 3.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.577 6.577 9 C 0.011 3.989 10 C -0.024 4.024 11 O -0.193 6.193 12 C 0.144 3.856 13 C -0.259 4.259 14 C 0.129 3.871 15 F -0.098 7.098 16 C -0.188 4.188 17 C -0.183 4.183 18 O -0.338 6.338 19 Si 0.754 3.246 20 H -0.152 1.152 21 H -0.176 1.176 22 H -0.174 1.174 23 C -0.021 4.021 24 C -0.218 4.218 25 Br 0.065 6.935 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.170 0.830 46 H 0.141 0.859 47 H 0.223 0.777 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.129 0.781 2.847 3.161 hybrid contribution -0.561 0.842 0.738 1.252 sum 0.568 1.623 3.585 3.976 Atomic orbital electron populations 1.21510 0.93846 1.01974 1.01760 1.25771 1.00638 1.02575 1.12742 1.21557 1.00784 0.94923 1.02126 1.21507 1.00617 1.00351 0.96638 0.76735 0.63141 0.53275 0.65055 1.27052 1.07021 1.09646 1.17672 1.27024 1.24935 1.04692 1.04596 1.85410 1.79062 1.46012 1.47172 1.22068 0.99513 0.89360 0.87921 1.23199 0.99510 0.92322 0.87402 1.86311 1.63752 1.22064 1.47133 1.18303 0.91028 0.84523 0.91743 1.21130 1.04472 0.95740 1.04603 1.17364 0.89498 0.91275 0.88948 1.91603 1.65159 1.82209 1.70873 1.20195 1.02691 0.99100 0.96862 1.24875 0.87323 0.95148 1.10912 1.86556 1.16215 1.83654 1.47380 0.86174 0.82634 0.79506 0.76242 1.15245 1.17629 1.17425 1.20757 0.92860 0.91291 0.97221 1.21155 1.05203 0.96564 0.98913 1.96793 1.54577 1.80862 1.61270 0.92763 0.92781 0.92186 0.92515 0.92480 0.92568 0.91999 0.92838 0.92720 0.91527 0.90606 0.90839 0.90691 0.90758 0.91520 0.90176 0.91182 0.90168 0.90132 0.82994 0.85888 0.77702 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.13 0.53 -90.62 -0.05 0.08 16 3 C -0.14 0.09 7.85 37.16 0.29 0.39 16 4 C -0.13 -0.06 7.85 37.16 0.29 0.23 16 5 Si 1.29 -1.89 8.45 -169.99 -1.44 -3.33 16 6 C -0.51 0.80 8.50 101.05 0.86 1.66 16 7 C -0.51 0.44 8.50 101.05 0.86 1.30 16 8 O -0.62 0.19 8.52 -40.08 -0.34 -0.15 16 9 C 0.09 -0.20 5.50 37.16 0.20 0.01 16 10 C 0.05 -0.10 5.12 37.16 0.19 0.09 16 11 O -0.28 -0.25 9.44 -24.33 -0.23 -0.47 16 12 C 0.19 0.18 6.68 -39.21 -0.26 -0.08 16 13 C -0.24 0.06 9.02 -39.37 -0.35 -0.30 16 14 C 0.15 0.04 6.62 -39.44 -0.26 -0.22 16 15 F -0.12 -0.05 12.59 2.25 0.03 -0.02 16 16 C -0.19 -0.02 4.79 -104.53 -0.50 -0.52 16 17 C -0.07 0.04 2.81 36.00 0.10 0.14 16 18 O -0.53 -0.30 12.88 -35.23 -0.45 -0.76 16 19 Si 0.93 -0.07 26.08 -169.99 -4.43 -4.51 16 20 H -0.23 -0.09 5.28 56.52 0.30 0.21 16 21 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 22 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 23 C 0.00 0.00 9.40 -39.59 -0.37 -0.37 16 24 C -0.14 -0.18 6.24 -39.37 -0.25 -0.42 16 25 Br -0.02 -0.04 33.16 -68.01 -2.25 -2.29 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.02 7.97 -51.93 -0.41 -0.40 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 30 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 0.06 7.96 -51.93 -0.41 -0.35 16 33 H 0.05 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.05 0.00 7.79 -51.93 -0.40 -0.41 16 35 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 36 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.09 7.48 -51.93 -0.39 -0.48 16 41 H 0.08 -0.38 7.22 -51.92 -0.37 -0.75 16 42 H 0.07 -0.20 7.21 -51.93 -0.37 -0.58 16 43 H 0.08 -0.21 7.66 -51.93 -0.40 -0.61 16 44 H 0.08 -0.35 7.66 -51.93 -0.40 -0.75 16 45 H 0.15 -0.38 6.30 -52.48 -0.33 -0.71 16 46 H 0.12 -0.25 7.77 -51.93 -0.40 -0.65 16 47 H 0.38 -0.78 8.44 45.56 0.38 -0.40 16 48 H 0.15 -0.26 8.00 -52.49 -0.42 -0.68 16 LS Contribution 405.75 15.07 6.11 6.11 Total: 0.00 -5.18 405.75 -9.28 -14.46 By element: Atomic # 1 Polarization: -4.01 SS G_CDS: -7.32 Total: -11.33 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 1.04 Total: 2.27 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -1.02 Total: -1.38 kcal Atomic # 9 Polarization: -0.05 SS G_CDS: 0.03 Total: -0.02 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: -5.87 Total: -7.83 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.25 Total: -2.29 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -5.18 -9.28 -14.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.736 kcal (2) G-P(sol) polarization free energy of solvation -5.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds