Wall clock time and date at job start Tue Mar 9 2021 16:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46854 * 2 1 4 4 C 1.86298 * 109.46924 * 240.00247 * 2 1 3 5 5 C 1.86798 * 109.47047 * 120.00218 * 2 1 3 6 6 C 1.38230 * 120.00344 * 90.00138 * 5 2 1 7 7 C 1.38230 * 120.00351 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00004 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.99936 * 179.97438 * 8 7 6 10 10 O 1.42903 * 109.47233 * 89.99627 * 9 8 7 11 11 C 1.35922 * 117.00083 * 179.97438 * 10 9 8 12 12 C 1.38691 * 120.03576 * 0.02562 * 11 10 9 13 13 C 1.38255 * 119.94356 * 179.97438 * 12 11 10 14 14 Br 1.89097 * 119.98469 * 180.02562 * 13 12 11 15 15 C 1.38429 * 120.02340 * 359.97438 * 13 12 11 16 16 Cl 1.73606 * 119.96045 * 179.97438 * 15 13 12 17 17 C 1.38360 * 120.07692 * 0.02562 * 15 13 12 18 18 C 1.38130 * 120.05659 * 359.97438 * 17 15 13 19 19 C 1.50693 * 120.01538 * 180.02562 * 18 17 15 20 20 O 1.42898 * 109.47772 * 104.99783 * 19 18 17 21 21 Si 1.86308 * 109.47104 * 344.99765 * 19 18 17 22 22 H 1.48493 * 109.46989 * 59.99795 * 21 19 18 23 23 H 1.48501 * 109.46859 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46739 * 299.99780 * 21 19 18 25 25 C 1.38234 * 119.99802 * 0.24632 * 8 7 6 26 26 C 1.38234 * 119.99826 * 359.49838 * 25 8 7 27 27 H 1.09000 * 109.47025 * 299.99815 * 1 2 3 28 28 H 1.08998 * 109.47518 * 59.99562 * 1 2 3 29 29 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46686 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47229 * 299.99740 * 3 2 1 32 32 H 1.09000 * 109.47153 * 60.00263 * 3 2 1 33 33 H 1.09004 * 109.47201 * 299.99996 * 4 2 1 34 34 H 1.08999 * 109.47124 * 60.00275 * 4 2 1 35 35 H 1.08998 * 109.47011 * 180.02562 * 4 2 1 36 36 H 1.08009 * 119.99447 * 359.97438 * 6 5 2 37 37 H 1.08003 * 119.99854 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47452 * 329.99269 * 9 8 7 39 39 H 1.09001 * 109.47265 * 209.99604 * 9 8 7 40 40 H 1.07997 * 120.03075 * 0.25655 * 12 11 10 41 41 H 1.08007 * 119.97292 * 180.02562 * 17 15 13 42 42 H 1.09004 * 109.47479 * 225.00045 * 19 18 17 43 43 H 0.96708 * 113.99349 * 300.00403 * 20 19 18 44 44 H 1.08000 * 120.00070 * 179.72371 * 25 8 7 45 45 H 1.08002 * 119.99661 * 180.23004 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7161 -2.2432 1.4910 7 6 3.1763 -2.8949 2.6197 8 6 3.4057 -2.1842 3.7830 9 6 3.9068 -2.8948 5.0137 10 8 5.3359 -2.8950 5.0150 11 6 5.9520 -3.5003 6.0645 12 6 5.1964 -4.0822 7.0715 13 6 5.8251 -4.6979 8.1379 14 35 4.7961 -5.4924 9.5111 15 6 7.2075 -4.7338 8.2001 16 17 7.9952 -5.5067 9.5403 17 6 7.9622 -4.1535 7.1961 18 6 7.3374 -3.5376 6.1292 19 6 8.1603 -2.9064 5.0358 20 8 8.1284 -3.7386 3.8746 21 14 9.9208 -2.7156 5.6149 22 1 10.4798 -4.0506 5.9473 23 1 10.7314 -2.0930 4.5377 24 1 9.9539 -1.8506 6.8215 25 6 3.1699 -0.8226 3.8189 26 6 2.7147 -0.1700 2.6885 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7565 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1206 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5212 34 1 2.1206 -0.3643 -2.4111 35 1 3.5739 -0.8786 -1.5210 36 1 2.5357 -2.7987 0.5824 37 1 3.3559 -3.9596 2.5930 38 1 3.5434 -3.9225 5.0133 39 1 3.5428 -2.3812 5.9035 40 1 4.1179 -4.0585 7.0204 41 1 9.0407 -4.1829 7.2461 42 1 7.7499 -1.9264 4.7919 43 1 8.4794 -4.6281 4.0186 44 1 3.3448 -0.2681 4.7290 45 1 2.5340 0.8945 2.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15163260_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:47:44 Heat of formation + Delta-G solvation = -67.461360 kcal Electronic energy + Delta-G solvation = -27444.770517 eV Core-core repulsion = 23429.877093 eV Total energy + Delta-G solvation = -4014.893424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 428.012 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77262 -40.18430 -38.86594 -37.95755 -37.16602 -33.96248 -33.09734 -31.91420 -31.33557 -30.80918 -29.59236 -28.45865 -28.43336 -27.50888 -26.57413 -24.01509 -23.51822 -22.84057 -21.97486 -19.53068 -18.55422 -17.85774 -17.52390 -17.28776 -16.94567 -16.35381 -16.14459 -15.86602 -15.49894 -15.46838 -14.94934 -14.71477 -14.66842 -14.38824 -14.24239 -14.18549 -14.02744 -13.87304 -13.83134 -13.56422 -13.28734 -13.27942 -13.11832 -13.03651 -12.91868 -12.64885 -12.43633 -12.36091 -12.23242 -11.99779 -11.95717 -11.82064 -11.50070 -11.22272 -11.06630 -10.92276 -10.86239 -10.47640 -10.16498 -9.80618 -9.72728 -9.34633 -0.39880 -0.13254 0.12000 0.30342 0.52224 1.00220 1.04984 1.33162 1.44910 1.67755 1.82049 1.82880 1.84865 2.09465 2.12850 2.52293 2.97949 3.28790 3.33829 3.58080 3.62924 3.69186 3.70928 4.00080 4.05074 4.13683 4.15882 4.21150 4.36311 4.46756 4.52624 4.63124 4.64485 4.68477 4.69835 4.73454 4.74199 4.74740 4.75004 4.82638 4.96636 5.11852 5.12130 5.36836 5.43820 5.48402 5.51859 5.57895 5.59912 6.06202 6.08988 6.51828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.102 4.102 8 C -0.089 4.089 9 C 0.095 3.905 10 O -0.285 6.285 11 C 0.172 3.828 12 C -0.175 4.175 13 C -0.041 4.041 14 Br -0.017 7.017 15 C -0.049 4.049 16 Cl -0.041 7.041 17 C -0.074 4.074 18 C -0.128 4.128 19 C -0.068 4.068 20 O -0.528 6.528 21 Si 0.938 3.062 22 H -0.247 1.247 23 H -0.246 1.246 24 H -0.244 1.244 25 C -0.105 4.105 26 C -0.092 4.092 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.374 0.626 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 1.344 -2.071 2.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.109 4.109 7 C -0.120 4.120 8 C -0.089 4.089 9 C 0.021 3.979 10 O -0.197 6.197 11 C 0.124 3.876 12 C -0.196 4.196 13 C -0.122 4.122 14 Br 0.069 6.931 15 C -0.078 4.078 16 Cl -0.012 7.012 17 C -0.093 4.093 18 C -0.130 4.130 19 C -0.179 4.179 20 O -0.332 6.332 21 Si 0.759 3.241 22 H -0.171 1.171 23 H -0.169 1.169 24 H -0.167 1.167 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.141 0.859 43 H 0.221 0.779 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.073 1.675 -1.525 2.506 hybrid contribution -0.146 -0.674 0.389 0.792 sum -1.219 1.001 -1.136 1.944 Atomic orbital electron populations 1.26123 1.20428 1.04587 1.04515 0.78190 0.66832 0.66148 0.63712 1.26137 1.06525 1.18524 1.04568 1.26137 1.06546 1.08040 1.15051 1.27485 1.02855 0.99520 1.10208 1.21080 0.97440 0.94665 0.97721 1.21139 0.98453 0.99924 0.92516 1.19355 1.01176 0.94157 0.94232 1.21775 0.78301 1.00772 0.97101 1.86308 1.21090 1.71676 1.40655 1.18661 0.91242 0.91186 0.86487 1.21220 1.01098 1.02926 0.94307 1.21599 0.92398 1.01831 0.96329 1.96851 1.69265 1.80281 1.46668 1.20513 0.90983 1.02999 0.93284 1.98414 1.79868 1.79136 1.43777 1.20876 1.00546 0.96112 0.91801 1.19745 0.91707 1.03377 0.98157 1.24856 1.08716 0.97302 0.86990 1.86603 1.86870 1.27669 1.32100 0.85890 0.75306 0.81935 0.80958 1.17112 1.16915 1.16743 1.21133 0.98814 0.93486 0.98921 1.21073 0.97553 0.99753 0.92601 0.91176 0.90998 0.91164 0.91003 0.90928 0.91182 0.91166 0.90935 0.90988 0.85857 0.86095 0.90675 0.90708 0.83243 0.83390 0.85934 0.77946 0.86135 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.79 8.65 101.05 0.87 1.67 16 2 Si 1.06 -2.85 12.32 -169.99 -2.09 -4.94 16 3 C -0.45 0.86 8.53 101.05 0.86 1.73 16 4 C -0.45 0.83 8.53 101.05 0.86 1.69 16 5 C -0.36 0.15 4.59 -39.58 -0.18 -0.03 16 6 C -0.09 -0.01 9.29 -39.59 -0.37 -0.38 16 7 C -0.10 -0.07 9.70 -39.58 -0.38 -0.46 16 8 C -0.09 -0.07 5.51 -104.63 -0.58 -0.64 16 9 C 0.09 -0.04 4.87 36.00 0.18 0.13 16 10 O -0.28 -0.39 9.45 -19.49 -0.18 -0.58 16 11 C 0.17 0.16 6.66 -39.23 -0.26 -0.10 16 12 C -0.17 -0.07 8.78 -39.41 -0.35 -0.41 16 13 C -0.04 -0.05 6.22 -39.50 -0.25 -0.30 16 14 Br -0.02 -0.02 32.52 -68.01 -2.21 -2.23 16 15 C -0.05 -0.07 6.32 -39.47 -0.25 -0.32 16 16 Cl -0.04 -0.07 27.73 -51.86 -1.44 -1.51 16 17 C -0.07 -0.03 8.44 -39.58 -0.33 -0.36 16 18 C -0.13 -0.07 5.27 -104.48 -0.55 -0.62 16 19 C -0.07 0.01 2.38 36.00 0.09 0.09 16 20 O -0.53 -0.33 12.88 -35.23 -0.45 -0.78 16 21 Si 0.94 -0.71 25.49 -169.99 -4.33 -5.04 16 22 H -0.25 0.29 6.73 56.52 0.38 0.67 16 23 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 24 H -0.24 0.04 7.11 56.52 0.40 0.45 16 25 C -0.11 -0.05 9.70 -39.58 -0.38 -0.43 16 26 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.12 -0.21 7.43 -52.48 -0.39 -0.60 16 37 H 0.12 -0.06 8.06 -52.48 -0.42 -0.48 16 38 H 0.08 -0.12 7.60 -51.93 -0.39 -0.52 16 39 H 0.07 -0.14 7.61 -51.93 -0.39 -0.53 16 40 H 0.15 -0.20 6.30 -52.49 -0.33 -0.53 16 41 H 0.15 -0.14 4.89 -52.48 -0.26 -0.40 16 42 H 0.12 0.00 7.83 -51.93 -0.41 -0.41 16 43 H 0.37 -1.06 8.70 45.56 0.40 -0.66 16 44 H 0.12 -0.11 8.06 -52.49 -0.42 -0.54 16 45 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 409.09 15.07 6.16 6.16 Total: 0.00 -5.32 409.09 -11.46 -16.78 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: -5.52 Total: -8.76 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.39 Total: 0.90 kcal Atomic # 8 Polarization: -0.72 SS G_CDS: -0.64 Total: -1.36 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: -6.43 Total: -9.98 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.44 Total: -1.51 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.21 Total: -2.23 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -5.32 -11.46 -16.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.682 kcal (2) G-P(sol) polarization free energy of solvation -5.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds