Wall clock time and date at job start Tue Mar 9 2021 16:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 C 1.53006 * 109.47391 * 239.99814 * 2 1 3 5 5 Si 1.86303 * 109.47253 * 119.99847 * 2 1 3 6 6 C 1.86295 * 109.47248 * 300.00152 * 5 2 1 7 7 C 1.86303 * 109.47325 * 180.02562 * 5 2 1 8 8 O 1.63106 * 109.47011 * 60.00016 * 5 2 1 9 9 C 1.42897 * 114.00220 * 180.02562 * 8 5 2 10 10 O 1.42898 * 109.47559 * 179.97438 * 9 8 5 11 11 C 1.35919 * 116.99662 * 74.99586 * 10 9 8 12 12 C 1.38684 * 120.04278 * 0.02562 * 11 10 9 13 13 C 1.38243 * 119.95143 * 179.97438 * 12 11 10 14 14 Br 1.89107 * 119.99080 * 180.02562 * 13 12 11 15 15 C 1.38431 * 120.02510 * 359.97438 * 13 12 11 16 16 Cl 1.73607 * 119.96555 * 180.02562 * 15 13 12 17 17 C 1.38365 * 120.07464 * 0.04352 * 15 13 12 18 18 C 1.38136 * 120.05209 * 359.97438 * 17 15 13 19 19 C 1.50697 * 120.01331 * 179.97438 * 18 17 15 20 20 O 1.42900 * 109.47511 * 105.00042 * 19 18 17 21 21 Si 1.86304 * 109.46969 * 344.99885 * 19 18 17 22 22 H 1.48500 * 109.46868 * 60.00275 * 21 19 18 23 23 H 1.48507 * 109.47003 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47404 * 300.00014 * 21 19 18 25 25 H 1.08997 * 109.47305 * 300.00208 * 1 2 3 26 26 H 1.08999 * 109.46783 * 59.99838 * 1 2 3 27 27 H 1.08993 * 109.47164 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47693 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47121 * 300.00022 * 3 2 1 30 30 H 1.09005 * 109.47339 * 59.99580 * 3 2 1 31 31 H 1.08999 * 109.46726 * 300.00375 * 4 2 1 32 32 H 1.08996 * 109.46621 * 59.99953 * 4 2 1 33 33 H 1.09002 * 109.47164 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47684 * 179.97438 * 6 5 2 35 35 H 1.09001 * 109.47354 * 299.99792 * 6 5 2 36 36 H 1.09002 * 109.47327 * 59.99378 * 6 5 2 37 37 H 1.09007 * 109.46728 * 299.99994 * 7 5 2 38 38 H 1.08993 * 109.47149 * 60.00149 * 7 5 2 39 39 H 1.08999 * 109.46855 * 180.02562 * 7 5 2 40 40 H 1.09008 * 109.47261 * 59.99430 * 9 8 5 41 41 H 1.09002 * 109.47089 * 300.00156 * 9 8 5 42 42 H 1.08005 * 120.02098 * 0.02562 * 12 11 10 43 43 H 1.08002 * 119.97449 * 179.70166 * 17 15 13 44 44 H 1.09004 * 109.47290 * 225.00080 * 19 18 17 45 45 H 0.96699 * 113.99578 * 59.99414 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8775 1.5216 8 8 1.6073 -2.4160 1.5212 9 6 2.0285 -3.1814 2.6520 10 8 1.5000 -4.5055 2.5546 11 6 2.0880 -5.3400 1.6572 12 6 3.1514 -4.8935 0.8872 13 6 3.7484 -5.7441 -0.0246 14 35 5.1990 -5.1366 -1.0747 15 6 3.2852 -7.0406 -0.1686 16 17 4.0364 -8.1076 -1.3136 17 6 2.2240 -7.4871 0.5989 18 6 1.6250 -6.6397 1.5107 19 6 0.4689 -7.1267 2.3457 20 8 0.9147 -7.3685 3.6817 21 14 -0.2002 -8.7063 1.6189 22 1 0.8691 -9.7366 1.6051 23 1 -1.3391 -9.1865 2.4421 24 1 -0.6635 -8.4551 0.2305 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2490 34 1 1.8930 -0.5140 3.9323 35 1 1.8933 1.0277 3.0423 36 1 0.4400 0.0001 3.0423 37 1 4.3777 -1.3912 0.6315 38 1 4.3770 0.1502 1.5218 39 1 4.3773 -1.3917 2.4114 40 1 1.6637 -2.7112 3.5653 41 1 3.1174 -3.2252 2.6759 42 1 3.5135 -3.8823 1.0004 43 1 1.8609 -8.4975 0.4819 44 1 -0.3160 -6.3704 2.3559 45 1 1.2765 -6.5877 4.1229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:41:55 Heat of formation + Delta-G solvation = -142.455639 kcal Electronic energy + Delta-G solvation = -27627.877023 eV Core-core repulsion = 23648.416354 eV Total energy + Delta-G solvation = -3979.460669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.027 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82154 -39.44164 -38.01017 -37.27985 -36.90026 -36.83199 -33.87696 -31.46241 -30.97668 -29.45905 -29.08612 -27.85525 -27.40209 -27.24953 -26.50185 -23.76469 -22.81357 -20.48523 -19.56227 -18.52632 -18.43496 -18.30792 -17.28394 -16.79434 -16.04615 -16.03553 -15.83112 -15.57594 -15.23727 -14.93565 -14.80153 -14.76515 -14.49854 -14.40358 -14.12052 -13.80711 -13.57379 -13.50863 -13.38798 -13.19663 -13.06731 -12.97288 -12.93409 -12.52240 -12.41264 -12.37746 -12.26934 -11.97290 -11.90426 -11.84562 -11.71660 -11.60520 -11.56869 -11.38864 -11.23292 -11.07068 -10.43312 -10.15649 -10.09701 -9.44191 -0.41390 -0.17471 0.24610 0.93163 1.15352 1.25653 1.49134 1.50642 1.65876 1.93387 2.00118 2.05540 2.09852 2.42668 3.32198 3.38805 3.62448 3.81107 3.91445 3.98787 4.06067 4.10182 4.10600 4.19625 4.28801 4.43355 4.51545 4.60000 4.72091 4.73257 4.77480 4.78415 4.80734 4.81745 4.81918 4.98814 5.01501 5.08051 5.08353 5.12420 5.24961 5.36000 5.39565 5.44641 5.59669 5.65225 5.94504 6.66644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.324 2.676 6 C -0.518 4.518 7 C -0.524 4.524 8 O -0.661 6.661 9 C 0.226 3.774 10 O -0.292 6.292 11 C 0.158 3.842 12 C -0.157 4.157 13 C -0.056 4.056 14 Br -0.020 7.020 15 C -0.055 4.055 16 Cl -0.047 7.047 17 C -0.079 4.079 18 C -0.122 4.122 19 C -0.081 4.081 20 O -0.545 6.545 21 Si 1.016 2.984 22 H -0.257 1.257 23 H -0.263 1.263 24 H -0.240 1.240 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.156 0.844 44 H 0.098 0.902 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 4.071 3.363 5.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.456 2.544 6 C -0.621 4.621 7 C -0.626 4.626 8 O -0.621 6.621 9 C 0.115 3.885 10 O -0.206 6.206 11 C 0.111 3.889 12 C -0.177 4.177 13 C -0.137 4.137 14 Br 0.066 6.934 15 C -0.084 4.084 16 Cl -0.018 7.018 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.190 4.190 20 O -0.352 6.352 21 Si 0.836 3.164 22 H -0.181 1.181 23 H -0.188 1.188 24 H -0.163 1.163 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.102 0.898 42 H 0.182 0.818 43 H 0.173 0.827 44 H 0.116 0.884 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.439 2.650 2.346 3.566 hybrid contribution 0.555 1.481 0.057 1.583 sum 0.116 4.131 2.402 4.780 Atomic orbital electron populations 1.21542 0.94333 1.01651 1.01912 1.25980 1.00353 1.03128 1.13180 1.21610 1.01371 0.94590 1.02295 1.21542 1.01077 0.99802 0.97004 0.75991 0.62592 0.51381 0.64469 1.27066 1.07182 1.10162 1.17667 1.27137 1.24584 1.05821 1.05038 1.85322 1.80349 1.47288 1.49156 1.24083 0.97854 0.77224 0.89352 1.86271 1.58384 1.22528 1.53372 1.18681 0.90834 0.89525 0.89850 1.21349 0.97458 1.01422 0.97466 1.21679 0.97864 0.94222 0.99914 1.96826 1.40000 1.88425 1.68131 1.20663 0.98691 0.91229 0.97771 1.98405 1.80963 1.64191 1.58266 1.20993 0.93961 1.00676 0.94171 1.19845 1.00744 0.91754 1.00015 1.25222 0.95668 1.12921 0.85169 1.86692 1.83810 1.39989 1.24709 0.84445 0.79058 0.74038 0.78815 1.18102 1.18771 1.16313 0.91798 0.93583 0.92734 0.91654 0.93341 0.91542 0.92901 0.93557 0.91953 0.90110 0.90059 0.90886 0.91006 0.89783 0.90232 0.83822 0.89833 0.81778 0.82700 0.88450 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.16 7.85 71.98 0.56 0.72 16 2 C -0.38 1.05 0.53 -10.79 -0.01 1.04 16 3 C -0.14 0.48 7.85 71.98 0.56 1.05 16 4 C -0.14 0.09 7.85 71.98 0.56 0.66 16 5 Si 1.32 -8.81 8.45 68.60 0.58 -8.23 16 6 C -0.52 3.66 8.50 113.37 0.96 4.63 16 7 C -0.52 3.50 8.50 113.37 0.96 4.46 16 8 O -0.66 2.59 8.04 -126.21 -1.01 1.58 16 9 C 0.23 -1.58 5.42 113.37 0.61 -0.97 16 10 O -0.29 0.76 9.30 -69.87 -0.65 0.11 16 11 C 0.16 0.07 6.56 22.50 0.15 0.22 16 12 C -0.16 -0.10 8.52 22.38 0.19 0.09 16 13 C -0.06 -0.19 6.22 22.32 0.14 -0.05 16 14 Br -0.02 -0.06 32.52 -20.37 -0.66 -0.72 16 15 C -0.05 -0.24 6.32 22.35 0.14 -0.10 16 16 Cl -0.05 -0.23 27.73 -2.72 -0.08 -0.30 16 17 C -0.08 -0.23 8.44 22.28 0.19 -0.04 16 18 C -0.12 -0.19 5.28 -19.77 -0.10 -0.29 16 19 C -0.08 0.00 2.33 71.24 0.17 0.17 16 20 O -0.54 -0.41 12.65 -148.98 -1.89 -2.30 16 21 Si 1.02 0.67 25.74 68.60 1.77 2.43 16 22 H -0.26 -0.50 6.73 99.48 0.67 0.17 16 23 H -0.26 -0.73 7.11 99.48 0.71 -0.03 16 24 H -0.24 0.03 7.11 99.48 0.71 0.74 16 25 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 26 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.05 -0.01 7.97 -2.39 -0.02 -0.02 16 28 H 0.06 -0.33 7.79 -2.39 -0.02 -0.35 16 29 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H 0.07 -0.35 7.79 -2.38 -0.02 -0.37 16 31 H 0.05 0.03 7.97 -2.39 -0.02 0.01 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 34 H 0.08 -0.76 7.48 -2.39 -0.02 -0.78 16 35 H 0.08 -0.57 7.79 -2.39 -0.02 -0.59 16 36 H 0.07 -0.43 7.79 -2.39 -0.02 -0.44 16 37 H 0.07 -0.38 7.79 -2.38 -0.02 -0.40 16 38 H 0.08 -0.58 7.79 -2.39 -0.02 -0.60 16 39 H 0.08 -0.70 7.48 -2.39 -0.02 -0.72 16 40 H 0.14 -1.87 7.21 -2.38 -0.02 -1.88 16 41 H 0.08 -0.91 5.77 -2.39 -0.01 -0.92 16 42 H 0.16 -0.49 5.86 -2.91 -0.02 -0.51 16 43 H 0.16 0.15 4.88 -2.91 -0.01 0.13 16 44 H 0.10 -0.24 7.83 -2.39 -0.02 -0.26 16 45 H 0.38 -1.82 8.60 -74.06 -0.64 -2.46 16 Total: 0.00 -9.81 393.35 4.24 -5.57 By element: Atomic # 1 Polarization: -10.81 SS G_CDS: 1.09 Total: -9.72 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.10 Total: 11.58 kcal Atomic # 8 Polarization: 2.94 SS G_CDS: -3.55 Total: -0.61 kcal Atomic # 14 Polarization: -8.14 SS G_CDS: 2.35 Total: -5.79 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.30 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.66 Total: -0.72 kcal Total: -9.81 4.24 -5.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.885 kcal (2) G-P(sol) polarization free energy of solvation -9.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds