Wall clock time and date at job start Tue Mar 9 2021 16:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35923 * 116.99683 * 2 1 4 4 C 1.38619 * 120.02011 * 0.02562 * 3 2 1 5 5 C 1.38625 * 119.90518 * 179.97438 * 4 3 2 6 6 O 1.35925 * 120.03046 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00182 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47302 * 180.02562 * 7 6 5 9 9 C 1.38240 * 119.99917 * 269.72640 * 8 7 6 10 10 C 1.38229 * 119.99718 * 179.76568 * 9 8 7 11 11 C 1.38235 * 120.00421 * 0.50690 * 10 9 8 12 12 Si 1.86794 * 120.00162 * 179.72482 * 11 10 9 13 13 C 1.86306 * 109.47362 * 270.02200 * 12 11 10 14 14 C 1.86300 * 109.47494 * 30.02302 * 12 11 10 15 15 C 1.86305 * 109.47064 * 150.02366 * 12 11 10 16 16 C 1.38236 * 119.99486 * 359.74834 * 11 10 9 17 17 C 1.38225 * 120.00292 * 359.97438 * 16 11 10 18 18 C 1.38833 * 119.93879 * 359.97438 * 5 4 3 19 19 Cl 1.73598 * 119.98596 * 180.02562 * 18 5 4 20 20 C 1.38275 * 120.03397 * 0.02562 * 18 5 4 21 21 C 1.38175 * 120.09499 * 359.97438 * 20 18 5 22 22 C 1.50701 * 119.96912 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.46834 * 255.00129 * 22 21 20 24 24 Si 1.86291 * 109.47224 * 15.00032 * 22 21 20 25 25 H 1.48501 * 109.47119 * 60.00049 * 24 22 21 26 26 H 1.48501 * 109.47422 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47258 * 300.00046 * 24 22 21 28 28 H 1.09006 * 109.47256 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 300.00071 * 1 2 3 30 30 H 1.09001 * 109.47101 * 59.99812 * 1 2 3 31 31 H 1.08005 * 120.04274 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47250 * 300.00320 * 7 6 5 33 33 H 1.09002 * 109.47104 * 60.00320 * 7 6 5 34 34 H 1.08003 * 120.00092 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.99931 * 180.23337 * 10 9 8 36 36 H 1.08997 * 109.46544 * 60.00216 * 13 12 11 37 37 H 1.08999 * 109.47367 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.46879 * 300.00490 * 13 12 11 39 39 H 1.09004 * 109.47154 * 59.99826 * 14 12 11 40 40 H 1.08999 * 109.47309 * 179.97438 * 14 12 11 41 41 H 1.09003 * 109.46945 * 300.00073 * 14 12 11 42 42 H 1.09003 * 109.47211 * 60.00103 * 15 12 11 43 43 H 1.08999 * 109.47244 * 179.97438 * 15 12 11 44 44 H 1.08995 * 109.46820 * 299.99991 * 15 12 11 45 45 H 1.08001 * 119.99503 * 179.97438 * 16 11 10 46 46 H 1.08003 * 120.00183 * 179.97438 * 17 16 11 47 47 H 1.08000 * 119.95130 * 179.72298 * 20 18 5 48 48 H 1.09007 * 109.46968 * 135.00135 * 22 21 20 49 49 H 0.96694 * 114.00370 * 60.00109 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9231 3.6078 0.0011 6 8 1.1856 4.7496 0.0011 7 6 -0.2359 4.6038 0.0011 8 6 -0.8806 5.9659 0.0004 9 6 -1.1815 6.5888 1.1973 10 6 -1.7684 7.8402 1.1967 11 6 -2.0641 8.4645 -0.0007 12 14 -2.8643 10.1524 -0.0014 13 6 -4.7175 9.9612 -0.0013 14 6 -2.3368 11.0905 1.5193 15 6 -2.3367 11.0891 -1.5230 16 6 -1.7680 7.8394 -1.1975 17 6 -1.1758 6.5904 -1.1970 18 6 3.3097 3.6763 0.0016 19 17 4.1021 5.2209 0.0030 20 6 4.0600 2.5148 0.0011 21 6 3.4318 1.2841 0.0005 22 6 4.2523 0.0201 -0.0006 23 8 4.2185 -0.5684 -1.3024 24 14 6.0136 0.4225 0.4535 25 1 6.0486 1.0341 1.8062 26 1 6.8220 -0.8231 0.4529 27 1 6.5741 1.3774 -0.5361 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2127 2.3185 0.0005 32 1 -0.5449 4.0555 -0.8889 33 1 -0.5449 4.0556 0.8911 34 1 -0.9542 6.0993 2.1329 35 1 -2.0001 8.3285 2.1318 36 1 -5.0261 9.4132 0.8889 37 1 -5.1844 10.9461 -0.0022 38 1 -5.0261 9.4123 -0.8911 39 1 -1.2525 11.2024 1.5193 40 1 -2.8034 12.0756 1.5186 41 1 -2.6455 10.5424 2.4096 42 1 -2.6454 10.5403 -2.4127 43 1 -2.8040 12.0739 -1.5236 44 1 -1.2525 11.2010 -1.5230 45 1 -1.9993 8.3269 -2.1330 46 1 -0.9448 6.1018 -2.1321 47 1 5.1386 2.5696 -0.0030 48 1 3.8408 -0.6808 0.7258 49 1 4.5703 0.0006 -2.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096628_9276060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:35:58 Heat of formation + Delta-G solvation = -96.457663 kcal Electronic energy + Delta-G solvation = -29561.898734 eV Core-core repulsion = 25411.346128 eV Total energy + Delta-G solvation = -4150.552606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 380.117 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95090 -40.52128 -39.59948 -38.56341 -37.66930 -36.80166 -33.27769 -31.96850 -31.89876 -31.21101 -29.46085 -28.51988 -28.30884 -28.27813 -27.56068 -26.07357 -23.77617 -23.50710 -22.78278 -21.97211 -20.12527 -18.61092 -18.23263 -17.64669 -17.34566 -17.27317 -16.85662 -16.58795 -16.10349 -15.97298 -15.66003 -15.57499 -15.54603 -15.20458 -14.61328 -14.36440 -14.25231 -14.09888 -14.06580 -13.99203 -13.73241 -13.62733 -13.47683 -13.15258 -13.13028 -13.11406 -12.97928 -12.88683 -12.64653 -12.52487 -12.46253 -12.32812 -12.17990 -11.90197 -11.88261 -11.68160 -11.45112 -10.93755 -10.79215 -10.77162 -10.38765 -9.94896 -9.82078 -9.71166 -9.09535 -0.08725 0.02455 0.12354 0.50723 1.09508 1.15745 1.41841 1.51883 1.82014 1.89476 1.90652 2.00932 2.16240 2.21470 2.27878 2.65516 2.98031 3.41180 3.49531 3.63803 3.73089 3.76358 3.80287 4.00723 4.09328 4.16449 4.20237 4.25045 4.26997 4.31935 4.46705 4.51550 4.66951 4.69431 4.70826 4.81451 4.83617 4.83804 4.87493 4.88115 4.88331 4.89832 4.97364 4.98354 5.14207 5.23541 5.37953 5.54626 5.57862 5.58181 5.67086 5.69356 5.95277 6.10502 6.24241 6.74145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.311 6.311 3 C 0.196 3.804 4 C -0.287 4.287 5 C 0.180 3.820 6 O -0.307 6.307 7 C 0.096 3.904 8 C -0.103 4.103 9 C -0.120 4.120 10 C -0.104 4.104 11 C -0.372 4.372 12 Si 1.127 2.873 13 C -0.461 4.461 14 C -0.464 4.464 15 C -0.464 4.464 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.119 4.119 19 Cl -0.064 7.064 20 C -0.043 4.043 21 C -0.186 4.186 22 C -0.060 4.060 23 O -0.549 6.549 24 Si 0.968 3.032 25 H -0.255 1.255 26 H -0.267 1.267 27 H -0.243 1.243 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.155 0.845 48 H 0.117 0.883 49 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 0.572 0.080 4.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.223 6.223 3 C 0.149 3.851 4 C -0.306 4.306 5 C 0.133 3.867 6 O -0.220 6.220 7 C 0.022 3.978 8 C -0.103 4.103 9 C -0.138 4.138 10 C -0.122 4.122 11 C -0.411 4.411 12 Si 1.314 2.686 13 C -0.567 4.567 14 C -0.570 4.570 15 C -0.570 4.570 16 C -0.122 4.122 17 C -0.138 4.138 18 C -0.147 4.147 19 Cl -0.035 7.035 20 C -0.061 4.061 21 C -0.187 4.187 22 C -0.170 4.170 23 O -0.355 6.355 24 Si 0.792 3.208 25 H -0.179 1.179 26 H -0.192 1.192 27 H -0.166 1.166 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.172 0.828 48 H 0.135 0.865 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.889 0.337 0.630 3.954 hybrid contribution -0.375 0.311 -0.362 0.607 sum -4.264 0.648 0.268 4.321 Atomic orbital electron populations 1.23453 0.76268 1.06001 1.02492 1.86196 1.23406 1.25679 1.87028 1.18662 0.91383 0.84382 0.90713 1.21418 1.02026 0.90333 1.16837 1.18478 0.89375 0.85848 0.93017 1.86268 1.19995 1.28311 1.87401 1.21874 0.76766 0.95491 1.03651 1.19561 1.00611 0.95841 0.94321 1.21381 0.98763 0.96148 0.97548 1.21390 0.97149 0.94414 0.99247 1.28046 1.03685 1.15550 0.93843 0.77172 0.64874 0.60594 0.65967 1.26257 1.21103 1.04860 1.04490 1.26296 1.05796 1.09084 1.15872 1.26295 1.05792 1.09078 1.15883 1.21387 0.97118 0.94436 0.99254 1.21378 0.98754 0.96165 0.97549 1.20063 0.89822 0.88039 1.16740 1.98369 1.79683 1.28068 1.97391 1.20791 1.00587 0.89072 0.95696 1.19585 0.91850 0.95600 1.11712 1.24767 1.08902 0.94053 0.89328 1.86518 1.87136 1.45233 1.16653 0.85459 0.74511 0.79820 0.81053 1.17878 1.19173 1.16634 0.86295 0.91216 0.91449 0.81667 0.89491 0.89445 0.85407 0.84328 0.91298 0.90649 0.91302 0.91519 0.90627 0.90866 0.90870 0.90629 0.91515 0.84331 0.85429 0.82803 0.86478 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.31 -0.77 9.82 -92.68 -0.91 -1.68 16 3 C 0.20 0.61 6.66 22.49 0.15 0.76 16 4 C -0.29 -0.37 8.02 22.45 0.18 -0.19 16 5 C 0.18 0.86 6.68 22.50 0.15 1.01 16 6 O -0.31 -1.65 9.57 -92.70 -0.89 -2.53 16 7 C 0.10 -0.02 4.87 71.23 0.35 0.33 16 8 C -0.10 -0.24 5.51 -19.87 -0.11 -0.35 16 9 C -0.12 -0.24 9.70 22.27 0.22 -0.03 16 10 C -0.10 -0.05 9.29 22.27 0.21 0.16 16 11 C -0.37 0.25 4.59 22.27 0.10 0.35 16 12 Si 1.13 -6.45 12.32 68.60 0.85 -5.60 16 13 C -0.46 1.90 8.65 113.37 0.98 2.88 16 14 C -0.46 1.84 8.53 113.37 0.97 2.81 16 15 C -0.46 1.84 8.53 113.37 0.97 2.81 16 16 C -0.10 -0.05 9.29 22.27 0.21 0.16 16 17 C -0.12 -0.25 9.70 22.27 0.22 -0.03 16 18 C -0.12 -0.72 6.33 22.42 0.14 -0.57 16 19 Cl -0.06 -0.48 28.50 -2.72 -0.08 -0.55 16 20 C -0.04 -0.15 8.43 22.26 0.19 0.04 16 21 C -0.19 -0.56 5.27 -19.75 -0.10 -0.67 16 22 C -0.06 -0.09 2.37 71.24 0.17 0.08 16 23 O -0.55 -1.42 12.88 -148.98 -1.92 -3.34 16 24 Si 0.97 0.14 25.49 68.60 1.75 1.89 16 25 H -0.25 -0.39 7.11 99.48 0.71 0.32 16 26 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 27 H -0.24 0.25 6.73 99.48 0.67 0.91 16 28 H 0.12 -0.92 8.14 -2.38 -0.02 -0.94 16 29 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 30 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 31 H 0.17 -0.65 4.53 -2.91 -0.01 -0.66 16 32 H 0.09 -0.30 7.60 -2.38 -0.02 -0.32 16 33 H 0.09 -0.31 7.60 -2.39 -0.02 -0.33 16 34 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 35 H 0.14 -0.50 7.43 -2.91 -0.02 -0.52 16 36 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 37 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 39 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 41 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 42 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 43 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 44 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 45 H 0.14 -0.50 7.43 -2.91 -0.02 -0.52 16 46 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 47 H 0.15 0.10 4.88 -2.91 -0.01 0.09 16 48 H 0.12 0.16 7.82 -2.38 -0.02 0.14 16 49 H 0.39 -1.61 8.70 -74.06 -0.64 -2.25 16 Total: 0.00 -15.23 418.47 5.93 -9.31 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: 1.04 Total: -8.09 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 6.09 Total: 10.60 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -3.72 Total: -7.56 kcal Atomic # 14 Polarization: -6.30 SS G_CDS: 2.59 Total: -3.71 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.55 kcal Total: -15.23 5.93 -9.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096628_9276060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.151 kcal (2) G-P(sol) polarization free energy of solvation -15.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds