Wall clock time and date at job start Tue Mar 9 2021 16:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 C 1.52995 * 109.47252 * 240.00200 * 2 1 3 5 5 O 1.42898 * 109.47020 * 119.99605 * 2 1 3 6 6 C 1.42906 * 113.99882 * 60.00653 * 5 2 1 7 7 H 1.08997 * 112.84914 * 18.79801 * 6 5 2 8 8 C 1.53780 * 113.61269 * 149.99746 * 6 5 2 9 9 C 1.53779 * 87.07818 * 140.06593 * 8 6 5 10 10 H 1.09001 * 113.61514 * 89.19942 * 9 8 6 11 11 C 1.53006 * 113.61334 * 220.01959 * 9 8 6 12 12 O 1.42895 * 109.47036 * 185.00147 * 11 9 8 13 13 C 1.35901 * 117.00221 * 180.02562 * 12 11 9 14 14 C 1.38705 * 120.06062 * 179.97438 * 13 12 11 15 15 C 1.50704 * 120.02596 * 0.02562 * 14 13 12 16 16 O 1.42902 * 109.46855 * 75.00477 * 15 14 13 17 17 Si 1.86302 * 109.47008 * 194.99805 * 15 14 13 18 18 C 1.38165 * 119.94474 * 179.97438 * 14 13 12 19 19 C 1.38248 * 120.05851 * 359.97438 * 18 14 13 20 20 C 1.38288 * 120.10577 * 359.97438 * 19 18 14 21 21 C 1.50702 * 119.96555 * 180.02562 * 20 19 18 22 22 F 1.39897 * 109.47452 * 359.97438 * 21 20 19 23 23 F 1.39897 * 109.47133 * 119.99756 * 21 20 19 24 24 F 1.39905 * 109.46487 * 239.99241 * 21 20 19 25 25 C 1.38117 * 120.05821 * 359.75703 * 20 19 18 26 26 C 1.53779 * 113.68758 * 247.53158 * 6 5 2 27 27 H 1.08991 * 109.47288 * 299.99939 * 1 2 3 28 28 H 1.09000 * 109.46950 * 60.00243 * 1 2 3 29 29 H 1.08998 * 109.46824 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46949 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47246 * 299.99575 * 3 2 1 32 32 H 1.09004 * 109.47009 * 60.00005 * 3 2 1 33 33 H 1.08999 * 109.46975 * 299.99489 * 4 2 1 34 34 H 1.09000 * 109.47505 * 59.99897 * 4 2 1 35 35 H 1.09005 * 109.47089 * 180.02562 * 4 2 1 36 36 H 1.08997 * 113.61807 * 25.51946 * 8 6 5 37 37 H 1.09003 * 113.69034 * 254.62121 * 8 6 5 38 38 H 1.09001 * 109.47002 * 304.99624 * 11 9 8 39 39 H 1.08993 * 109.46955 * 65.00062 * 11 9 8 40 40 H 1.08988 * 109.47095 * 315.00393 * 15 14 13 41 41 H 0.96699 * 113.99939 * 59.99867 * 16 15 14 42 42 H 1.48506 * 109.99716 * 58.68887 * 17 15 14 43 43 H 1.48502 * 109.99904 * 179.97438 * 17 15 14 44 44 H 1.08005 * 119.97146 * 179.97438 * 18 14 13 45 45 H 1.07995 * 119.94296 * 179.97438 * 19 18 14 46 46 H 1.08004 * 120.02598 * 180.27985 * 25 20 19 47 47 H 1.09008 * 113.61411 * 105.46137 * 26 6 5 48 48 H 1.08990 * 113.61765 * 334.55771 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5848 -2.0355 1.2645 7 1 1.2524 -2.4451 0.3107 8 6 2.5838 -2.9378 2.0079 9 6 1.3668 -3.6134 2.6614 10 1 0.9757 -4.4554 2.0902 11 6 1.5702 -3.9429 4.1417 12 8 0.4390 -4.6680 4.6280 13 6 0.4599 -5.0400 5.9350 14 6 -0.6056 -5.7460 6.4735 15 6 -1.7880 -6.1021 5.6096 16 8 -1.4339 -7.1772 4.7373 17 14 -3.2126 -6.6235 6.6910 18 6 -0.5816 -6.1235 7.8024 19 6 0.5034 -5.7985 8.5951 20 6 1.5674 -5.0956 8.0602 21 6 2.7489 -4.7435 8.9270 22 9 2.5390 -5.2303 10.2216 23 9 3.9067 -5.3199 8.3937 24 9 2.8975 -3.3531 8.9702 25 6 1.5507 -4.7208 6.7309 26 6 0.6069 -2.2980 2.4220 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 3.2162 -2.3999 2.7142 37 1 3.1498 -3.5986 1.3513 38 1 2.4683 -4.5494 4.2588 39 1 1.6798 -3.0181 4.7080 40 1 -2.0796 -5.2348 5.0175 41 1 -1.1631 -7.9837 5.1969 42 1 -3.5699 -5.5253 7.6248 43 1 -4.3852 -6.9767 5.8510 44 1 -1.4113 -6.6729 8.2223 45 1 0.5200 -6.0941 9.6337 46 1 2.3841 -4.1758 6.3126 47 1 -0.4240 -2.4420 2.0985 48 1 0.6988 -1.5853 3.2414 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15244776_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:48:30 Heat of formation + Delta-G solvation = -210.004243 kcal Electronic energy + Delta-G solvation = -33324.284027 eV Core-core repulsion = 28318.517824 eV Total energy + Delta-G solvation = -5005.766203 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.27286 -48.78381 -48.74965 -41.74031 -40.87979 -39.15973 -37.99725 -37.68889 -33.98309 -33.56123 -31.50569 -29.52199 -28.52967 -28.39370 -28.30008 -26.68257 -25.33042 -24.60794 -23.10128 -22.52432 -20.87736 -20.72302 -20.01447 -19.59973 -19.53106 -18.34389 -18.05925 -17.66243 -17.19305 -17.16482 -16.74831 -16.33498 -16.04528 -15.90286 -15.68928 -15.63968 -15.38582 -15.33280 -15.17379 -14.95534 -14.89415 -14.76470 -14.60250 -14.46772 -14.24675 -13.97887 -13.77796 -13.50411 -13.35878 -13.27652 -13.18322 -13.06305 -12.83374 -12.70386 -12.65257 -12.53211 -12.24311 -12.15426 -12.02313 -11.89495 -11.72802 -11.41166 -11.23927 -10.44499 -10.40977 -10.36983 -9.47641 -5.01699 -0.36933 0.12824 1.27609 1.51471 1.66088 1.95451 1.98992 2.22001 2.56760 2.70199 2.90899 3.29058 3.39716 3.45867 3.50411 3.58622 3.67774 3.71493 3.74179 3.87063 3.91496 3.94128 3.95483 4.05029 4.07952 4.16405 4.23239 4.33214 4.39692 4.48037 4.57976 4.58250 4.63751 4.71839 4.72706 4.74746 4.80838 4.85035 4.87682 4.89956 4.95702 4.99634 5.05332 5.08117 5.12125 5.26525 5.29140 5.33869 5.42971 6.17373 6.37374 6.79844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.380 6.380 6 C 0.060 3.940 7 H 0.100 0.900 8 C -0.122 4.122 9 C -0.101 4.101 10 H 0.106 0.894 11 C 0.065 3.935 12 O -0.309 6.309 13 C 0.141 3.859 14 C -0.130 4.130 15 C -0.069 4.069 16 O -0.550 6.550 17 Si 0.788 3.212 18 C -0.069 4.069 19 C -0.105 4.105 20 C -0.147 4.147 21 C 0.509 3.491 22 F -0.173 7.173 23 F -0.180 7.180 24 F -0.183 7.183 25 C -0.170 4.170 26 C -0.149 4.149 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.394 0.606 42 H -0.281 1.281 43 H -0.299 1.299 44 H 0.178 0.822 45 H 0.166 0.834 46 H 0.144 0.856 47 H 0.069 0.931 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -2.742 -0.673 3.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.300 6.300 6 C 0.003 3.997 7 H 0.118 0.882 8 C -0.159 4.159 9 C -0.120 4.120 10 H 0.124 0.876 11 C -0.010 4.010 12 O -0.223 6.223 13 C 0.095 3.905 14 C -0.132 4.132 15 C -0.178 4.178 16 O -0.358 6.358 17 Si 0.692 3.308 18 C -0.086 4.086 19 C -0.123 4.123 20 C -0.148 4.148 21 C 0.455 3.545 22 F -0.154 7.154 23 F -0.162 7.162 24 F -0.164 7.164 25 C -0.189 4.189 26 C -0.186 4.186 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.244 0.756 42 H -0.208 1.208 43 H -0.227 1.227 44 H 0.195 0.805 45 H 0.183 0.817 46 H 0.161 0.839 47 H 0.088 0.912 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.194 -2.052 -0.893 3.134 hybrid contribution 0.743 0.844 -0.365 1.182 sum -1.451 -1.208 -1.258 2.269 Atomic orbital electron populations 1.22445 0.95136 1.02596 1.02960 1.21679 0.93565 0.93446 0.85380 1.21796 1.01738 0.93190 1.02937 1.22448 1.02015 1.01088 0.97856 1.88012 1.74179 1.24062 1.43744 1.23648 0.95767 0.82422 0.97884 0.88215 1.23203 0.96152 0.97144 0.99448 1.22245 0.98550 0.97713 0.93461 0.87571 1.23011 0.87546 0.95573 0.94836 1.86166 1.43943 1.70115 1.22028 1.18781 0.93568 0.94411 0.83751 1.20191 0.96405 1.00930 0.95633 1.25191 1.01594 0.92930 0.98092 1.86528 1.89486 1.24143 1.35631 0.93981 0.73806 0.85355 0.77642 1.21145 0.98559 0.97934 0.90946 1.21204 0.91803 0.97019 1.02241 1.19822 0.95588 1.05152 0.94280 1.18355 0.83052 0.74366 0.78757 1.93182 1.94756 1.87742 1.39747 1.93223 1.52363 1.84483 1.86091 1.93223 1.96191 1.30516 1.96462 1.21043 0.99825 1.04556 0.93510 1.23589 0.99119 0.96477 0.99456 0.92543 0.90533 0.92212 0.92181 0.89721 0.92476 0.91877 0.90398 0.92048 0.89128 0.89269 0.90577 0.91389 0.88516 0.75600 1.20780 1.22717 0.80479 0.81689 0.83863 0.91181 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.05 8.38 71.98 0.60 0.65 16 2 C 0.10 0.10 1.11 -10.79 -0.01 0.09 16 3 C -0.14 -0.03 8.84 71.98 0.64 0.61 16 4 C -0.18 0.22 8.38 71.98 0.60 0.83 16 5 O -0.38 -1.63 10.00 -148.98 -1.49 -3.12 16 6 C 0.06 0.04 2.82 31.12 0.09 0.12 16 7 H 0.10 -0.12 5.54 -2.39 -0.01 -0.14 16 8 C -0.12 0.16 7.47 31.12 0.23 0.39 16 9 C -0.10 0.07 4.01 -10.27 -0.04 0.02 16 10 H 0.11 -0.05 8.14 -2.39 -0.02 -0.06 16 11 C 0.06 0.01 4.58 71.98 0.33 0.34 16 12 O -0.31 -1.28 9.47 -92.44 -0.88 -2.16 16 13 C 0.14 0.40 6.66 22.51 0.15 0.55 16 14 C -0.13 0.03 5.27 -19.77 -0.10 -0.07 16 15 C -0.07 0.02 2.38 71.24 0.17 0.19 16 16 O -0.55 -0.30 12.88 -148.98 -1.92 -2.22 16 17 Si 0.79 -3.06 29.92 68.60 2.05 -1.01 16 18 C -0.07 0.32 8.66 22.25 0.19 0.51 16 19 C -0.10 0.30 9.43 22.28 0.21 0.51 16 20 C -0.15 -0.17 5.37 -19.88 -0.11 -0.27 16 21 C 0.51 1.48 3.32 71.24 0.24 1.71 16 22 F -0.17 -0.43 15.97 44.97 0.72 0.29 16 23 F -0.18 -0.82 17.23 44.97 0.77 -0.04 16 24 F -0.18 -0.94 17.24 44.97 0.78 -0.16 16 25 C -0.17 -0.32 8.59 22.37 0.19 -0.13 16 26 C -0.15 -0.15 7.47 31.12 0.23 0.09 16 27 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.06 -0.03 7.02 -2.39 -0.02 -0.05 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 32 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.06 -0.13 6.24 -2.39 -0.01 -0.14 16 34 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.09 -0.04 8.10 -2.39 -0.02 -0.06 16 37 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.08 -0.13 7.65 -2.39 -0.02 -0.15 16 39 H 0.07 -0.02 7.38 -2.39 -0.02 -0.04 16 40 H 0.10 0.33 7.83 -2.39 -0.02 0.31 16 41 H 0.39 -3.32 8.70 -74.06 -0.64 -3.97 16 42 H -0.28 -0.19 7.11 99.48 0.71 0.51 16 43 H -0.30 -1.24 7.11 99.48 0.71 -0.53 16 44 H 0.18 -2.07 5.13 -2.91 -0.01 -2.08 16 45 H 0.17 -1.14 7.15 -2.91 -0.02 -1.16 16 46 H 0.14 0.03 6.30 -2.91 -0.02 0.01 16 47 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 48 H 0.08 0.23 7.89 -2.39 -0.02 0.21 16 Total: 0.00 -14.50 396.01 4.03 -10.47 By element: Atomic # 1 Polarization: -8.55 SS G_CDS: 0.38 Total: -8.17 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 3.61 Total: 6.13 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -4.28 Total: -7.50 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 2.27 Total: 0.08 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.05 Total: -1.01 kcal Total: -14.50 4.03 -10.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15244776_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.533 kcal (2) G-P(sol) polarization free energy of solvation -14.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds