Wall clock time and date at job start Tue Mar 9 2021 16:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 C 1.53003 * 109.47076 * 239.99902 * 2 1 3 5 5 Si 1.86305 * 109.47253 * 119.99945 * 2 1 3 6 6 C 1.86295 * 109.47083 * 300.00129 * 5 2 1 7 7 C 1.86298 * 109.47056 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.46991 * 60.00321 * 5 2 1 9 9 C 1.42900 * 113.99721 * 180.02562 * 8 5 2 10 10 C 1.53005 * 109.46820 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47319 * 64.99376 * 10 9 8 12 12 C 1.35919 * 116.99662 * 179.97438 * 11 10 9 13 13 C 1.38684 * 120.04278 * 0.02562 * 12 11 10 14 14 C 1.38243 * 119.95143 * 179.97438 * 13 12 11 15 15 Br 1.89107 * 119.99080 * 180.02562 * 14 13 12 16 16 C 1.38431 * 120.02510 * 359.97438 * 14 13 12 17 17 Cl 1.73607 * 119.96555 * 180.02562 * 16 14 13 18 18 C 1.38365 * 120.07464 * 0.04352 * 16 14 13 19 19 C 1.38136 * 120.05209 * 359.97438 * 18 16 14 20 20 C 1.50697 * 120.01331 * 179.97438 * 19 18 16 21 21 O 1.42900 * 109.47511 * 105.00042 * 20 19 18 22 22 Si 1.86304 * 109.46969 * 344.99885 * 20 19 18 23 23 H 1.48500 * 109.46868 * 60.00275 * 22 20 19 24 24 H 1.48507 * 109.47003 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47404 * 300.00014 * 22 20 19 26 26 H 1.08993 * 109.47010 * 299.99372 * 1 2 3 27 27 H 1.08998 * 109.47236 * 60.00412 * 1 2 3 28 28 H 1.09004 * 109.46540 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47292 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47466 * 299.99795 * 3 2 1 31 31 H 1.08996 * 109.47466 * 59.99944 * 3 2 1 32 32 H 1.08996 * 109.47321 * 299.99594 * 4 2 1 33 33 H 1.09002 * 109.47060 * 60.00440 * 4 2 1 34 34 H 1.09004 * 109.46765 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46909 * 179.97438 * 6 5 2 36 36 H 1.08996 * 109.47177 * 300.00256 * 6 5 2 37 37 H 1.09004 * 109.46871 * 59.99928 * 6 5 2 38 38 H 1.09001 * 109.47442 * 300.00074 * 7 5 2 39 39 H 1.09003 * 109.47031 * 60.00637 * 7 5 2 40 40 H 1.08998 * 109.47038 * 179.97438 * 7 5 2 41 41 H 1.08997 * 109.47202 * 59.99838 * 9 8 5 42 42 H 1.09003 * 109.46888 * 299.99653 * 9 8 5 43 43 H 1.09006 * 109.46849 * 304.99733 * 10 9 8 44 44 H 1.09001 * 109.47050 * 185.00115 * 10 9 8 45 45 H 1.08005 * 120.02098 * 0.02562 * 13 12 11 46 46 H 1.08002 * 119.97449 * 179.70166 * 18 16 14 47 47 H 1.09004 * 109.47290 * 225.00080 * 20 19 18 48 48 H 0.96699 * 113.99578 * 59.99414 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8782 1.5212 6 6 1.5301 0.0000 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6075 -2.4160 1.5211 9 6 2.0287 -3.1814 2.6520 10 6 1.4639 -4.5995 2.5470 11 8 2.0332 -5.2561 1.4126 12 6 1.6347 -6.5337 1.1749 13 6 0.7146 -7.1418 2.0157 14 6 0.3102 -8.4411 1.7719 15 35 -0.9449 -9.2711 2.9173 16 6 0.8228 -9.1344 0.6889 17 17 0.3133 -10.7657 0.3838 18 6 1.7411 -8.5288 -0.1505 19 6 2.1477 -7.2308 0.0905 20 6 3.1483 -6.5723 -0.8239 21 8 2.4780 -5.6313 -1.6649 22 14 3.9740 -7.8684 -1.8771 23 1 2.9495 -8.5725 -2.6895 24 1 4.9596 -7.2194 -2.7787 25 1 4.6707 -8.8463 -1.0032 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7209 -1.2494 35 1 1.8930 -0.5141 3.9322 36 1 1.8933 1.0276 3.0422 37 1 0.4400 -0.0001 3.0422 38 1 4.3770 -1.3930 0.6307 39 1 4.3777 0.1487 1.5206 40 1 4.3774 -1.3923 2.4109 41 1 1.6638 -2.7112 3.5652 42 1 3.1176 -3.2251 2.6758 43 1 0.3809 -4.5517 2.4334 44 1 1.7103 -5.1565 3.4509 45 1 0.3138 -6.6004 2.8600 46 1 2.1436 -9.0729 -0.9921 47 1 3.9003 -6.0555 -0.2277 48 1 2.0246 -4.9262 -1.1828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:41:32 Heat of formation + Delta-G solvation = -144.147248 kcal Electronic energy + Delta-G solvation = -29162.676148 eV Core-core repulsion = 25027.604506 eV Total energy + Delta-G solvation = -4135.071642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 424.043 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70875 -39.28508 -37.99212 -37.59682 -37.12965 -36.78539 -33.89301 -31.66160 -31.22714 -30.18066 -29.27074 -29.01696 -27.81068 -27.33548 -26.51720 -25.01664 -23.01515 -22.59778 -20.37677 -19.46395 -18.44991 -18.06911 -17.97099 -17.27791 -16.70594 -16.33507 -15.96337 -15.87555 -15.58888 -15.40945 -15.30009 -14.85830 -14.80193 -14.67827 -14.43948 -14.24758 -13.89217 -13.68880 -13.49486 -13.34272 -13.15569 -13.12743 -12.91699 -12.90150 -12.86763 -12.59619 -12.38250 -12.36162 -12.33683 -12.22729 -11.91169 -11.79625 -11.66016 -11.53745 -11.45704 -11.36652 -11.28479 -11.18488 -11.04827 -10.27883 -10.13560 -10.01778 -9.34194 -0.38704 -0.12879 0.27123 0.96386 1.15309 1.47386 1.49827 1.55579 1.82752 1.93689 1.97789 2.12315 2.17949 2.50923 3.34501 3.41625 3.70665 3.90457 3.91156 4.02864 4.12696 4.16123 4.16645 4.22627 4.27415 4.34302 4.44114 4.49975 4.57486 4.63526 4.68021 4.78169 4.81645 4.82631 4.83331 4.85349 4.86661 4.87658 5.03795 5.12934 5.13372 5.15080 5.24021 5.38162 5.45194 5.45734 5.53000 5.63774 5.69115 6.13464 6.65118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.386 4.386 3 C -0.142 4.142 4 C -0.136 4.136 5 Si 1.330 2.670 6 C -0.520 4.520 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.074 3.926 10 C 0.041 3.959 11 O -0.299 6.299 12 C 0.162 3.838 13 C -0.167 4.167 14 C -0.053 4.053 15 Br -0.021 7.021 16 C -0.059 4.059 17 Cl -0.050 7.050 18 C -0.077 4.077 19 C -0.126 4.126 20 C -0.081 4.081 21 O -0.547 6.547 22 Si 1.015 2.985 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.236 1.236 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.171 0.829 46 H 0.153 0.847 47 H 0.097 0.903 48 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 3.419 4.693 6.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.193 4.193 5 Si 1.458 2.542 6 C -0.622 4.622 7 C -0.622 4.622 8 O -0.592 6.592 9 C -0.001 4.001 10 C -0.033 4.033 11 O -0.212 6.212 12 C 0.114 3.886 13 C -0.187 4.187 14 C -0.134 4.134 15 Br 0.065 6.935 16 C -0.089 4.089 17 Cl -0.021 7.021 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.189 4.189 21 O -0.354 6.354 22 Si 0.835 3.165 23 H -0.185 1.185 24 H -0.190 1.190 25 H -0.158 1.158 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.120 0.880 45 H 0.189 0.811 46 H 0.170 0.830 47 H 0.115 0.885 48 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.942 1.916 3.893 4.754 hybrid contribution -0.397 1.208 0.513 1.372 sum 1.545 3.125 4.406 5.618 Atomic orbital electron populations 1.21535 0.94342 1.01803 1.01656 1.26010 1.00316 1.02882 1.13598 1.21607 1.01199 0.95000 1.02067 1.21531 1.00877 1.00206 0.96706 0.75946 0.62001 0.52625 0.63608 1.27125 1.06972 1.09818 1.18273 1.27156 1.25760 1.04756 1.04556 1.85397 1.79364 1.46439 1.48046 1.22377 1.00184 0.89183 0.88355 1.23467 0.99785 0.92482 0.87569 1.86152 1.64563 1.21909 1.48559 1.18699 0.92319 0.84936 0.92641 1.21384 1.00578 0.93878 1.02905 1.21696 0.99383 0.96120 0.96152 1.96834 1.54492 1.80539 1.61590 1.20646 1.01656 0.88534 0.98016 1.98403 1.89912 1.18422 1.95367 1.20965 0.95654 0.94263 0.98766 1.19812 1.02139 0.93879 0.96983 1.25213 0.96161 0.99504 0.98021 1.86672 1.72107 1.41147 1.35475 0.84481 0.78226 0.75503 0.78278 1.18462 1.18954 1.15827 0.92067 0.93784 0.92336 0.91950 0.93462 0.91802 0.92117 0.93848 0.92309 0.90552 0.90698 0.91040 0.91360 0.90788 0.90856 0.87786 0.90440 0.89809 0.87996 0.81135 0.83005 0.88469 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 7.85 71.98 0.56 0.69 16 2 C -0.39 0.79 0.53 -10.79 -0.01 0.79 16 3 C -0.14 0.30 7.85 71.98 0.56 0.86 16 4 C -0.14 0.05 7.85 71.98 0.56 0.62 16 5 Si 1.33 -7.47 8.45 68.60 0.58 -6.89 16 6 C -0.52 2.86 8.50 113.37 0.96 3.82 16 7 C -0.52 2.20 8.50 113.37 0.96 3.17 16 8 O -0.63 2.84 8.52 -144.34 -1.23 1.61 16 9 C 0.07 -0.63 5.51 71.98 0.40 -0.23 16 10 C 0.04 -0.33 5.12 71.98 0.37 0.04 16 11 O -0.30 0.85 9.00 -87.99 -0.79 0.06 16 12 C 0.16 -0.09 6.62 22.50 0.15 0.06 16 13 C -0.17 0.20 8.78 22.38 0.20 0.40 16 14 C -0.05 -0.12 6.22 22.32 0.14 0.01 16 15 Br -0.02 -0.05 32.52 -20.37 -0.66 -0.71 16 16 C -0.06 -0.24 6.32 22.35 0.14 -0.10 16 17 Cl -0.05 -0.24 27.73 -2.72 -0.08 -0.31 16 18 C -0.08 -0.22 8.44 22.28 0.19 -0.03 16 19 C -0.13 -0.18 5.28 -19.77 -0.10 -0.28 16 20 C -0.08 -0.04 2.33 71.24 0.17 0.13 16 21 O -0.55 -1.52 12.65 -148.98 -1.89 -3.41 16 22 Si 1.01 1.01 25.74 68.60 1.77 2.77 16 23 H -0.26 -0.73 6.73 99.48 0.67 -0.06 16 24 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 25 H -0.24 0.15 7.11 99.48 0.71 0.85 16 26 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 27 H 0.04 0.03 8.14 -2.39 -0.02 0.02 16 28 H 0.06 -0.04 7.97 -2.39 -0.02 -0.06 16 29 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 30 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 32 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 33 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 35 H 0.08 -0.56 7.48 -2.39 -0.02 -0.58 16 36 H 0.07 -0.38 7.79 -2.39 -0.02 -0.40 16 37 H 0.07 -0.34 7.79 -2.39 -0.02 -0.36 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 40 H 0.07 -0.41 7.48 -2.39 -0.02 -0.43 16 41 H 0.10 -1.39 7.21 -2.39 -0.02 -1.40 16 42 H 0.08 -0.78 7.21 -2.39 -0.02 -0.80 16 43 H 0.08 -0.71 7.66 -2.38 -0.02 -0.73 16 44 H 0.10 -1.26 7.66 -2.39 -0.02 -1.27 16 45 H 0.17 -1.06 6.30 -2.91 -0.02 -1.08 16 46 H 0.15 0.20 4.88 -2.91 -0.01 0.18 16 47 H 0.10 -0.25 7.83 -2.39 -0.02 -0.27 16 48 H 0.38 -0.32 8.60 -74.06 -0.64 -0.96 16 Total: 0.00 -9.76 416.26 4.00 -5.76 By element: Atomic # 1 Polarization: -9.89 SS G_CDS: 1.04 Total: -8.85 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.26 Total: 9.96 kcal Atomic # 8 Polarization: 2.18 SS G_CDS: -3.91 Total: -1.73 kcal Atomic # 14 Polarization: -6.46 SS G_CDS: 2.35 Total: -4.11 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.31 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -0.66 Total: -0.71 kcal Total: -9.76 4.00 -5.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.388 kcal (2) G-P(sol) polarization free energy of solvation -9.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds