Wall clock time and date at job start Tue Mar 9 2021 16:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47197 * 2 1 4 4 C 1.52996 * 109.46941 * 239.99619 * 2 1 3 5 5 O 1.45200 * 109.46958 * 119.99890 * 2 1 3 6 6 C 1.34638 * 116.99938 * 59.99470 * 5 2 1 7 7 O 1.21514 * 120.00036 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00091 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.90889 * 336.25053 * 9 8 6 11 11 C 1.53784 * 113.61524 * 107.50411 * 9 8 6 12 12 C 1.53778 * 87.08081 * 139.98080 * 11 9 8 13 13 H 1.09004 * 113.61886 * 89.12045 * 12 11 9 14 14 C 1.53001 * 113.61526 * 220.01868 * 12 11 9 15 15 O 1.42901 * 109.47278 * 272.50133 * 14 12 11 16 16 C 1.35920 * 116.99783 * 180.02562 * 15 14 12 17 17 C 1.38713 * 120.03216 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.01312 * 359.94967 * 17 16 15 19 19 O 1.42897 * 109.46939 * 284.99991 * 18 17 16 20 20 Si 1.86298 * 109.46721 * 165.00235 * 18 17 16 21 21 C 1.38182 * 119.97141 * 179.97438 * 17 16 15 22 22 C 1.38315 * 120.05343 * 359.97438 * 21 17 16 23 23 Cl 1.73597 * 119.96182 * 179.97438 * 22 21 17 24 24 C 1.38474 * 120.07848 * 359.97438 * 22 21 17 25 25 Br 1.89099 * 119.99058 * 180.02562 * 24 22 21 26 26 C 1.38212 * 120.02281 * 359.78133 * 24 22 21 27 27 C 1.53778 * 87.08449 * 334.56700 * 12 11 9 28 28 H 1.09002 * 109.46797 * 300.00573 * 1 2 3 29 29 H 1.09003 * 109.46912 * 59.99660 * 1 2 3 30 30 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47350 * 299.99503 * 3 2 1 33 33 H 1.08999 * 109.47271 * 59.99743 * 3 2 1 34 34 H 1.08997 * 109.47510 * 300.00599 * 4 2 1 35 35 H 1.09003 * 109.46886 * 60.00078 * 4 2 1 36 36 H 1.08997 * 109.47474 * 179.97438 * 4 2 1 37 37 H 0.96998 * 119.99607 * 0.02562 * 8 6 5 38 38 H 1.08993 * 113.61313 * 254.52676 * 11 9 8 39 39 H 1.09000 * 113.61578 * 25.43408 * 11 9 8 40 40 H 1.09008 * 109.46870 * 32.49758 * 14 12 11 41 41 H 1.09000 * 109.47055 * 152.49586 * 14 12 11 42 42 H 1.08998 * 109.47151 * 45.00363 * 18 17 16 43 43 H 0.96695 * 114.00028 * 60.00574 * 19 18 17 44 44 H 1.48507 * 109.99925 * 178.68006 * 20 18 17 45 45 H 1.48506 * 110.00234 * 299.99692 * 20 18 17 46 46 H 1.08001 * 119.96817 * 180.02562 * 21 17 16 47 47 H 1.08001 * 120.02559 * 180.25716 * 26 24 22 48 48 H 1.08998 * 113.61879 * 270.88747 * 27 12 11 49 49 H 1.08997 * 113.69304 * 139.98833 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4167 9 6 1.6746 -4.0671 2.5827 10 1 0.7607 -4.3179 2.0442 11 6 2.8230 -5.0616 2.3441 12 6 2.2748 -5.8600 3.5386 13 1 1.5251 -6.6012 3.2614 14 6 3.3658 -6.4283 4.4485 15 8 3.7765 -7.7064 3.9589 16 6 4.7463 -8.3526 4.6585 17 6 5.1920 -9.5975 4.2394 18 6 4.6004 -10.2350 3.0087 19 8 3.2955 -10.7329 3.3108 20 14 5.6887 -11.6416 2.4539 21 6 6.1784 -10.2531 4.9513 22 6 6.7220 -9.6687 6.0809 23 17 7.9606 -10.4947 6.9738 24 6 6.2793 -8.4256 6.5005 25 35 7.0247 -7.6286 8.0449 26 6 5.2965 -7.7648 5.7881 27 6 1.6758 -4.5380 4.0467 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7210 -1.2495 37 1 2.6275 -2.2368 3.0829 38 1 2.7511 -5.5919 1.3946 39 1 3.8116 -4.6373 2.5193 40 1 4.2201 -5.7512 4.4580 41 1 2.9756 -6.5350 5.4606 42 1 4.5312 -9.4934 2.2130 43 1 2.6742 -10.0538 3.6069 44 1 5.0997 -12.2989 1.2596 45 1 7.0489 -11.1369 2.1367 46 1 6.5257 -11.2222 4.6247 47 1 4.9541 -6.7933 6.1130 48 1 2.3507 -3.9704 4.6873 49 1 0.6779 -4.6442 4.4720 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15163260_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:42:12 Heat of formation + Delta-G solvation = -105.492741 kcal Electronic energy + Delta-G solvation = -33252.425849 eV Core-core repulsion = 28447.601492 eV Total energy + Delta-G solvation = -4804.824357 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.053 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.02015 -41.73948 -40.54502 -39.01872 -37.96332 -37.77594 -37.17695 -35.35822 -34.30706 -33.88341 -31.51614 -31.12305 -29.50599 -28.35612 -28.31558 -27.03123 -26.56182 -25.31240 -23.83641 -22.91830 -22.34046 -21.46311 -20.65713 -19.50482 -19.07717 -18.45548 -18.26881 -17.59492 -17.46773 -17.22536 -17.09664 -16.66937 -16.44648 -15.92368 -15.70149 -15.56640 -15.35926 -15.23496 -14.97642 -14.85788 -14.44494 -14.19060 -14.04883 -13.81753 -13.71784 -13.54972 -13.45154 -13.22657 -13.03466 -12.91447 -12.85563 -12.83375 -12.56367 -12.47026 -12.33682 -12.29735 -12.23514 -12.08861 -12.01209 -11.72629 -11.49827 -11.41225 -11.32886 -11.26416 -11.18132 -10.99921 -10.22999 -10.18013 -9.42091 -4.94668 -0.42974 -0.18638 0.26965 0.98007 1.13939 1.30480 1.59330 1.72659 1.83205 1.96122 2.05888 3.04533 3.12748 3.19212 3.27693 3.33074 3.49550 3.51443 3.61312 3.74846 3.79001 3.80463 3.89338 3.93637 3.94425 3.96116 4.06733 4.15776 4.17398 4.36927 4.41125 4.46840 4.48372 4.53697 4.57115 4.60326 4.66828 4.69625 4.75497 4.76635 4.80504 4.84007 4.90375 4.97260 5.06117 5.07941 5.26707 5.33687 5.43359 5.56319 5.91609 6.35703 6.48863 7.37814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.565 6.565 8 N -0.702 5.702 9 C 0.142 3.858 10 H 0.123 0.877 11 C -0.148 4.148 12 C -0.106 4.106 13 H 0.111 0.889 14 C 0.067 3.933 15 O -0.304 6.304 16 C 0.153 3.847 17 C -0.119 4.119 18 C -0.070 4.070 19 O -0.531 6.531 20 Si 0.737 3.263 21 C -0.056 4.056 22 C -0.045 4.045 23 Cl -0.037 7.037 24 C -0.045 4.045 25 Br -0.016 7.016 26 C -0.169 4.169 27 C -0.136 4.136 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.406 0.594 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.368 0.632 44 H -0.250 1.250 45 H -0.246 1.246 46 H 0.155 0.845 47 H 0.149 0.851 48 H 0.093 0.907 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 2.458 1.763 3.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.038 3.962 10 H 0.141 0.859 11 C -0.187 4.187 12 C -0.125 4.125 13 H 0.129 0.871 14 C -0.008 4.008 15 O -0.217 6.217 16 C 0.106 3.894 17 C -0.121 4.121 18 C -0.178 4.178 19 O -0.336 6.336 20 Si 0.635 3.365 21 C -0.075 4.075 22 C -0.075 4.075 23 Cl -0.008 7.008 24 C -0.126 4.126 25 Br 0.070 6.930 26 C -0.190 4.190 27 C -0.174 4.174 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.215 0.785 44 H -0.174 1.174 45 H -0.171 1.171 46 H 0.172 0.828 47 H 0.167 0.833 48 H 0.111 0.889 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.200 1.590 0.944 1.860 hybrid contribution -0.430 1.876 0.081 1.927 sum -0.231 3.466 1.025 3.622 Atomic orbital electron populations 1.22524 0.93810 1.05040 1.02746 1.22124 0.94464 0.91561 0.81833 1.21880 1.02329 0.92346 1.03366 1.22521 1.01594 1.03451 0.96566 1.86308 1.71471 1.23459 1.46772 1.18171 0.78596 0.80573 0.82256 1.90921 1.40958 1.70513 1.43008 1.44732 1.55408 1.12118 1.23820 1.22494 0.99309 0.77614 0.96828 0.85894 1.23637 0.99058 0.96830 0.99180 1.22350 0.97566 0.96246 0.96357 0.87056 1.22981 0.97450 0.82144 0.98236 1.86083 1.51253 1.33081 1.51269 1.18687 0.89038 0.91313 0.90357 1.19792 0.98964 0.93267 1.00095 1.25354 0.90410 1.07328 0.94726 1.86757 1.19880 1.37783 1.89165 0.93059 0.76362 0.82307 0.84815 1.20713 0.94783 0.99505 0.92513 1.20581 0.96708 0.93670 0.96494 1.98419 1.50979 1.77521 1.73874 1.21601 0.99499 0.95038 0.96440 1.96855 1.83057 1.80747 1.32344 1.21155 0.99299 1.02032 0.96496 1.23400 1.02732 0.94977 0.96268 0.92106 0.90900 0.89441 0.91406 0.89896 0.91385 0.89431 0.90902 0.92143 0.75836 0.90118 0.89307 0.91264 0.90966 0.90161 0.78454 1.17416 1.17079 0.82838 0.83338 0.88881 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.20 8.37 37.16 0.31 0.11 16 2 C 0.14 0.15 1.13 -90.62 -0.10 0.05 16 3 C -0.14 0.13 8.85 37.16 0.33 0.45 16 4 C -0.18 -0.22 8.37 37.16 0.31 0.09 16 5 O -0.37 -0.75 9.94 -40.32 -0.40 -1.15 16 6 C 0.65 1.46 8.06 54.05 0.44 1.90 16 7 O -0.57 -2.62 11.48 -19.28 -0.22 -2.84 16 8 N -0.70 0.71 5.36 -57.93 -0.31 0.40 16 9 C 0.14 -0.30 4.24 -67.12 -0.28 -0.58 16 10 H 0.12 -0.08 7.47 -51.93 -0.39 -0.46 16 11 C -0.15 0.38 7.43 -25.92 -0.19 0.18 16 12 C -0.11 0.41 4.01 -89.81 -0.36 0.05 16 13 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 14 C 0.07 -0.24 4.58 37.16 0.17 -0.07 16 15 O -0.30 0.42 9.04 -19.49 -0.18 0.24 16 16 C 0.15 -0.06 6.62 -39.23 -0.26 -0.32 16 17 C -0.12 -0.01 5.28 -104.47 -0.55 -0.56 16 18 C -0.07 -0.01 2.33 36.00 0.08 0.08 16 19 O -0.53 -0.37 12.65 -35.23 -0.45 -0.81 16 20 Si 0.74 -0.27 30.17 -169.99 -5.13 -5.40 16 21 C -0.06 0.00 8.44 -39.57 -0.33 -0.33 16 22 C -0.05 -0.04 6.32 -39.47 -0.25 -0.29 16 23 Cl -0.04 -0.04 27.73 -51.86 -1.44 -1.47 16 24 C -0.04 -0.03 6.22 -39.50 -0.25 -0.27 16 25 Br -0.02 -0.01 32.52 -68.01 -2.21 -2.22 16 26 C -0.17 0.11 8.78 -39.41 -0.35 -0.23 16 27 C -0.14 0.61 7.39 -25.92 -0.19 0.42 16 28 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.09 0.27 5.88 -51.93 -0.31 -0.03 16 31 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 35 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.41 -1.26 8.84 -40.82 -0.36 -1.62 16 38 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 39 H 0.09 -0.24 7.90 -51.93 -0.41 -0.65 16 40 H 0.07 -0.29 7.35 -51.92 -0.38 -0.67 16 41 H 0.07 -0.32 7.68 -51.93 -0.40 -0.72 16 42 H 0.08 0.01 7.83 -51.93 -0.41 -0.40 16 43 H 0.37 -0.53 8.60 45.56 0.39 -0.14 16 44 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 45 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 46 H 0.15 -0.31 5.13 -52.49 -0.27 -0.58 16 47 H 0.15 -0.38 6.30 -52.49 -0.33 -0.71 16 48 H 0.09 -0.52 8.08 -51.93 -0.42 -0.94 16 49 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 LS Contribution 427.86 15.07 6.45 6.45 Total: 0.00 -6.12 427.86 -12.37 -18.48 By element: Atomic # 1 Polarization: -5.35 SS G_CDS: -7.01 Total: -12.36 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.48 Total: 0.68 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -0.31 Total: 0.40 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -1.24 Total: -4.56 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: -5.13 Total: -5.40 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.44 Total: -1.47 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -6.12 -12.37 -18.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.008 kcal (2) G-P(sol) polarization free energy of solvation -6.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds