Wall clock time and date at job start Tue Mar 9 2021 16:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35915 * 117.00092 * 2 1 4 4 C 1.38627 * 120.01996 * 5.27811 * 3 2 1 5 5 C 1.38616 * 119.90743 * 180.27999 * 4 3 2 6 6 O 1.35922 * 120.03740 * 179.72697 * 5 4 3 7 7 C 1.42908 * 116.99550 * 6.14798 * 6 5 4 8 8 Si 1.86305 * 109.46972 * 77.84642 * 7 6 5 9 9 C 1.86292 * 109.47150 * 65.57729 * 8 7 6 10 10 C 1.86296 * 109.46917 * 185.58173 * 8 7 6 11 11 C 1.86300 * 109.46825 * 305.57735 * 8 7 6 12 12 C 1.38843 * 119.93844 * 359.47478 * 5 4 3 13 13 Cl 1.73601 * 119.98660 * 180.25166 * 12 5 4 14 14 C 1.38281 * 120.02985 * 0.53053 * 12 5 4 15 15 C 1.38168 * 120.09476 * 359.74137 * 14 12 5 16 16 C 1.50696 * 119.97069 * 179.97438 * 15 14 12 17 17 O 1.42894 * 109.47745 * 254.98588 * 16 15 14 18 18 Si 1.86310 * 109.46860 * 14.98563 * 16 15 14 19 19 H 1.48496 * 109.46927 * 59.99721 * 18 16 15 20 20 H 1.48498 * 109.46974 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46698 * 299.99723 * 18 16 15 22 22 H 1.09004 * 109.46757 * 301.51677 * 1 2 3 23 23 H 1.08993 * 109.47043 * 61.51754 * 1 2 3 24 24 H 1.08998 * 109.47222 * 181.51777 * 1 2 3 25 25 H 1.08003 * 120.04363 * 0.02562 * 4 3 2 26 26 H 1.08993 * 109.47211 * 197.84074 * 7 6 5 27 27 H 1.08997 * 109.46757 * 317.84765 * 7 6 5 28 28 H 1.08994 * 109.47455 * 60.00287 * 9 8 7 29 29 H 1.09010 * 109.47107 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47571 * 299.99729 * 9 8 7 31 31 H 1.08996 * 109.47353 * 59.99995 * 10 8 7 32 32 H 1.09001 * 109.47090 * 179.97438 * 10 8 7 33 33 H 1.08994 * 109.46930 * 299.99248 * 10 8 7 34 34 H 1.08998 * 109.47564 * 53.94975 * 11 8 7 35 35 H 1.09001 * 109.47471 * 173.94565 * 11 8 7 36 36 H 1.08995 * 109.47475 * 293.94398 * 11 8 7 37 37 H 1.08000 * 119.94991 * 179.72667 * 14 12 5 38 38 H 1.09004 * 109.47344 * 134.98040 * 16 15 14 39 39 H 0.96697 * 114.00396 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2961 2.3716 0.1104 5 6 1.9273 3.6057 0.1043 6 8 1.1940 4.7455 0.2068 7 6 -0.2058 4.5963 0.4532 8 14 -0.4808 4.2007 2.2529 9 6 0.0352 5.6564 3.2946 10 6 -2.2857 3.8398 2.5405 11 6 0.5332 2.7102 2.7230 12 6 3.3099 3.6762 -0.0013 13 17 4.1023 5.2209 -0.0025 14 6 4.0556 2.5169 -0.1114 15 6 3.4273 1.2864 -0.1112 16 6 4.2427 0.0248 -0.2319 17 8 4.1010 -0.5098 -1.5494 18 14 6.0363 0.4113 0.0919 19 1 6.1835 0.9668 1.4611 20 1 6.8397 -0.8320 -0.0265 21 1 6.5150 1.4070 -0.9006 22 1 -0.3633 0.5372 0.8761 23 1 -0.3633 0.4901 -0.9032 24 1 -0.3633 -1.0273 0.0272 25 1 0.2210 2.3145 0.1969 26 1 -0.7197 5.5243 0.2027 27 1 -0.5984 3.7861 -0.1610 28 1 -0.5580 6.5285 3.0196 29 1 -0.1253 5.4248 4.3476 30 1 1.0912 5.8676 3.1264 31 1 -2.5875 2.9880 1.9310 32 1 -2.4465 3.6078 3.5934 33 1 -2.8789 4.7118 2.2655 34 1 1.5758 2.8807 2.4549 35 1 0.4570 2.5430 3.7974 36 1 0.1600 1.8346 2.1918 37 1 5.1307 2.5735 -0.1980 38 1 3.8913 -0.7060 0.4965 39 1 4.6002 -1.3243 -1.6993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15096628_3095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:35:51 Heat of formation + Delta-G solvation = -113.473575 kcal Electronic energy + Delta-G solvation = -21988.749148 eV Core-core repulsion = 18661.438477 eV Total energy + Delta-G solvation = -3327.310672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86873 -39.96122 -38.40830 -37.48912 -36.71801 -32.35629 -31.32253 -29.90663 -28.89874 -28.59196 -28.34637 -27.82142 -25.87551 -23.46434 -22.41263 -19.92231 -18.44982 -18.26420 -17.44391 -17.10731 -16.92252 -16.59924 -16.17049 -15.82920 -15.49870 -14.80217 -14.46876 -14.41848 -14.26777 -14.12788 -13.97261 -13.90390 -13.53975 -13.47437 -13.35828 -13.24229 -13.17167 -12.90258 -12.67942 -12.47084 -12.22776 -12.09892 -11.75750 -11.64719 -11.51537 -11.06004 -10.97107 -10.77448 -10.23171 -9.61434 -8.85414 0.07447 0.19166 1.16787 1.30464 1.32454 1.45188 1.51842 1.54237 1.61877 1.92566 2.16475 2.25289 2.36306 2.44912 3.45509 3.59801 3.72161 3.92876 3.96978 4.07838 4.11054 4.23423 4.27868 4.39895 4.41951 4.51079 4.52440 4.55892 4.65844 4.68627 4.69909 4.73177 4.86544 4.91293 5.10828 5.29086 5.36418 5.44757 5.48930 6.02726 6.30389 6.68473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.297 6.297 3 C 0.201 3.799 4 C -0.285 4.285 5 C 0.181 3.819 6 O -0.275 6.275 7 C -0.248 4.248 8 Si 0.984 3.016 9 C -0.443 4.443 10 C -0.447 4.447 11 C -0.448 4.448 12 C -0.104 4.104 13 Cl -0.053 7.053 14 C -0.040 4.040 15 C -0.136 4.136 16 C -0.062 4.062 17 O -0.541 6.541 18 Si 0.932 3.068 19 H -0.245 1.245 20 H -0.252 1.252 21 H -0.245 1.245 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.149 0.851 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 -2.588 1.873 4.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.209 6.209 3 C 0.154 3.846 4 C -0.305 4.305 5 C 0.133 3.867 6 O -0.187 6.187 7 C -0.368 4.368 8 Si 1.180 2.820 9 C -0.551 4.551 10 C -0.555 4.555 11 C -0.556 4.556 12 C -0.131 4.131 13 Cl -0.024 7.024 14 C -0.058 4.058 15 C -0.137 4.137 16 C -0.172 4.172 17 O -0.347 6.347 18 Si 0.754 3.246 19 H -0.168 1.168 20 H -0.176 1.176 21 H -0.168 1.168 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.166 0.834 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.095 0.905 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.518 -1.713 1.903 3.592 hybrid contribution -0.585 -0.378 -0.139 0.711 sum -3.104 -2.092 1.764 4.138 Atomic orbital electron populations 1.23250 0.78115 1.04718 1.01576 1.86168 1.21442 1.25878 1.87410 1.18441 0.91039 0.83982 0.91186 1.21231 1.01241 0.91231 1.16782 1.18363 0.89479 0.85783 0.93071 1.86144 1.20042 1.27199 1.85319 1.28277 0.81074 1.07590 1.19897 0.79921 0.67978 0.68719 0.65351 1.25996 1.06377 1.13605 1.09168 1.26050 1.18708 1.05265 1.05456 1.26477 1.09657 1.13636 1.05859 1.19809 0.89413 0.88139 1.15778 1.98375 1.79522 1.27218 1.97321 1.20627 1.00178 0.89276 0.95758 1.18332 0.90877 0.93677 1.10853 1.24417 1.09182 0.95290 0.88360 1.86528 1.74190 1.45119 1.28883 0.85992 0.75214 0.81645 0.81710 1.16802 1.17597 1.16836 0.92287 0.92265 0.87586 0.83393 0.86824 0.90954 0.91046 0.90967 0.90640 0.91147 0.90517 0.90842 0.90637 0.90795 0.91308 0.83758 0.90464 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.84 101.05 0.99 0.96 16 2 O -0.30 -0.43 9.82 -19.47 -0.19 -0.62 16 3 C 0.20 0.42 6.65 -39.24 -0.26 0.16 16 4 C -0.29 -0.28 4.66 -39.30 -0.18 -0.47 16 5 C 0.18 0.42 5.17 -39.22 -0.20 0.22 16 6 O -0.28 -0.51 9.25 -19.49 -0.18 -0.69 16 7 C -0.25 0.35 5.31 101.05 0.54 0.89 16 8 Si 0.98 -2.75 11.69 -169.99 -1.99 -4.73 16 9 C -0.44 0.50 8.65 101.05 0.87 1.38 16 10 C -0.45 1.32 8.65 101.05 0.87 2.19 16 11 C -0.45 0.64 7.03 101.05 0.71 1.35 16 12 C -0.10 -0.33 6.33 -39.34 -0.25 -0.58 16 13 Cl -0.05 -0.18 28.50 -51.86 -1.48 -1.66 16 14 C -0.04 -0.10 8.43 -39.59 -0.33 -0.44 16 15 C -0.14 -0.34 5.31 -104.45 -0.55 -0.89 16 16 C -0.06 -0.05 2.36 36.00 0.09 0.03 16 17 O -0.54 -0.69 12.86 -35.23 -0.45 -1.15 16 18 Si 0.93 0.13 25.49 -169.99 -4.33 -4.20 16 19 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 20 H -0.25 0.00 7.11 56.52 0.40 0.40 16 21 H -0.24 -0.27 6.73 56.52 0.38 0.11 16 22 H 0.06 -0.21 5.63 -51.93 -0.29 -0.50 16 23 H 0.06 -0.15 7.96 -51.93 -0.41 -0.57 16 24 H 0.11 -0.38 8.14 -51.93 -0.42 -0.81 16 25 H 0.15 -0.23 3.05 -52.48 -0.16 -0.39 16 26 H 0.11 -0.30 7.96 -51.93 -0.41 -0.71 16 27 H 0.07 -0.18 6.07 -51.93 -0.32 -0.50 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 30 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 31 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 32 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 33 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 34 H 0.07 0.01 6.16 -51.93 -0.32 -0.31 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.14 4.94 -51.93 -0.26 -0.40 16 37 H 0.15 0.21 4.88 -52.49 -0.26 -0.05 16 38 H 0.08 -0.02 7.82 -51.93 -0.41 -0.43 16 39 H 0.38 -1.20 8.74 45.56 0.40 -0.80 16 LS Contribution 324.04 15.07 4.88 4.88 Total: 0.00 -5.95 324.04 -6.02 -11.97 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: -4.57 Total: -8.59 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 2.29 Total: 4.79 kcal Atomic # 8 Polarization: -1.63 SS G_CDS: -0.82 Total: -2.46 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: -6.32 Total: -8.94 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.48 Total: -1.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -5.95 -6.02 -11.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096628_3095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.504 kcal (2) G-P(sol) polarization free energy of solvation -5.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds