Wall clock time and date at job start Tue Mar 9 2021 16:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46989 * 2 1 4 4 C 1.53006 * 109.47202 * 240.00220 * 2 1 3 5 5 O 1.45198 * 109.47722 * 120.00476 * 2 1 3 6 6 C 1.34634 * 117.00336 * 59.99556 * 5 2 1 7 7 O 1.21514 * 119.99646 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00448 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00278 * 180.02562 * 8 6 5 10 10 H 1.08999 * 112.90606 * 336.24903 * 9 8 6 11 11 C 1.53786 * 113.61460 * 107.49964 * 9 8 6 12 12 C 1.53772 * 87.08124 * 139.98232 * 11 9 8 13 13 H 1.08999 * 113.69598 * 89.12961 * 12 11 9 14 14 C 1.53002 * 113.61511 * 220.01798 * 12 11 9 15 15 O 1.42894 * 109.47167 * 272.49946 * 14 12 11 16 16 C 1.35902 * 117.00117 * 179.97438 * 15 14 12 17 17 C 1.38714 * 120.05786 * 179.97438 * 16 15 14 18 18 C 1.50699 * 120.02748 * 359.95838 * 17 16 15 19 19 O 1.42905 * 109.46972 * 285.00031 * 18 17 16 20 20 Si 1.86301 * 109.47146 * 164.99940 * 18 17 16 21 21 C 1.38166 * 119.94415 * 180.23455 * 17 16 15 22 22 C 1.38245 * 120.05451 * 359.46790 * 21 17 16 23 23 C 1.38290 * 120.11204 * 0.55824 * 22 21 17 24 24 C 1.50698 * 119.97246 * 179.72244 * 23 22 21 25 25 F 1.39896 * 109.47162 * 269.97474 * 24 23 22 26 26 F 1.39895 * 109.47124 * 29.97618 * 24 23 22 27 27 F 1.39899 * 109.47215 * 149.97478 * 24 23 22 28 28 C 1.38117 * 120.05544 * 359.69883 * 23 22 21 29 29 C 1.53776 * 113.61479 * 204.99501 * 9 8 6 30 30 H 1.08996 * 109.46791 * 299.99383 * 1 2 3 31 31 H 1.08996 * 109.47416 * 59.99760 * 1 2 3 32 32 H 1.09004 * 109.46635 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47053 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46936 * 300.00074 * 3 2 1 35 35 H 1.08996 * 109.46850 * 60.00653 * 3 2 1 36 36 H 1.09000 * 109.47281 * 299.99966 * 4 2 1 37 37 H 1.09004 * 109.46589 * 59.99817 * 4 2 1 38 38 H 1.08994 * 109.47153 * 179.97438 * 4 2 1 39 39 H 0.97005 * 119.99906 * 359.97438 * 8 6 5 40 40 H 1.09000 * 113.61384 * 25.42907 * 11 9 8 41 41 H 1.09002 * 113.61334 * 254.53566 * 11 9 8 42 42 H 1.08999 * 109.47415 * 152.49643 * 14 12 11 43 43 H 1.09008 * 109.46883 * 32.49853 * 14 12 11 44 44 H 1.09001 * 109.47358 * 44.99393 * 18 17 16 45 45 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 46 46 H 1.48497 * 109.99842 * 59.99749 * 20 18 17 47 47 H 1.48498 * 109.99736 * 181.31738 * 20 18 17 48 48 H 1.08000 * 119.97566 * 179.74673 * 21 17 16 49 49 H 1.07998 * 119.94717 * 180.25283 * 22 21 17 50 50 H 1.08005 * 120.02924 * 180.02562 * 28 23 22 51 51 H 1.09006 * 113.61533 * 105.46955 * 29 9 8 52 52 H 1.09005 * 113.61850 * 334.56615 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0674 -2.6655 2.4169 9 6 1.6743 -4.0670 2.5829 10 1 0.7609 -4.3181 2.0437 11 6 2.8231 -5.0614 2.3452 12 6 2.2743 -5.8597 3.5394 13 1 1.5250 -6.6015 3.2632 14 6 3.3648 -6.4276 4.4501 15 8 3.7760 -7.7057 3.9609 16 6 4.7461 -8.3511 4.6604 17 6 5.1927 -9.5960 4.2422 18 6 4.6019 -10.2350 3.0119 19 8 3.2972 -10.7337 3.3140 20 14 5.6915 -11.6411 2.4582 21 6 6.1756 -10.2523 4.9579 22 6 6.7217 -9.6643 6.0836 23 6 6.2779 -8.4235 6.5029 24 6 6.8709 -7.7883 7.7341 25 9 6.1327 -8.1723 8.8586 26 9 8.1975 -8.2071 7.8819 27 9 6.8332 -6.3958 7.6046 28 6 5.2917 -7.7658 5.7940 29 6 1.6747 -4.5377 4.0468 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1392 38 1 3.1299 -0.7208 -1.2495 39 1 2.6272 -2.2366 3.0831 40 1 3.8115 -4.6368 2.5209 41 1 2.7520 -5.5918 1.3956 42 1 2.9740 -6.5344 5.4620 43 1 4.2189 -5.7504 4.4600 44 1 4.5321 -9.4940 2.2155 45 1 2.8558 -11.1588 2.5660 46 1 5.7946 -12.6581 3.5353 47 1 5.1366 -12.2592 1.2273 48 1 6.5209 -11.2233 4.6351 49 1 7.4929 -10.1770 6.6394 50 1 4.9457 -6.7965 6.1217 51 1 0.6764 -4.6454 4.4712 52 1 2.3492 -3.9700 4.6879 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15244776_15734236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 16:48:38 Heat of formation + Delta-G solvation = -240.723044 kcal Electronic energy + Delta-G solvation = -38845.490018 eV Core-core repulsion = 33170.519885 eV Total energy + Delta-G solvation = -5674.970133 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.169 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -51.24766 -48.75760 -48.72121 -41.95605 -41.61720 -40.38123 -38.75195 -37.85034 -37.78906 -35.42975 -34.28726 -33.69944 -31.48072 -29.38894 -28.54353 -28.39025 -28.32034 -26.76202 -25.31450 -25.08730 -23.71276 -22.64913 -22.15409 -21.41816 -20.58388 -20.01809 -19.57564 -19.51122 -19.11762 -18.59120 -18.07371 -17.67546 -17.29623 -17.21108 -17.09435 -16.98678 -16.56268 -16.16150 -15.68672 -15.64700 -15.54315 -15.52235 -15.39662 -15.30499 -15.14304 -14.87854 -14.86620 -14.57801 -14.47804 -14.30570 -14.25065 -13.95079 -13.59809 -13.49090 -13.38436 -13.25357 -13.11276 -13.01303 -12.95569 -12.88838 -12.88020 -12.56374 -12.52080 -12.28592 -12.10370 -11.99037 -11.86821 -11.73146 -11.41616 -11.32923 -11.12668 -10.47254 -10.36782 -10.17651 -9.44358 -4.92777 -0.35730 0.14812 1.14876 1.26863 1.53381 1.59271 1.71104 1.91665 2.02051 2.21018 2.58656 2.92854 3.12969 3.29145 3.35728 3.37445 3.47065 3.58685 3.71726 3.72244 3.73657 3.78320 3.81774 3.92443 3.92931 4.00046 4.18319 4.18727 4.23640 4.36990 4.42999 4.49471 4.58858 4.59122 4.62449 4.68729 4.74395 4.76779 4.77879 4.83960 4.85460 4.85674 4.93621 4.99219 5.01285 5.06119 5.09829 5.17268 5.24908 5.30016 5.41003 5.48068 5.57890 6.21530 6.38171 6.58089 7.32094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.689 5.689 9 C 0.134 3.866 10 H 0.104 0.896 11 C -0.143 4.143 12 C -0.099 4.099 13 H 0.102 0.898 14 C 0.061 3.939 15 O -0.308 6.308 16 C 0.146 3.854 17 C -0.089 4.089 18 C -0.081 4.081 19 O -0.553 6.553 20 Si 0.768 3.232 21 C -0.081 4.081 22 C -0.105 4.105 23 C -0.146 4.146 24 C 0.511 3.489 25 F -0.181 7.181 26 F -0.175 7.175 27 F -0.178 7.178 28 C -0.167 4.167 29 C -0.121 4.121 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.393 0.607 46 H -0.282 1.282 47 H -0.288 1.288 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.155 0.845 51 H 0.091 0.909 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 2.004 -1.137 3.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.348 5.348 9 C 0.031 3.969 10 H 0.122 0.878 11 C -0.182 4.182 12 C -0.118 4.118 13 H 0.120 0.880 14 C -0.014 4.014 15 O -0.221 6.221 16 C 0.100 3.900 17 C -0.090 4.090 18 C -0.189 4.189 19 O -0.363 6.363 20 Si 0.672 3.328 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.148 4.148 24 C 0.456 3.544 25 F -0.163 7.163 26 F -0.156 7.156 27 F -0.159 7.159 28 C -0.186 4.186 29 C -0.159 4.159 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.244 0.756 46 H -0.209 1.209 47 H -0.215 1.215 48 H 0.178 0.822 49 H 0.176 0.824 50 H 0.173 0.827 51 H 0.110 0.890 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.141 1.216 -1.325 2.796 hybrid contribution -1.081 0.172 0.365 1.154 sum 1.059 1.388 -0.961 1.993 Atomic orbital electron populations 1.22474 0.94068 1.03676 1.03521 1.22346 0.94439 0.92586 0.81524 1.21894 1.02471 0.90877 1.04251 1.22474 1.01642 1.02238 0.97379 1.86311 1.71529 1.23365 1.47264 1.18441 0.78563 0.80694 0.82669 1.90904 1.42382 1.71060 1.44267 1.44760 1.54816 1.12245 1.23015 1.22544 0.98842 0.77148 0.98412 0.87831 1.23599 0.99169 0.96556 0.98885 1.22235 0.97357 0.96216 0.95994 0.87965 1.23103 0.97890 0.81955 0.98415 1.86148 1.51200 1.33524 1.51244 1.18681 0.88889 0.91934 0.90513 1.19120 0.98429 0.92911 0.98520 1.24929 0.90207 1.06454 0.97274 1.86555 1.29090 1.78691 1.41917 0.94123 0.86365 0.75895 0.76408 1.21150 0.94886 1.00056 0.93724 1.21047 1.00635 0.93414 0.97229 1.19817 1.01047 0.98073 0.95864 1.18300 0.76059 0.76254 0.83740 1.93234 1.77054 1.90952 1.55015 1.93206 1.36326 1.89866 1.96231 1.93192 1.96214 1.30556 1.95961 1.21125 0.98830 1.02318 0.96297 1.23362 1.03409 0.94182 0.94907 0.91920 0.89487 0.91811 0.91161 0.88344 0.91155 0.91813 0.89496 0.91928 0.74466 0.88496 0.91569 0.90633 0.90043 0.89582 0.75631 1.20928 1.21455 0.82220 0.82362 0.82727 0.88994 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 2 C 0.13 0.36 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 5 O -0.37 -1.90 9.94 -55.43 -0.55 -2.45 16 6 C 0.64 3.98 8.06 129.79 1.05 5.02 16 7 O -0.60 -7.02 11.48 19.80 0.23 -6.79 16 8 N -0.69 0.53 5.36 -567.62 -3.04 -2.52 16 9 C 0.13 -0.31 4.24 45.52 0.19 -0.12 16 10 H 0.10 0.18 7.47 -2.39 -0.02 0.17 16 11 C -0.14 0.48 7.43 31.12 0.23 0.71 16 12 C -0.10 0.51 4.01 -10.27 -0.04 0.47 16 13 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 14 C 0.06 -0.27 4.58 71.98 0.33 0.06 16 15 O -0.31 -0.43 9.47 -92.44 -0.88 -1.31 16 16 C 0.15 0.30 6.66 22.51 0.15 0.45 16 17 C -0.09 -0.13 5.30 -19.77 -0.10 -0.24 16 18 C -0.08 0.03 2.37 71.24 0.17 0.20 16 19 O -0.55 -1.42 12.86 -148.98 -1.92 -3.34 16 20 Si 0.77 -2.59 30.21 68.60 2.07 -0.52 16 21 C -0.08 0.07 8.66 22.25 0.19 0.26 16 22 C -0.11 0.08 9.40 22.28 0.21 0.29 16 23 C -0.15 -0.17 5.45 -19.88 -0.11 -0.28 16 24 C 0.51 1.18 3.36 71.24 0.24 1.42 16 25 F -0.18 -0.82 17.30 44.97 0.78 -0.04 16 26 F -0.17 -0.49 16.46 44.97 0.74 0.25 16 27 F -0.18 -0.46 16.46 44.97 0.74 0.28 16 28 C -0.17 -0.08 8.39 22.37 0.19 0.10 16 29 C -0.12 0.91 7.39 31.12 0.23 1.14 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 33 H 0.07 -0.18 8.14 -2.39 -0.02 -0.19 16 34 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 37 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.42 -2.39 8.84 -92.70 -0.82 -3.21 16 40 H 0.10 -0.46 7.90 -2.39 -0.02 -0.48 16 41 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.08 -0.43 7.66 -2.39 -0.02 -0.45 16 43 H 0.08 -0.58 7.36 -2.38 -0.02 -0.59 16 44 H 0.09 -0.17 7.83 -2.39 -0.02 -0.19 16 45 H 0.39 -1.97 8.74 -74.06 -0.65 -2.61 16 46 H -0.28 -0.45 6.74 99.48 0.67 0.22 16 47 H -0.29 -0.40 7.11 99.48 0.71 0.30 16 48 H 0.16 -0.72 4.90 -2.91 -0.01 -0.73 16 49 H 0.16 -0.71 7.60 -2.91 -0.02 -0.73 16 50 H 0.16 -0.46 5.85 -2.91 -0.02 -0.48 16 51 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 52 H 0.11 -1.24 8.08 -2.38 -0.02 -1.26 16 Total: 0.00 -18.93 430.79 2.45 -16.47 By element: Atomic # 1 Polarization: -10.41 SS G_CDS: -0.48 Total: -10.89 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 4.75 Total: 10.84 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -3.04 Total: -2.52 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -3.11 Total: -13.89 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 2.26 Total: 0.49 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.07 Total: -0.52 kcal Total: -18.93 2.45 -16.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15244776_15734236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.249 kcal (2) G-P(sol) polarization free energy of solvation -18.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds