Wall clock time and date at job start Tue Mar 9 2021 16:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52996 * 109.47180 * 239.99887 * 2 1 3 5 5 O 1.42906 * 109.46927 * 119.99667 * 2 1 3 6 6 C 1.42896 * 113.99728 * 60.00515 * 5 2 1 7 7 H 1.09004 * 112.90955 * 341.24492 * 6 5 2 8 8 C 1.53784 * 113.61566 * 112.49953 * 6 5 2 9 9 C 1.53778 * 87.08081 * 139.97943 * 8 6 5 10 10 H 1.08999 * 113.69218 * 89.12660 * 9 8 6 11 11 C 1.53001 * 113.61526 * 220.01868 * 9 8 6 12 12 O 1.42901 * 109.47278 * 272.50133 * 11 9 8 13 13 C 1.35914 * 116.99949 * 179.97438 * 12 11 9 14 14 C 1.38805 * 120.04458 * 179.71978 * 13 12 11 15 15 Br 1.89100 * 120.00971 * 0.02562 * 14 13 12 16 16 C 1.38236 * 119.97663 * 179.79400 * 14 13 12 17 17 C 1.38218 * 120.07102 * 0.45985 * 16 14 13 18 18 C 1.50696 * 119.95302 * 179.77248 * 17 16 14 19 19 O 1.42898 * 109.47254 * 255.02221 * 18 17 16 20 20 Si 1.86304 * 109.47297 * 15.02146 * 18 17 16 21 21 C 1.38506 * 120.09172 * 359.79284 * 17 16 14 22 22 F 1.35092 * 119.98880 * 179.97438 * 21 17 16 23 23 C 1.38354 * 120.02058 * 359.97438 * 21 17 16 24 24 C 1.53778 * 87.08449 * 334.56700 * 9 8 6 25 25 H 1.09003 * 109.47430 * 299.99918 * 1 2 3 26 26 H 1.08995 * 109.47096 * 60.00106 * 1 2 3 27 27 H 1.09005 * 109.46779 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46951 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47197 * 299.99833 * 3 2 1 30 30 H 1.08996 * 109.46976 * 60.00263 * 3 2 1 31 31 H 1.09001 * 109.46946 * 300.00104 * 4 2 1 32 32 H 1.08995 * 109.47100 * 60.00009 * 4 2 1 33 33 H 1.08999 * 109.46832 * 179.97438 * 4 2 1 34 34 H 1.08993 * 113.61313 * 254.52539 * 8 6 5 35 35 H 1.09000 * 113.61578 * 25.43271 * 8 6 5 36 36 H 1.09008 * 109.46870 * 32.49758 * 11 9 8 37 37 H 1.09000 * 109.47055 * 152.49586 * 11 9 8 38 38 H 1.08000 * 119.96585 * 180.21111 * 16 14 13 39 39 H 1.09004 * 109.47356 * 135.02520 * 18 17 16 40 40 H 0.96706 * 114.00287 * 60.00169 * 19 18 17 41 41 H 1.48509 * 109.99793 * 180.02562 * 20 18 17 42 42 H 1.48501 * 109.99906 * 301.31920 * 20 18 17 43 43 H 1.07995 * 120.03547 * 180.02562 * 23 21 17 44 44 H 1.08998 * 113.61879 * 270.88747 * 24 9 8 45 45 H 1.08999 * 113.61887 * 139.97854 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7335 -3.0478 1.1214 9 6 2.0563 -3.8556 2.2410 10 1 1.3245 -4.5778 1.8788 11 6 3.0420 -4.4602 3.2429 12 8 3.4765 -5.7375 2.7721 13 6 4.3619 -6.4136 3.5508 14 6 4.8214 -7.6627 3.1568 15 35 4.2163 -8.4249 1.5354 16 6 5.7252 -8.3472 3.9477 17 6 6.1647 -7.7933 5.1354 18 6 7.1460 -8.5441 5.9981 19 8 6.4657 -9.0875 7.1311 20 14 7.9100 -9.9269 5.0105 21 6 5.7040 -6.5494 5.5339 22 9 6.1346 -6.0102 6.6953 23 6 4.8032 -5.8588 4.7428 24 6 1.4333 -2.5311 2.7124 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7208 -1.2494 34 1 2.7463 -3.5604 0.1596 35 1 3.7073 -2.6456 1.4009 36 1 3.9029 -3.8000 3.3490 37 1 2.5520 -4.5765 4.2096 38 1 6.0852 -9.3176 3.6393 39 1 7.9278 -7.8637 6.3356 40 1 5.7550 -9.7033 6.9053 41 1 8.8793 -10.6754 5.8504 42 1 6.8512 -10.8441 4.5177 43 1 4.4442 -4.8887 5.0531 44 1 2.0515 -1.9876 3.4269 45 1 0.3965 -2.6266 3.0350 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096606_14598384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:03:06 Heat of formation + Delta-G solvation = -98.246441 kcal Electronic energy + Delta-G solvation = -27900.489204 eV Core-core repulsion = 23654.196750 eV Total energy + Delta-G solvation = -4246.292454 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.072 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.18945 -41.62708 -40.79718 -39.39900 -38.24147 -37.37157 -33.93254 -33.35400 -32.37444 -30.36542 -29.48074 -28.35461 -28.30452 -26.68612 -26.47392 -24.76399 -23.23774 -22.67917 -20.85266 -20.65696 -19.81763 -18.66015 -18.21803 -17.65053 -17.37815 -17.23290 -16.84532 -16.58427 -16.47181 -16.00007 -15.93669 -15.74030 -15.45365 -15.35385 -14.84128 -14.53730 -14.49014 -14.04918 -13.89214 -13.65618 -13.43165 -13.30543 -13.10684 -13.02229 -12.85784 -12.75060 -12.64204 -12.53825 -12.43288 -12.16793 -11.92137 -11.84718 -11.73758 -11.70022 -11.35940 -11.28159 -11.18521 -10.72440 -10.35414 -10.13136 -9.42808 -4.96184 -0.36282 -0.16972 0.51090 1.20042 1.53502 1.80041 1.90554 2.05865 2.74225 2.91765 3.25890 3.33076 3.44370 3.50418 3.56048 3.68820 3.77045 3.79049 3.91115 3.98011 4.00866 4.07802 4.11737 4.21486 4.29197 4.34177 4.46618 4.50254 4.56610 4.62201 4.65110 4.68578 4.78352 4.78840 4.79517 4.81895 4.85479 4.91875 4.94483 5.02667 5.12826 5.16140 5.27767 5.32344 5.33387 5.39442 6.00005 6.42264 6.42535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.381 6.381 6 C 0.058 3.942 7 H 0.099 0.901 8 C -0.147 4.147 9 C -0.101 4.101 10 H 0.109 0.891 11 C 0.062 3.938 12 O -0.299 6.299 13 C 0.192 3.808 14 C -0.147 4.147 15 Br -0.025 7.025 16 C -0.023 4.023 17 C -0.185 4.185 18 C -0.081 4.081 19 O -0.546 6.546 20 Si 0.770 3.230 21 C 0.170 3.830 22 F -0.131 7.131 23 C -0.241 4.241 24 C -0.122 4.122 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.120 0.880 40 H 0.388 0.612 41 H -0.295 1.295 42 H -0.264 1.264 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 1.659 -3.674 4.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.301 6.301 6 C 0.000 4.000 7 H 0.117 0.883 8 C -0.185 4.185 9 C -0.119 4.119 10 H 0.127 0.873 11 C -0.012 4.012 12 O -0.211 6.211 13 C 0.143 3.857 14 C -0.227 4.227 15 Br 0.060 6.940 16 C -0.042 4.042 17 C -0.187 4.187 18 C -0.189 4.189 19 O -0.354 6.354 20 Si 0.673 3.327 21 C 0.150 3.850 22 F -0.110 7.110 23 C -0.261 4.261 24 C -0.160 4.160 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.183 0.817 39 H 0.138 0.862 40 H 0.237 0.763 41 H -0.222 1.222 42 H -0.190 1.190 43 H 0.183 0.817 44 H 0.110 0.890 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.335 0.988 -4.052 4.379 hybrid contribution -0.842 0.138 1.350 1.597 sum -2.177 1.125 -2.702 3.648 Atomic orbital electron populations 1.22451 0.94982 1.02769 1.03221 1.21662 0.93664 0.93290 0.85383 1.21795 1.01627 0.93294 1.02978 1.22440 1.01808 1.00955 0.97897 1.88010 1.74241 1.24223 1.43597 1.23679 0.97266 0.81221 0.97801 0.88306 1.23590 0.99071 0.96562 0.99290 1.22253 0.97723 0.95802 0.96149 0.87307 1.23158 0.98220 0.81192 0.98656 1.86227 1.56002 1.32932 1.45953 1.18335 0.88493 0.90092 0.88780 1.21132 1.06801 0.96377 0.98374 1.96780 1.88680 1.82035 1.26497 1.20951 0.92499 0.99635 0.91119 1.20226 1.04558 0.95726 0.98189 1.25183 0.96324 1.05384 0.92009 1.86622 1.52830 1.64274 1.31689 0.93946 0.79888 0.76103 0.82782 1.17416 0.93995 0.91682 0.81872 1.91539 1.87894 1.85621 1.45920 1.21303 1.04264 1.04338 0.96207 1.23210 1.02348 0.93779 0.96652 0.92155 0.90510 0.91814 0.92401 0.89826 0.92272 0.92080 0.90677 0.92431 0.90959 0.89875 0.90482 0.90012 0.81686 0.86166 0.76265 1.22228 1.19002 0.81693 0.89032 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.41 8.38 71.98 0.60 1.01 16 2 C 0.10 -0.02 1.11 -10.79 -0.01 -0.04 16 3 C -0.14 0.11 8.84 71.98 0.64 0.75 16 4 C -0.17 0.28 8.38 71.98 0.60 0.89 16 5 O -0.38 -1.04 10.00 -148.98 -1.49 -2.52 16 6 C 0.06 -0.08 2.82 31.12 0.09 0.00 16 7 H 0.10 -0.30 5.55 -2.39 -0.01 -0.32 16 8 C -0.15 0.25 7.46 31.12 0.23 0.48 16 9 C -0.10 0.37 4.01 -10.27 -0.04 0.33 16 10 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C 0.06 -0.20 4.58 71.98 0.33 0.12 16 12 O -0.30 -0.33 9.47 -92.58 -0.88 -1.20 16 13 C 0.19 0.31 6.68 22.51 0.15 0.46 16 14 C -0.15 -0.25 6.24 22.41 0.14 -0.11 16 15 Br -0.03 -0.06 33.15 -20.37 -0.68 -0.73 16 16 C -0.02 0.01 8.39 22.26 0.19 0.20 16 17 C -0.18 -0.10 5.27 -19.81 -0.10 -0.21 16 18 C -0.08 -0.01 2.45 71.23 0.17 0.17 16 19 O -0.55 -1.79 12.88 -148.98 -1.92 -3.71 16 20 Si 0.77 -2.19 30.24 68.60 2.07 -0.12 16 21 C 0.17 0.46 7.24 22.36 0.16 0.62 16 22 F -0.13 -0.77 16.75 44.97 0.75 -0.02 16 23 C -0.24 -0.14 9.02 22.40 0.20 0.07 16 24 C -0.12 0.44 7.47 31.12 0.23 0.68 16 25 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 -0.20 6.25 -2.38 -0.01 -0.22 16 28 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 29 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.13 7.02 -2.39 -0.02 -0.14 16 32 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.08 0.01 7.90 -2.39 -0.02 -0.01 16 36 H 0.08 -0.33 7.36 -2.38 -0.02 -0.35 16 37 H 0.08 -0.45 7.66 -2.39 -0.02 -0.47 16 38 H 0.17 -0.63 4.85 -2.91 -0.01 -0.64 16 39 H 0.12 -0.02 7.90 -2.38 -0.02 -0.04 16 40 H 0.39 -1.27 8.70 -74.05 -0.64 -1.91 16 41 H -0.29 -1.37 7.11 99.48 0.71 -0.66 16 42 H -0.26 0.29 6.68 99.48 0.66 0.96 16 43 H 0.17 -0.50 6.30 -2.91 -0.02 -0.52 16 44 H 0.09 -0.26 8.10 -2.39 -0.02 -0.28 16 45 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -11.38 383.62 1.81 -9.56 By element: Atomic # 1 Polarization: -7.05 SS G_CDS: 0.36 Total: -6.68 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 3.58 Total: 5.42 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -4.28 Total: -7.43 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: 2.07 Total: -0.12 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.68 Total: -0.73 kcal Total: -11.38 1.81 -9.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_14598384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.683 kcal (2) G-P(sol) polarization free energy of solvation -11.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds