Wall clock time and date at job start Tue Mar 9 2021 16:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 C 1.52995 * 109.47252 * 240.00200 * 2 1 3 5 5 O 1.42898 * 109.47020 * 119.99605 * 2 1 3 6 6 C 1.42906 * 113.99882 * 60.00653 * 5 2 1 7 7 H 1.08997 * 112.84914 * 18.79801 * 6 5 2 8 8 C 1.53780 * 113.61269 * 149.99746 * 6 5 2 9 9 C 1.53779 * 87.07818 * 140.06593 * 8 6 5 10 10 H 1.09001 * 113.61514 * 89.19942 * 9 8 6 11 11 C 1.53006 * 113.61334 * 220.01959 * 9 8 6 12 12 O 1.42895 * 109.47036 * 185.00147 * 11 9 8 13 13 C 1.35901 * 117.00221 * 180.02562 * 12 11 9 14 14 C 1.38705 * 120.06062 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.02596 * 0.02562 * 14 13 12 16 16 O 1.42902 * 109.46855 * 75.00477 * 15 14 13 17 17 Si 1.86302 * 109.47008 * 194.99805 * 15 14 13 18 18 C 1.38165 * 119.94474 * 179.97438 * 14 13 12 19 19 C 1.38248 * 120.05851 * 359.97438 * 18 14 13 20 20 C 1.38288 * 120.10577 * 359.97438 * 19 18 14 21 21 C 1.50702 * 119.96555 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47452 * 359.97438 * 21 20 19 23 23 F 1.39897 * 109.47133 * 119.99756 * 21 20 19 24 24 F 1.39905 * 109.46487 * 239.99241 * 21 20 19 25 25 C 1.38117 * 120.05821 * 359.75703 * 20 19 18 26 26 C 1.53779 * 113.68758 * 247.53158 * 6 5 2 27 27 H 1.08991 * 109.47288 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.46950 * 60.00243 * 1 2 3 29 29 H 1.08998 * 109.46824 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46949 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47246 * 299.99575 * 3 2 1 32 32 H 1.09004 * 109.47009 * 60.00005 * 3 2 1 33 33 H 1.08999 * 109.46975 * 299.99489 * 4 2 1 34 34 H 1.09000 * 109.47505 * 59.99897 * 4 2 1 35 35 H 1.09005 * 109.47089 * 180.02562 * 4 2 1 36 36 H 1.08997 * 113.61807 * 25.51946 * 8 6 5 37 37 H 1.09003 * 113.69034 * 254.62121 * 8 6 5 38 38 H 1.09001 * 109.47002 * 304.99624 * 11 9 8 39 39 H 1.08993 * 109.46955 * 65.00062 * 11 9 8 40 40 H 1.08988 * 109.47095 * 315.00393 * 15 14 13 41 41 H 0.96699 * 113.99939 * 59.99867 * 16 15 14 42 42 H 1.48506 * 109.99716 * 58.68887 * 17 15 14 43 43 H 1.48502 * 109.99904 * 179.97438 * 17 15 14 44 44 H 1.08005 * 119.97146 * 179.97438 * 18 14 13 45 45 H 1.07995 * 119.94296 * 179.97438 * 19 18 14 46 46 H 1.08004 * 120.02598 * 180.27985 * 25 20 19 47 47 H 1.09008 * 113.61411 * 105.46137 * 26 6 5 48 48 H 1.08990 * 113.61765 * 334.55771 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5848 -2.0355 1.2645 7 1 1.2524 -2.4451 0.3107 8 6 2.5838 -2.9378 2.0079 9 6 1.3668 -3.6134 2.6614 10 1 0.9757 -4.4554 2.0902 11 6 1.5702 -3.9429 4.1417 12 8 0.4390 -4.6680 4.6280 13 6 0.4599 -5.0400 5.9350 14 6 -0.6056 -5.7460 6.4735 15 6 -1.7880 -6.1021 5.6096 16 8 -1.4339 -7.1772 4.7373 17 14 -3.2126 -6.6235 6.6910 18 6 -0.5816 -6.1235 7.8024 19 6 0.5034 -5.7985 8.5951 20 6 1.5674 -5.0956 8.0602 21 6 2.7489 -4.7435 8.9270 22 9 2.5390 -5.2303 10.2216 23 9 3.9067 -5.3199 8.3937 24 9 2.8975 -3.3531 8.9702 25 6 1.5507 -4.7208 6.7309 26 6 0.6069 -2.2980 2.4220 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.2162 -2.3999 2.7142 37 1 3.1498 -3.5986 1.3513 38 1 2.4683 -4.5494 4.2588 39 1 1.6798 -3.0181 4.7080 40 1 -2.0796 -5.2348 5.0175 41 1 -1.1631 -7.9837 5.1969 42 1 -3.5699 -5.5253 7.6248 43 1 -4.3852 -6.9767 5.8510 44 1 -1.4113 -6.6729 8.2223 45 1 0.5200 -6.0941 9.6337 46 1 2.3841 -4.1758 6.3126 47 1 -0.4240 -2.4420 2.0985 48 1 0.6988 -1.5853 3.2414 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15244776_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:48:31 Heat of formation + Delta-G solvation = -216.775784 kcal Electronic energy + Delta-G solvation = -33324.577663 eV Core-core repulsion = 28318.517824 eV Total energy + Delta-G solvation = -5006.059839 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.15367 -48.67028 -48.61058 -41.76158 -40.88668 -39.17039 -38.00487 -37.71467 -33.96947 -33.58003 -31.54806 -29.53486 -28.51326 -28.43222 -28.31933 -26.70194 -25.30819 -24.63755 -23.12435 -22.53398 -20.88122 -20.73114 -19.99876 -19.47630 -19.43935 -18.35549 -18.04665 -17.66263 -17.19743 -17.18916 -16.76156 -16.33850 -16.05149 -15.90339 -15.64133 -15.50765 -15.47840 -15.30549 -15.04216 -14.88085 -14.76036 -14.72644 -14.61247 -14.47796 -14.23276 -13.96936 -13.79660 -13.51993 -13.38665 -13.27802 -13.22304 -13.10916 -12.86094 -12.71815 -12.66999 -12.55316 -12.24364 -12.13954 -12.03940 -11.90657 -11.75213 -11.43245 -11.25634 -10.48206 -10.41669 -10.39002 -9.48958 -5.11230 -0.39061 0.08017 1.20435 1.58079 1.58947 1.92083 1.93140 2.18681 2.63412 2.68711 2.97069 3.36770 3.37874 3.39910 3.48111 3.51698 3.58763 3.69087 3.70810 3.84616 3.86591 3.88768 3.92520 4.02390 4.05203 4.12513 4.15020 4.29726 4.31505 4.44155 4.52508 4.56167 4.60339 4.69302 4.71251 4.72498 4.77364 4.80010 4.84885 4.87469 4.93155 4.94226 4.99520 5.05925 5.08911 5.24391 5.26605 5.30851 5.35653 6.16278 6.37305 6.54989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.361 6.361 6 C 0.063 3.937 7 H 0.093 0.907 8 C -0.127 4.127 9 C -0.108 4.108 10 H 0.107 0.893 11 C 0.066 3.934 12 O -0.294 6.294 13 C 0.159 3.841 14 C -0.124 4.124 15 C -0.059 4.059 16 O -0.532 6.532 17 Si 0.683 3.317 18 C -0.076 4.076 19 C -0.106 4.106 20 C -0.136 4.136 21 C 0.508 3.492 22 F -0.173 7.173 23 F -0.174 7.174 24 F -0.175 7.175 25 C -0.163 4.163 26 C -0.149 4.149 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.377 0.623 42 H -0.254 1.254 43 H -0.251 1.251 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.072 0.928 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -1.855 -1.051 2.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.005 3.995 7 H 0.111 0.889 8 C -0.164 4.164 9 C -0.127 4.127 10 H 0.125 0.875 11 C -0.008 4.008 12 O -0.207 6.207 13 C 0.112 3.888 14 C -0.125 4.125 15 C -0.169 4.169 16 O -0.336 6.336 17 Si 0.584 3.416 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.138 4.138 21 C 0.454 3.546 22 F -0.155 7.155 23 F -0.156 7.156 24 F -0.156 7.156 25 C -0.182 4.182 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.224 0.776 42 H -0.179 1.179 43 H -0.176 1.176 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.158 0.842 47 H 0.091 0.909 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.949 -1.156 -1.272 2.598 hybrid contribution 0.675 0.552 -0.224 0.900 sum -1.273 -0.605 -1.496 2.056 Atomic orbital electron populations 1.22471 0.95480 1.02528 1.02919 1.21542 0.93231 0.93282 0.85367 1.21772 1.02022 0.93206 1.02626 1.22472 1.02343 1.00860 0.97986 1.88036 1.73804 1.23248 1.42937 1.23554 0.95536 0.82858 0.97592 0.88946 1.23234 0.96334 0.97322 0.99547 1.22309 0.98646 0.98152 0.93555 0.87527 1.22947 0.87605 0.95497 0.94798 1.86191 1.43188 1.69728 1.21561 1.18560 0.92875 0.93562 0.83775 1.20003 0.96686 1.00974 0.94885 1.24982 1.00642 0.93313 0.98001 1.86573 1.89312 1.23178 1.34572 0.95107 0.77630 0.88167 0.80743 1.20836 0.98021 0.98636 0.91861 1.20908 0.92332 0.97946 1.01272 1.19769 0.95340 1.04255 0.94399 1.18259 0.82939 0.74788 0.78649 1.93189 1.94770 1.87793 1.39705 1.93239 1.51880 1.84436 1.85998 1.93242 1.96130 1.29815 1.96414 1.20987 0.99662 1.04259 0.93317 1.23624 0.99117 0.96243 0.99633 0.91691 0.91510 0.92290 0.91739 0.91042 0.91772 0.92223 0.91327 0.91575 0.88786 0.90280 0.91349 0.91441 0.86581 0.77645 1.17858 1.17585 0.83577 0.83572 0.84152 0.90920 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.06 8.38 37.16 0.31 0.37 16 2 C 0.10 0.03 1.11 -90.62 -0.10 -0.07 16 3 C -0.14 0.02 8.84 37.16 0.33 0.35 16 4 C -0.18 0.11 8.38 37.15 0.31 0.42 16 5 O -0.36 -0.61 10.00 -35.23 -0.35 -0.96 16 6 C 0.06 -0.01 2.82 -25.92 -0.07 -0.08 16 7 H 0.09 -0.07 5.54 -51.93 -0.29 -0.36 16 8 C -0.13 0.12 7.47 -25.92 -0.19 -0.08 16 9 C -0.11 0.08 4.01 -89.81 -0.36 -0.28 16 10 H 0.11 -0.06 8.14 -51.93 -0.42 -0.48 16 11 C 0.07 -0.03 4.58 37.16 0.17 0.14 16 12 O -0.29 -0.44 9.47 -19.43 -0.18 -0.62 16 13 C 0.16 0.17 6.66 -39.22 -0.26 -0.09 16 14 C -0.12 0.01 5.27 -104.47 -0.55 -0.55 16 15 C -0.06 0.01 2.38 36.01 0.09 0.10 16 16 O -0.53 -0.14 12.88 -35.23 -0.45 -0.59 16 17 Si 0.68 -1.11 29.92 -169.99 -5.09 -6.19 16 18 C -0.08 0.13 8.66 -39.60 -0.34 -0.22 16 19 C -0.11 0.09 9.43 -39.56 -0.37 -0.28 16 20 C -0.14 -0.08 5.37 -104.65 -0.56 -0.64 16 21 C 0.51 0.69 3.32 36.01 0.12 0.81 16 22 F -0.17 -0.25 15.97 2.25 0.04 -0.21 16 23 F -0.17 -0.36 17.23 2.25 0.04 -0.32 16 24 F -0.17 -0.40 17.24 2.25 0.04 -0.36 16 25 C -0.16 -0.10 8.59 -39.43 -0.34 -0.44 16 26 C -0.15 0.02 7.47 -25.92 -0.19 -0.17 16 27 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 29 H 0.06 -0.03 7.02 -51.93 -0.36 -0.39 16 30 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 32 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.06 -0.06 6.24 -51.93 -0.32 -0.38 16 34 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 36 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 37 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.07 -0.09 7.65 -51.93 -0.40 -0.49 16 39 H 0.07 -0.06 7.38 -51.93 -0.38 -0.44 16 40 H 0.12 0.12 7.83 -51.94 -0.41 -0.28 16 41 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 42 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 43 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 44 H 0.15 -0.67 5.13 -52.48 -0.27 -0.94 16 45 H 0.15 -0.37 7.15 -52.49 -0.38 -0.75 16 46 H 0.14 -0.07 6.30 -52.48 -0.33 -0.40 16 47 H 0.07 -0.01 8.14 -51.92 -0.42 -0.43 16 48 H 0.09 0.05 7.89 -51.93 -0.41 -0.36 16 LS Contribution 396.01 15.07 5.97 5.97 Total: 0.00 -5.79 396.01 -9.02 -14.80 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: -7.00 Total: -10.82 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.02 Total: -0.69 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: -0.99 Total: -2.17 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.11 Total: -0.89 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.09 Total: -6.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -5.79 -9.02 -14.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15244776_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.972 kcal (2) G-P(sol) polarization free energy of solvation -5.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds