Wall clock time and date at job start Tue Mar 9 2021 16:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 C 1.53006 * 109.47391 * 239.99814 * 2 1 3 5 5 Si 1.86303 * 109.47253 * 119.99847 * 2 1 3 6 6 C 1.86295 * 109.47248 * 300.00152 * 5 2 1 7 7 C 1.86303 * 109.47325 * 180.02562 * 5 2 1 8 8 O 1.63106 * 109.47011 * 60.00016 * 5 2 1 9 9 C 1.42897 * 114.00220 * 180.02562 * 8 5 2 10 10 O 1.42898 * 109.47559 * 179.97438 * 9 8 5 11 11 C 1.35919 * 116.99662 * 74.99586 * 10 9 8 12 12 C 1.38684 * 120.04278 * 0.02562 * 11 10 9 13 13 C 1.38243 * 119.95143 * 179.97438 * 12 11 10 14 14 Br 1.89107 * 119.99080 * 180.02562 * 13 12 11 15 15 C 1.38431 * 120.02510 * 359.97438 * 13 12 11 16 16 Cl 1.73607 * 119.96555 * 180.02562 * 15 13 12 17 17 C 1.38365 * 120.07464 * 0.04352 * 15 13 12 18 18 C 1.38136 * 120.05209 * 359.97438 * 17 15 13 19 19 C 1.50697 * 120.01331 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47511 * 105.00042 * 19 18 17 21 21 Si 1.86304 * 109.46969 * 344.99885 * 19 18 17 22 22 H 1.48500 * 109.46868 * 60.00275 * 21 19 18 23 23 H 1.48507 * 109.47003 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47404 * 300.00014 * 21 19 18 25 25 H 1.08997 * 109.47305 * 300.00208 * 1 2 3 26 26 H 1.08999 * 109.46783 * 59.99838 * 1 2 3 27 27 H 1.08993 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47693 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47121 * 300.00022 * 3 2 1 30 30 H 1.09005 * 109.47339 * 59.99580 * 3 2 1 31 31 H 1.08999 * 109.46726 * 300.00375 * 4 2 1 32 32 H 1.08996 * 109.46621 * 59.99953 * 4 2 1 33 33 H 1.09002 * 109.47164 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47684 * 179.97438 * 6 5 2 35 35 H 1.09001 * 109.47354 * 299.99792 * 6 5 2 36 36 H 1.09002 * 109.47327 * 59.99378 * 6 5 2 37 37 H 1.09007 * 109.46728 * 299.99994 * 7 5 2 38 38 H 1.08993 * 109.47149 * 60.00149 * 7 5 2 39 39 H 1.08999 * 109.46855 * 180.02562 * 7 5 2 40 40 H 1.09008 * 109.47261 * 59.99430 * 9 8 5 41 41 H 1.09002 * 109.47089 * 300.00156 * 9 8 5 42 42 H 1.08005 * 120.02098 * 0.02562 * 12 11 10 43 43 H 1.08002 * 119.97449 * 179.70166 * 17 15 13 44 44 H 1.09004 * 109.47290 * 225.00080 * 19 18 17 45 45 H 0.96699 * 113.99578 * 59.99414 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 8 1.5000 -4.5055 2.5546 11 6 2.0880 -5.3400 1.6572 12 6 3.1514 -4.8935 0.8872 13 6 3.7484 -5.7441 -0.0246 14 35 5.1990 -5.1366 -1.0747 15 6 3.2852 -7.0406 -0.1686 16 17 4.0364 -8.1076 -1.3136 17 6 2.2240 -7.4871 0.5989 18 6 1.6250 -6.6397 1.5107 19 6 0.4689 -7.1267 2.3457 20 8 0.9147 -7.3685 3.6817 21 14 -0.2002 -8.7063 1.6189 22 1 0.8691 -9.7366 1.6051 23 1 -1.3391 -9.1865 2.4421 24 1 -0.6635 -8.4551 0.2305 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2490 34 1 1.8930 -0.5140 3.9323 35 1 1.8933 1.0277 3.0423 36 1 0.4400 0.0001 3.0423 37 1 4.3777 -1.3912 0.6315 38 1 4.3770 0.1502 1.5218 39 1 4.3773 -1.3917 2.4114 40 1 1.6637 -2.7112 3.5653 41 1 3.1174 -3.2252 2.6759 42 1 3.5135 -3.8823 1.0004 43 1 1.8609 -8.4975 0.4819 44 1 -0.3160 -6.3704 2.3559 45 1 1.2765 -6.5877 4.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15163260_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:41:55 Heat of formation + Delta-G solvation = -152.366201 kcal Electronic energy + Delta-G solvation = -27628.306777 eV Core-core repulsion = 23648.416354 eV Total energy + Delta-G solvation = -3979.890423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.027 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86192 -39.51213 -37.97885 -37.27908 -36.98997 -36.94846 -33.83589 -31.44029 -30.93912 -29.70085 -29.27871 -27.99200 -27.53406 -27.42007 -26.49443 -23.79551 -22.79969 -20.60251 -19.62452 -18.66358 -18.48064 -18.37382 -17.26432 -16.87930 -16.13661 -16.08624 -15.88111 -15.58724 -15.24448 -15.04950 -14.91828 -14.84825 -14.52631 -14.42772 -14.25165 -13.91336 -13.72956 -13.64449 -13.55687 -13.45515 -13.12843 -13.05552 -13.04056 -12.52534 -12.43728 -12.27541 -12.25768 -12.18336 -12.01323 -11.84197 -11.74829 -11.70659 -11.66004 -11.36108 -11.18599 -11.08106 -10.67474 -10.25168 -10.10550 -9.41152 -0.36649 -0.13840 0.32363 0.97782 1.04587 1.15842 1.45321 1.50176 1.53387 1.78170 1.85016 1.95908 2.12528 2.23478 3.32766 3.36465 3.44305 3.69929 3.75044 3.84732 3.99326 3.99577 4.03290 4.18081 4.26595 4.33164 4.44685 4.46546 4.50621 4.52684 4.53865 4.63681 4.69719 4.74796 4.79925 4.83129 4.88913 4.99519 5.00018 5.09253 5.12321 5.22110 5.28170 5.35894 5.37873 5.43716 5.86558 6.52388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.371 4.371 3 C -0.138 4.138 4 C -0.135 4.135 5 Si 1.290 2.710 6 C -0.512 4.512 7 C -0.516 4.516 8 O -0.644 6.644 9 C 0.245 3.755 10 O -0.290 6.290 11 C 0.156 3.844 12 C -0.155 4.155 13 C -0.047 4.047 14 Br -0.017 7.017 15 C -0.042 4.042 16 Cl -0.040 7.040 17 C -0.072 4.072 18 C -0.116 4.116 19 C -0.084 4.084 20 O -0.533 6.533 21 Si 1.005 2.995 22 H -0.248 1.248 23 H -0.250 1.250 24 H -0.244 1.244 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.086 0.914 45 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 3.342 2.141 3.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.415 4.415 3 C -0.195 4.195 4 C -0.192 4.192 5 Si 1.423 2.577 6 C -0.615 4.615 7 C -0.618 4.618 8 O -0.604 6.604 9 C 0.132 3.868 10 O -0.204 6.204 11 C 0.109 3.891 12 C -0.176 4.176 13 C -0.128 4.128 14 Br 0.069 6.931 15 C -0.071 4.071 16 Cl -0.010 7.010 17 C -0.091 4.091 18 C -0.118 4.118 19 C -0.193 4.193 20 O -0.339 6.339 21 Si 0.823 3.177 22 H -0.172 1.172 23 H -0.173 1.173 24 H -0.167 1.167 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.084 0.916 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.104 0.896 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.647 1.903 1.142 2.312 hybrid contribution 0.648 1.667 0.419 1.837 sum 0.001 3.570 1.562 3.897 Atomic orbital electron populations 1.21520 0.93636 1.02092 1.01964 1.25742 1.00820 1.02648 1.12324 1.21565 1.00826 0.94749 1.02338 1.21526 1.00669 1.00238 0.96806 0.76621 0.63080 0.52233 0.65807 1.27026 1.07399 1.09876 1.17176 1.27074 1.24533 1.05521 1.04709 1.85333 1.79949 1.46687 1.48468 1.23539 0.96463 0.78093 0.88684 1.86257 1.58395 1.21748 1.53983 1.18624 0.91117 0.89438 0.89917 1.21175 0.97582 1.00940 0.97880 1.21580 0.97662 0.94099 0.99497 1.96841 1.39841 1.88490 1.67933 1.20568 0.98127 0.91017 0.97356 1.98414 1.80786 1.63919 1.57923 1.20868 0.93990 1.00223 0.94044 1.19735 1.00554 0.91484 1.00032 1.25263 0.95678 1.12914 0.85397 1.86723 1.83655 1.38941 1.24532 0.84601 0.80007 0.74154 0.78906 1.17160 1.17310 1.16685 0.92627 0.92605 0.92141 0.92436 0.92290 0.92443 0.92201 0.92567 0.92595 0.91368 0.90220 0.90479 0.90492 0.90006 0.91364 0.86618 0.91634 0.83183 0.83208 0.89597 0.78225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 7.85 37.16 0.29 0.41 16 2 C -0.37 0.53 0.53 -90.62 -0.05 0.48 16 3 C -0.14 0.24 7.85 37.16 0.29 0.53 16 4 C -0.14 0.09 7.85 37.16 0.29 0.39 16 5 Si 1.29 -3.63 8.45 -169.99 -1.44 -5.07 16 6 C -0.51 1.40 8.50 101.05 0.86 2.26 16 7 C -0.52 1.38 8.50 101.05 0.86 2.24 16 8 O -0.64 0.92 8.04 -59.04 -0.47 0.44 16 9 C 0.24 -0.64 5.42 101.05 0.55 -0.09 16 10 O -0.29 0.19 9.30 -43.30 -0.40 -0.21 16 11 C 0.16 0.09 6.56 -39.23 -0.26 -0.17 16 12 C -0.16 -0.09 8.52 -39.41 -0.34 -0.42 16 13 C -0.05 -0.08 6.22 -39.51 -0.25 -0.32 16 14 Br -0.02 -0.02 32.52 -68.01 -2.21 -2.24 16 15 C -0.04 -0.08 6.32 -39.46 -0.25 -0.33 16 16 Cl -0.04 -0.08 27.73 -51.86 -1.44 -1.52 16 17 C -0.07 -0.09 8.44 -39.57 -0.33 -0.42 16 18 C -0.12 -0.10 5.28 -104.47 -0.55 -0.65 16 19 C -0.08 -0.01 2.33 36.00 0.08 0.07 16 20 O -0.53 -0.32 12.65 -35.23 -0.45 -0.77 16 21 Si 1.00 0.15 25.74 -169.99 -4.38 -4.23 16 22 H -0.25 -0.15 6.73 56.52 0.38 0.24 16 23 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 24 H -0.24 0.04 7.11 56.52 0.40 0.44 16 25 H 0.05 -0.09 7.79 -51.93 -0.40 -0.49 16 26 H 0.05 -0.02 8.14 -51.93 -0.42 -0.45 16 27 H 0.06 -0.02 7.97 -51.93 -0.41 -0.44 16 28 H 0.06 -0.14 7.79 -51.93 -0.40 -0.54 16 29 H 0.06 -0.07 8.14 -51.92 -0.42 -0.49 16 30 H 0.06 -0.14 7.79 -51.93 -0.40 -0.54 16 31 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 32 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 33 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 34 H 0.07 -0.24 7.48 -51.93 -0.39 -0.63 16 35 H 0.08 -0.22 7.79 -51.93 -0.40 -0.63 16 36 H 0.08 -0.18 7.79 -51.93 -0.40 -0.58 16 37 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 38 H 0.08 -0.23 7.79 -51.93 -0.40 -0.63 16 39 H 0.07 -0.23 7.48 -51.93 -0.39 -0.62 16 40 H 0.12 -0.60 7.21 -51.92 -0.37 -0.98 16 41 H 0.07 -0.29 5.77 -51.93 -0.30 -0.59 16 42 H 0.15 -0.15 5.86 -52.48 -0.31 -0.46 16 43 H 0.15 0.02 4.88 -52.49 -0.26 -0.24 16 44 H 0.09 -0.08 7.83 -51.93 -0.41 -0.48 16 45 H 0.37 -0.74 8.60 45.56 0.39 -0.35 16 LS Contribution 393.35 15.07 5.93 5.93 Total: 0.00 -4.09 393.35 -9.83 -13.92 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: -6.18 Total: -10.23 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 1.20 Total: 3.97 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: -1.32 Total: -0.54 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: -5.81 Total: -9.30 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.44 Total: -1.52 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.21 Total: -2.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -4.09 -9.83 -13.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.443 kcal (2) G-P(sol) polarization free energy of solvation -4.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds