Wall clock time and date at job start Tue Mar 9 2021 16:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 C 1.53001 * 109.46856 * 239.99983 * 2 1 3 5 5 Si 1.86301 * 109.47052 * 120.00285 * 2 1 3 6 6 C 1.86308 * 109.46966 * 299.99763 * 5 2 1 7 7 C 1.86299 * 109.47218 * 179.97438 * 5 2 1 8 8 O 1.63095 * 109.47355 * 59.99626 * 5 2 1 9 9 C 1.42897 * 114.00170 * 179.97438 * 8 5 2 10 10 C 1.53000 * 109.47496 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.46988 * 64.99996 * 10 9 8 12 12 C 1.35917 * 117.00198 * 179.97438 * 11 10 9 13 13 C 1.38637 * 120.04614 * 359.97438 * 12 11 10 14 14 C 1.38400 * 119.93139 * 180.02562 * 13 12 11 15 15 F 1.35102 * 119.98923 * 180.02562 * 14 13 12 16 16 C 1.38463 * 120.02032 * 359.74544 * 14 13 12 17 17 C 1.50696 * 119.95645 * 180.27601 * 16 14 13 18 18 O 1.42895 * 109.47146 * 75.23041 * 17 16 14 19 19 Si 1.86307 * 109.46997 * 315.23303 * 17 16 14 20 20 H 1.48504 * 109.47071 * 59.99759 * 19 17 16 21 21 H 1.48503 * 109.47227 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46973 * 300.00005 * 19 17 16 23 23 C 1.38256 * 120.09071 * 0.51180 * 16 14 13 24 24 C 1.38205 * 120.07050 * 359.48457 * 23 16 14 25 25 Br 1.89095 * 120.01094 * 180.27942 * 24 23 16 26 26 H 1.09000 * 109.46841 * 299.99973 * 1 2 3 27 27 H 1.08998 * 109.47081 * 59.99846 * 1 2 3 28 28 H 1.08995 * 109.47006 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46874 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47138 * 300.00118 * 3 2 1 31 31 H 1.09000 * 109.46643 * 59.99579 * 3 2 1 32 32 H 1.08995 * 109.47456 * 299.99900 * 4 2 1 33 33 H 1.08998 * 109.47136 * 60.00204 * 4 2 1 34 34 H 1.09003 * 109.46847 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47058 * 180.02562 * 6 5 2 36 36 H 1.09004 * 109.47161 * 300.00223 * 6 5 2 37 37 H 1.09003 * 109.47033 * 60.00111 * 6 5 2 38 38 H 1.09001 * 109.47141 * 300.00288 * 7 5 2 39 39 H 1.09004 * 109.46992 * 59.99725 * 7 5 2 40 40 H 1.08998 * 109.47248 * 179.97438 * 7 5 2 41 41 H 1.09007 * 109.47081 * 60.00380 * 9 8 5 42 42 H 1.08997 * 109.47626 * 300.00544 * 9 8 5 43 43 H 1.09002 * 109.47222 * 305.00741 * 10 9 8 44 44 H 1.08999 * 109.47211 * 185.00309 * 10 9 8 45 45 H 1.08005 * 120.03532 * 359.97438 * 13 12 11 46 46 H 1.08999 * 109.47235 * 195.23311 * 17 16 14 47 47 H 0.96707 * 114.00227 * 300.00342 * 18 17 16 48 48 H 1.08002 * 119.96773 * 179.77071 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5211 9 6 2.0294 -3.1817 2.6513 10 6 1.4645 -4.5997 2.5465 11 8 2.0329 -5.2562 1.4116 12 6 1.6342 -6.5336 1.1738 13 6 0.7159 -7.1422 2.0154 14 6 0.3120 -8.4433 1.7713 15 9 -0.5832 -9.0373 2.5904 16 6 0.8207 -9.1343 0.6846 17 6 0.3752 -10.5487 0.4167 18 8 -0.9440 -10.5366 -0.1324 19 14 0.3753 -11.5124 2.0111 20 1 -0.5564 -10.8741 2.9754 21 1 -0.0643 -12.9061 1.7472 22 1 1.7462 -11.5249 2.5818 23 6 1.7405 -8.5300 -0.1522 24 6 2.1464 -7.2309 0.0879 25 35 3.3986 -6.4034 -1.0623 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -0.5136 3.9323 36 1 1.8934 1.0277 3.0423 37 1 0.4400 0.0000 3.0423 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1486 1.5205 40 1 4.3773 -1.3925 2.4109 41 1 1.6653 -2.7119 3.5651 42 1 3.1183 -3.2256 2.6744 43 1 0.3814 -4.5520 2.4338 44 1 1.7116 -5.1570 3.4501 45 1 0.3167 -6.6019 2.8611 46 1 1.0591 -11.0171 -0.2911 47 1 -1.6067 -10.1332 0.4449 48 1 2.1388 -9.0721 -0.9972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096606_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:02:44 Heat of formation + Delta-G solvation = -169.657322 kcal Electronic energy + Delta-G solvation = -28990.698333 eV Core-core repulsion = 24744.866308 eV Total energy + Delta-G solvation = -4245.832025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 408.073 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.51065 -41.41004 -39.34661 -37.91383 -37.16900 -36.82230 -33.33457 -32.31923 -30.91599 -29.88345 -29.30755 -29.05404 -27.83787 -27.37596 -26.59130 -24.98098 -22.96315 -22.67786 -20.41817 -19.90736 -18.69486 -18.13741 -18.10619 -17.57710 -17.28396 -16.72010 -16.40832 -16.14890 -15.76612 -15.72652 -15.55281 -15.34165 -14.96825 -14.85300 -14.74324 -14.63678 -14.16806 -13.97868 -13.94433 -13.51805 -13.50893 -13.36104 -13.16869 -13.00772 -12.95618 -12.91965 -12.62205 -12.44888 -12.39818 -12.18791 -12.09255 -11.79655 -11.73258 -11.69264 -11.50513 -11.27917 -11.27153 -11.19893 -10.54287 -10.30576 -10.04913 -10.01856 -9.31383 -0.33415 -0.07160 0.57365 1.14761 1.45556 1.49683 1.53105 1.78770 1.90180 1.94999 2.14871 2.16937 2.48127 2.90656 3.34178 3.43315 3.60750 3.74320 3.90969 4.07207 4.10471 4.12553 4.13468 4.27523 4.36917 4.42703 4.46916 4.55616 4.61025 4.66868 4.75013 4.75422 4.79401 4.79821 4.80996 4.82341 4.83302 4.93361 4.99928 5.09115 5.09351 5.20075 5.33216 5.35592 5.40899 5.43550 5.49982 5.60519 5.65832 6.10011 6.57223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.318 2.682 6 C -0.515 4.515 7 C -0.520 4.520 8 O -0.636 6.636 9 C 0.074 3.926 10 C 0.040 3.960 11 O -0.297 6.297 12 C 0.186 3.814 13 C -0.237 4.237 14 C 0.143 3.857 15 F -0.122 7.122 16 C -0.189 4.189 17 C -0.069 4.069 18 O -0.547 6.547 19 Si 0.961 3.039 20 H -0.236 1.236 21 H -0.272 1.272 22 H -0.262 1.262 23 C -0.003 4.003 24 C -0.153 4.153 25 Br -0.033 7.033 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.173 0.827 46 H 0.138 0.862 47 H 0.385 0.615 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 1.493 4.373 4.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.448 2.552 6 C -0.617 4.617 7 C -0.621 4.621 8 O -0.596 6.596 9 C -0.001 4.001 10 C -0.034 4.034 11 O -0.210 6.210 12 C 0.137 3.863 13 C -0.257 4.257 14 C 0.123 3.877 15 F -0.100 7.100 16 C -0.192 4.192 17 C -0.179 4.179 18 O -0.354 6.354 19 Si 0.785 3.215 20 H -0.159 1.159 21 H -0.198 1.198 22 H -0.187 1.187 23 C -0.022 4.022 24 C -0.233 4.233 25 Br 0.053 6.947 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.191 0.809 46 H 0.156 0.844 47 H 0.234 0.766 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.987 0.993 4.003 4.240 hybrid contribution -0.532 0.780 0.393 1.022 sum 0.456 1.772 4.396 4.761 Atomic orbital electron populations 1.21527 0.94199 1.01670 1.01862 1.25971 1.00449 1.03012 1.13273 1.21598 1.01176 0.94727 1.02242 1.21516 1.00808 0.99897 0.97040 0.76159 0.62172 0.52757 0.64152 1.27048 1.07006 1.09802 1.17831 1.27139 1.25769 1.04782 1.04388 1.85404 1.79313 1.46604 1.48261 1.22380 1.00037 0.89307 0.88380 1.23500 0.99828 0.92572 0.87522 1.86300 1.64217 1.22030 1.48415 1.18423 0.91270 0.84767 0.91854 1.21315 1.03889 0.95570 1.04904 1.17494 0.89566 0.91599 0.89045 1.91597 1.65226 1.82258 1.70922 1.20270 1.02692 0.99333 0.96882 1.24883 0.87300 0.94806 1.10941 1.86529 1.16838 1.83854 1.48134 0.85798 0.81431 0.78103 0.76165 1.15914 1.19751 1.18655 1.20933 0.92675 0.91031 0.97602 1.21306 1.05589 0.97150 0.99277 1.96767 1.55110 1.81172 1.61677 0.91790 0.93572 0.92667 0.91991 0.93289 0.91570 0.92856 0.93502 0.92429 0.90475 0.90461 0.90882 0.91754 0.90535 0.90878 0.87445 0.90797 0.89678 0.87702 0.80928 0.84418 0.76584 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 2 C -0.39 0.06 0.53 -10.79 -0.01 0.06 16 3 C -0.14 0.15 7.85 71.98 0.56 0.72 16 4 C -0.14 -0.29 7.85 71.98 0.56 0.28 16 5 Si 1.32 -4.24 8.45 68.60 0.58 -3.66 16 6 C -0.51 2.25 8.50 113.37 0.96 3.21 16 7 C -0.52 0.93 8.50 113.37 0.96 1.89 16 8 O -0.64 0.55 8.52 -144.34 -1.23 -0.68 16 9 C 0.07 -0.40 5.50 71.98 0.40 -0.01 16 10 C 0.04 -0.20 5.12 71.98 0.37 0.17 16 11 O -0.30 -0.50 9.44 -87.97 -0.83 -1.33 16 12 C 0.19 0.34 6.68 22.51 0.15 0.49 16 13 C -0.24 0.26 9.02 22.40 0.20 0.47 16 14 C 0.14 0.02 6.62 22.36 0.15 0.17 16 15 F -0.12 -0.05 12.59 44.97 0.57 0.52 16 16 C -0.19 0.00 4.79 -19.81 -0.09 -0.09 16 17 C -0.07 0.09 2.81 71.23 0.20 0.29 16 18 O -0.55 -0.46 12.88 -148.98 -1.92 -2.38 16 19 Si 0.96 -0.01 26.08 68.60 1.79 1.78 16 20 H -0.24 -0.18 5.28 99.48 0.53 0.35 16 21 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 22 H -0.26 -0.46 7.11 99.48 0.71 0.25 16 23 C 0.00 0.00 9.40 22.27 0.21 0.21 16 24 C -0.15 -0.44 6.24 22.41 0.14 -0.30 16 25 Br -0.03 -0.14 33.16 -20.37 -0.68 -0.81 16 26 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 27 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.05 0.07 7.97 -2.39 -0.02 0.05 16 29 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 30 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.05 0.19 7.96 -2.39 -0.02 0.18 16 33 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.06 0.07 7.79 -2.39 -0.02 0.05 16 35 H 0.08 -0.49 7.48 -2.39 -0.02 -0.51 16 36 H 0.08 -0.34 7.79 -2.38 -0.02 -0.36 16 37 H 0.07 -0.28 7.79 -2.39 -0.02 -0.30 16 38 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 39 H 0.08 -0.18 7.79 -2.38 -0.02 -0.20 16 40 H 0.07 -0.24 7.48 -2.39 -0.02 -0.25 16 41 H 0.11 -1.22 7.22 -2.38 -0.02 -1.23 16 42 H 0.07 -0.48 7.21 -2.39 -0.02 -0.50 16 43 H 0.09 -0.53 7.66 -2.39 -0.02 -0.55 16 44 H 0.11 -1.09 7.66 -2.39 -0.02 -1.11 16 45 H 0.17 -1.08 6.30 -2.91 -0.02 -1.10 16 46 H 0.14 -0.64 7.77 -2.39 -0.02 -0.66 16 47 H 0.39 -1.66 8.44 -74.05 -0.63 -2.28 16 48 H 0.17 -0.59 8.00 -2.91 -0.02 -0.62 16 Total: 0.00 -12.31 405.75 4.52 -7.79 By element: Atomic # 1 Polarization: -10.17 SS G_CDS: 0.90 Total: -9.26 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.34 Total: 8.05 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -3.98 Total: -4.40 kcal Atomic # 9 Polarization: -0.05 SS G_CDS: 0.57 Total: 0.52 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.37 Total: -1.88 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.68 Total: -0.81 kcal Total: -12.31 4.52 -7.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.869 kcal (2) G-P(sol) polarization free energy of solvation -12.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds