Wall clock time and date at job start Tue Mar 9 2021 16:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47197 * 2 1 4 4 C 1.52996 * 109.46941 * 239.99619 * 2 1 3 5 5 O 1.45200 * 109.46958 * 119.99890 * 2 1 3 6 6 C 1.34638 * 116.99938 * 59.99470 * 5 2 1 7 7 O 1.21514 * 120.00036 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00091 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.90889 * 336.25053 * 9 8 6 11 11 C 1.53784 * 113.61524 * 107.50411 * 9 8 6 12 12 C 1.53778 * 87.08081 * 139.98080 * 11 9 8 13 13 H 1.09004 * 113.61886 * 89.12045 * 12 11 9 14 14 C 1.53001 * 113.61526 * 220.01868 * 12 11 9 15 15 O 1.42901 * 109.47278 * 272.50133 * 14 12 11 16 16 C 1.35920 * 116.99783 * 180.02562 * 15 14 12 17 17 C 1.38713 * 120.03216 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.01312 * 359.94967 * 17 16 15 19 19 O 1.42897 * 109.46939 * 284.99991 * 18 17 16 20 20 Si 1.86298 * 109.46721 * 165.00235 * 18 17 16 21 21 C 1.38182 * 119.97141 * 179.97438 * 17 16 15 22 22 C 1.38315 * 120.05343 * 359.97438 * 21 17 16 23 23 Cl 1.73597 * 119.96182 * 179.97438 * 22 21 17 24 24 C 1.38474 * 120.07848 * 359.97438 * 22 21 17 25 25 Br 1.89099 * 119.99058 * 180.02562 * 24 22 21 26 26 C 1.38212 * 120.02281 * 359.78133 * 24 22 21 27 27 C 1.53778 * 87.08449 * 334.56700 * 12 11 9 28 28 H 1.09002 * 109.46797 * 300.00573 * 1 2 3 29 29 H 1.09003 * 109.46912 * 59.99660 * 1 2 3 30 30 H 1.08997 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47350 * 299.99503 * 3 2 1 33 33 H 1.08999 * 109.47271 * 59.99743 * 3 2 1 34 34 H 1.08997 * 109.47510 * 300.00599 * 4 2 1 35 35 H 1.09003 * 109.46886 * 60.00078 * 4 2 1 36 36 H 1.08997 * 109.47474 * 179.97438 * 4 2 1 37 37 H 0.96998 * 119.99607 * 0.02562 * 8 6 5 38 38 H 1.08993 * 113.61313 * 254.52676 * 11 9 8 39 39 H 1.09000 * 113.61578 * 25.43408 * 11 9 8 40 40 H 1.09008 * 109.46870 * 32.49758 * 14 12 11 41 41 H 1.09000 * 109.47055 * 152.49586 * 14 12 11 42 42 H 1.08998 * 109.47151 * 45.00363 * 18 17 16 43 43 H 0.96695 * 114.00028 * 60.00574 * 19 18 17 44 44 H 1.48507 * 109.99925 * 178.68006 * 20 18 17 45 45 H 1.48506 * 110.00234 * 299.99692 * 20 18 17 46 46 H 1.08001 * 119.96817 * 180.02562 * 21 17 16 47 47 H 1.08001 * 120.02559 * 180.25716 * 26 24 22 48 48 H 1.08998 * 113.61879 * 270.88747 * 27 12 11 49 49 H 1.08997 * 113.69304 * 139.98833 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4167 9 6 1.6746 -4.0671 2.5827 10 1 0.7607 -4.3179 2.0442 11 6 2.8230 -5.0616 2.3441 12 6 2.2748 -5.8600 3.5386 13 1 1.5251 -6.6012 3.2614 14 6 3.3658 -6.4283 4.4485 15 8 3.7765 -7.7064 3.9589 16 6 4.7463 -8.3526 4.6585 17 6 5.1920 -9.5975 4.2394 18 6 4.6004 -10.2350 3.0087 19 8 3.2955 -10.7329 3.3108 20 14 5.6887 -11.6416 2.4539 21 6 6.1784 -10.2531 4.9513 22 6 6.7220 -9.6687 6.0809 23 17 7.9606 -10.4947 6.9738 24 6 6.2793 -8.4256 6.5005 25 35 7.0247 -7.6286 8.0449 26 6 5.2965 -7.7648 5.7881 27 6 1.6758 -4.5380 4.0467 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7210 -1.2495 37 1 2.6275 -2.2368 3.0829 38 1 2.7511 -5.5919 1.3946 39 1 3.8116 -4.6373 2.5193 40 1 4.2201 -5.7512 4.4580 41 1 2.9756 -6.5350 5.4606 42 1 4.5312 -9.4934 2.2130 43 1 2.6742 -10.0538 3.6069 44 1 5.0997 -12.2989 1.2596 45 1 7.0489 -11.1369 2.1367 46 1 6.5257 -11.2222 4.6247 47 1 4.9541 -6.7933 6.1130 48 1 2.3507 -3.9704 4.6873 49 1 0.6779 -4.6442 4.4720 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_15734236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:42:11 Heat of formation + Delta-G solvation = -100.234418 kcal Electronic energy + Delta-G solvation = -33252.197831 eV Core-core repulsion = 28447.601492 eV Total energy + Delta-G solvation = -4804.596339 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.053 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.99294 -41.74137 -40.41813 -38.94123 -37.99831 -37.81935 -37.17778 -35.44591 -34.29656 -33.86253 -31.45028 -31.08770 -29.33929 -28.41020 -28.33973 -26.78315 -26.54427 -25.23765 -23.80180 -22.86646 -22.27356 -21.43618 -20.55210 -19.43031 -19.10640 -18.43517 -18.20048 -17.62802 -17.36785 -17.23642 -17.08985 -16.61288 -16.29961 -15.86760 -15.66727 -15.59937 -15.41187 -15.22066 -14.92332 -14.81638 -14.48631 -14.17700 -14.01940 -13.69855 -13.51292 -13.44241 -13.38675 -13.20505 -12.96273 -12.91764 -12.90175 -12.76276 -12.53894 -12.46702 -12.36238 -12.32468 -12.22329 -12.12086 -11.79399 -11.62744 -11.45336 -11.43510 -11.29715 -11.27021 -11.18016 -11.14376 -10.19073 -10.14177 -9.37347 -4.95222 -0.40179 -0.13486 0.27530 0.98450 1.13448 1.29720 1.57636 1.69258 1.89533 1.92061 2.10066 3.11351 3.33416 3.37457 3.38375 3.44128 3.69001 3.70272 3.71050 3.73594 3.76801 3.84120 3.90521 4.02402 4.09832 4.17339 4.23045 4.26861 4.39270 4.46625 4.53564 4.57100 4.60853 4.62356 4.67341 4.72405 4.75086 4.76902 4.80541 4.83480 4.83836 4.92378 5.00135 5.04576 5.13144 5.17842 5.22826 5.28411 5.46339 5.56438 6.06742 6.36375 6.57680 7.30452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.689 5.689 9 C 0.132 3.868 10 H 0.103 0.897 11 C -0.148 4.148 12 C -0.097 4.097 13 H 0.109 0.891 14 C 0.061 3.939 15 O -0.310 6.310 16 C 0.155 3.845 17 C -0.128 4.128 18 C -0.072 4.072 19 O -0.542 6.542 20 Si 0.794 3.206 21 C -0.059 4.059 22 C -0.058 4.058 23 Cl -0.044 7.044 24 C -0.053 4.053 25 Br -0.020 7.020 26 C -0.167 4.167 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.377 0.623 44 H -0.291 1.291 45 H -0.261 1.261 46 H 0.168 0.832 47 H 0.168 0.832 48 H 0.112 0.888 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 3.475 2.803 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.348 5.348 9 C 0.028 3.972 10 H 0.121 0.879 11 C -0.187 4.187 12 C -0.116 4.116 13 H 0.127 0.873 14 C -0.013 4.013 15 O -0.223 6.223 16 C 0.108 3.892 17 C -0.130 4.130 18 C -0.180 4.180 19 O -0.348 6.348 20 Si 0.695 3.305 21 C -0.078 4.078 22 C -0.087 4.087 23 Cl -0.015 7.015 24 C -0.134 4.134 25 Br 0.066 6.934 26 C -0.187 4.187 27 C -0.156 4.156 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.226 0.774 44 H -0.218 1.218 45 H -0.187 1.187 46 H 0.185 0.815 47 H 0.186 0.814 48 H 0.130 0.870 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.296 2.621 2.026 3.326 hybrid contribution -0.504 1.576 -0.316 1.684 sum -0.208 4.197 1.710 4.537 Atomic orbital electron populations 1.22473 0.93998 1.03684 1.03548 1.22340 0.94483 0.92573 0.81481 1.21891 1.02433 0.90882 1.04283 1.22472 1.01579 1.02235 0.97456 1.86311 1.71529 1.23398 1.47224 1.18468 0.78582 0.80698 0.82707 1.90907 1.42407 1.71057 1.44269 1.44766 1.54792 1.12290 1.23001 1.22581 0.98759 0.77063 0.98757 0.87872 1.23630 0.99145 0.96859 0.99077 1.22264 0.97395 0.96369 0.95597 0.87253 1.23175 0.97850 0.81399 0.98884 1.86089 1.50858 1.33978 1.51394 1.18726 0.89008 0.91175 0.90318 1.19825 0.99269 0.93749 1.00137 1.25379 0.90370 1.07367 0.94896 1.86717 1.20293 1.38571 1.89261 0.92356 0.74618 0.80646 0.82860 1.20881 0.94613 1.00079 0.92241 1.20677 0.97035 0.94025 0.96947 1.98413 1.51334 1.77689 1.74073 1.21720 0.99958 0.95161 0.96563 1.96846 1.83231 1.80703 1.32648 1.21337 0.98684 1.02640 0.96047 1.23349 1.03590 0.94105 0.94603 0.91838 0.89525 0.91802 0.91220 0.88358 0.91088 0.91848 0.89507 0.92025 0.74470 0.91930 0.88796 0.90212 0.89364 0.90331 0.77406 1.21849 1.18682 0.81486 0.81417 0.86961 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.31 16 3 C -0.14 0.34 8.85 71.98 0.64 0.98 16 4 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 5 O -0.37 -1.74 9.94 -55.48 -0.55 -2.29 16 6 C 0.64 3.62 8.06 129.79 1.05 4.66 16 7 O -0.60 -6.77 11.48 19.80 0.23 -6.55 16 8 N -0.69 1.20 5.36 -567.59 -3.04 -1.84 16 9 C 0.13 -0.51 4.24 45.52 0.19 -0.32 16 10 H 0.10 0.04 7.47 -2.39 -0.02 0.03 16 11 C -0.15 0.72 7.43 31.12 0.23 0.95 16 12 C -0.10 0.84 4.01 -10.27 -0.04 0.79 16 13 H 0.11 -0.86 8.14 -2.38 -0.02 -0.88 16 14 C 0.06 -0.54 4.58 71.98 0.33 -0.21 16 15 O -0.31 1.14 9.04 -92.65 -0.84 0.31 16 16 C 0.16 -0.25 6.62 22.50 0.15 -0.10 16 17 C -0.13 0.03 5.28 -19.76 -0.10 -0.08 16 18 C -0.07 -0.02 2.33 71.24 0.17 0.15 16 19 O -0.54 -0.74 12.65 -148.98 -1.89 -2.63 16 20 Si 0.79 -0.14 30.17 68.60 2.07 1.93 16 21 C -0.06 0.02 8.44 22.27 0.19 0.21 16 22 C -0.06 -0.08 6.32 22.34 0.14 0.06 16 23 Cl -0.04 -0.09 27.73 -2.72 -0.08 -0.17 16 24 C -0.05 -0.03 6.22 22.32 0.14 0.11 16 25 Br -0.02 -0.02 32.52 -20.37 -0.66 -0.68 16 26 C -0.17 0.41 8.78 22.38 0.20 0.61 16 27 C -0.12 1.22 7.39 31.12 0.23 1.45 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 35 H 0.09 -0.02 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.42 -2.83 8.84 -92.71 -0.82 -3.65 16 38 H 0.06 -0.07 8.14 -2.39 -0.02 -0.08 16 39 H 0.09 -0.54 7.90 -2.39 -0.02 -0.56 16 40 H 0.08 -0.84 7.35 -2.38 -0.02 -0.85 16 41 H 0.09 -1.01 7.68 -2.39 -0.02 -1.03 16 42 H 0.08 0.04 7.83 -2.39 -0.02 0.02 16 43 H 0.38 -1.16 8.60 -74.06 -0.64 -1.80 16 44 H -0.29 -1.94 7.11 99.48 0.71 -1.24 16 45 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 46 H 0.17 -0.71 5.13 -2.91 -0.01 -0.73 16 47 H 0.17 -1.19 6.30 -2.91 -0.02 -1.21 16 48 H 0.11 -1.53 8.08 -2.39 -0.02 -1.55 16 49 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 Total: 0.00 -16.02 427.86 -0.47 -16.50 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: -0.41 Total: -14.27 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 4.69 Total: 9.69 kcal Atomic # 7 Polarization: 1.20 SS G_CDS: -3.04 Total: -1.84 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -3.05 Total: -11.16 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: 2.07 Total: 1.93 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.66 Total: -0.68 kcal Total: -16.02 -0.47 -16.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_15734236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.739 kcal (2) G-P(sol) polarization free energy of solvation -16.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds