Wall clock time and date at job start Tue Mar 9 2021 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.52999 * 109.47263 * 239.99673 * 2 1 3 5 5 O 1.42909 * 109.46736 * 119.99707 * 2 1 3 6 6 C 1.42897 * 113.99842 * 60.00540 * 5 2 1 7 7 H 1.09004 * 112.84873 * 341.19132 * 6 5 2 8 8 C 1.53779 * 113.61618 * 112.50069 * 6 5 2 9 9 C 1.53780 * 87.08082 * 139.97776 * 8 6 5 10 10 H 1.09004 * 113.69220 * 89.12422 * 9 8 6 11 11 C 1.52998 * 113.61445 * 220.01818 * 9 8 6 12 12 O 1.42902 * 109.47338 * 272.49642 * 11 9 8 13 13 C 1.35899 * 116.99868 * 179.97438 * 12 11 9 14 14 C 1.38711 * 120.05047 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.03043 * 0.04996 * 14 13 12 16 16 O 1.42893 * 109.47393 * 74.97594 * 15 14 13 17 17 Si 1.86310 * 109.47193 * 194.97564 * 15 14 13 18 18 C 1.38165 * 119.94450 * 180.02562 * 14 13 12 19 19 C 1.38244 * 120.05319 * 359.97438 * 18 14 13 20 20 C 1.38288 * 120.11305 * 0.02562 * 19 18 14 21 21 N 1.48007 * 119.97495 * 180.02562 * 20 19 18 22 22 O 1.21793 * 120.00219 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99713 * 359.96719 * 21 20 19 24 24 C 1.38123 * 120.05386 * 359.97438 * 20 19 18 25 25 C 1.53780 * 87.08381 * 334.56822 * 9 8 6 26 26 H 1.09005 * 109.47983 * 300.00315 * 1 2 3 27 27 H 1.09005 * 109.47512 * 60.00605 * 1 2 3 28 28 H 1.09003 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47209 * 299.99735 * 3 2 1 31 31 H 1.09000 * 109.47265 * 59.99737 * 3 2 1 32 32 H 1.08999 * 109.46951 * 299.99897 * 4 2 1 33 33 H 1.08998 * 109.46957 * 60.00321 * 4 2 1 34 34 H 1.09002 * 109.46989 * 180.02562 * 4 2 1 35 35 H 1.08999 * 113.61455 * 25.43024 * 8 6 5 36 36 H 1.08998 * 113.61321 * 254.52517 * 8 6 5 37 37 H 1.09000 * 109.47222 * 152.49876 * 11 9 8 38 38 H 1.08998 * 109.47006 * 32.50311 * 11 9 8 39 39 H 1.09002 * 109.47053 * 314.97319 * 15 14 13 40 40 H 0.96700 * 114.00126 * 59.99713 * 16 15 14 41 41 H 1.48496 * 109.99715 * 179.97438 * 17 15 14 42 42 H 1.48500 * 109.99641 * 301.31930 * 17 15 14 43 43 H 1.08002 * 119.97562 * 179.72226 * 18 14 13 44 44 H 1.08004 * 119.94705 * 179.97438 * 19 18 14 45 45 H 1.08001 * 120.02753 * 180.02562 * 24 20 19 46 46 H 1.09004 * 113.61983 * 139.97988 * 25 9 8 47 47 H 1.09000 * 113.61340 * 270.88340 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 0.7235 -2.2582 0.6344 8 6 2.7333 -3.0478 1.1215 9 6 2.0561 -3.8556 2.2411 10 1 1.3243 -4.5778 1.8790 11 6 3.0418 -4.4601 3.2430 12 8 3.4762 -5.7375 2.7724 13 6 4.3615 -6.4135 3.5510 14 6 4.8256 -7.6590 3.1544 15 6 4.3494 -8.2638 1.8589 16 8 4.9879 -7.6058 0.7629 17 14 4.7743 -10.0776 1.8270 18 6 5.7252 -8.3446 3.9480 19 6 6.1632 -7.7898 5.1361 20 6 5.7020 -6.5482 5.5337 21 7 6.1734 -5.9569 6.8060 22 8 5.7679 -4.8632 7.1564 23 8 6.9667 -6.5642 7.5026 24 6 4.8026 -5.8589 4.7438 25 6 1.4331 -2.5311 2.7125 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.7071 -2.6456 1.4010 36 1 2.7462 -3.5605 0.1597 37 1 2.5518 -4.5765 4.2097 38 1 3.9026 -3.7999 3.3492 39 1 3.2693 -8.1422 1.7764 40 1 5.9525 -7.6731 0.7717 41 1 4.3093 -10.6858 0.5546 42 1 6.2412 -10.2581 1.9707 43 1 6.0834 -9.3164 3.6419 44 1 6.8661 -8.3274 5.7553 45 1 4.4431 -4.8891 5.0545 46 1 0.3962 -2.6265 3.0351 47 1 2.0513 -1.9876 3.4270 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16525086_14598384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:37:04 Heat of formation + Delta-G solvation = -63.389886 kcal Electronic energy + Delta-G solvation = -29805.524442 eV Core-core repulsion = 25538.999024 eV Total energy + Delta-G solvation = -4266.525418 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.19690 -41.85530 -40.93333 -39.31185 -38.12180 -37.92217 -37.51003 -33.99504 -33.64522 -31.84720 -29.66854 -28.82944 -28.44727 -28.35479 -26.73480 -25.68244 -24.82811 -23.33128 -22.84876 -21.03864 -20.90773 -20.47994 -19.68327 -18.77644 -18.50220 -18.25206 -17.74705 -17.50055 -17.34491 -16.84293 -16.61334 -16.10654 -15.95858 -15.78966 -15.71499 -15.21635 -14.69347 -14.56739 -14.32146 -14.05100 -13.88891 -13.54995 -13.46073 -13.37499 -13.19250 -13.09186 -12.87729 -12.72879 -12.71731 -12.59981 -12.49929 -12.30743 -12.14494 -12.07102 -12.04650 -11.93971 -11.79887 -11.48497 -11.29240 -10.87721 -10.77573 -10.41107 -9.81393 -5.16498 -1.33005 -0.27993 0.23403 0.33243 1.01816 1.35156 1.68873 1.77145 1.96533 2.65799 3.06483 3.10335 3.26909 3.30313 3.36777 3.43249 3.49503 3.60571 3.66055 3.82054 3.84713 3.89454 3.92698 3.98040 4.03199 4.06280 4.16552 4.27434 4.37611 4.43648 4.51104 4.51475 4.58444 4.65519 4.68617 4.69015 4.71108 4.75622 4.83442 4.86126 4.89536 4.93314 5.04025 5.06584 5.21584 5.25366 5.30421 5.34941 5.89762 6.20638 6.35405 6.64549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.361 6.361 6 C 0.062 3.938 7 H 0.093 0.907 8 C -0.147 4.147 9 C -0.108 4.108 10 H 0.106 0.894 11 C 0.063 3.937 12 O -0.288 6.288 13 C 0.164 3.836 14 C -0.102 4.102 15 C -0.070 4.070 16 O -0.517 6.517 17 Si 0.691 3.309 18 C -0.083 4.083 19 C -0.087 4.087 20 C 0.003 3.997 21 N 0.024 4.976 22 O -0.155 6.155 23 O -0.148 6.148 24 C -0.154 4.154 25 C -0.127 4.127 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.375 0.625 41 H -0.250 1.250 42 H -0.255 1.255 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.079 0.921 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -2.264 -3.080 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.280 6.280 6 C 0.004 3.996 7 H 0.111 0.889 8 C -0.185 4.185 9 C -0.126 4.126 10 H 0.124 0.876 11 C -0.011 4.011 12 O -0.200 6.200 13 C 0.116 3.884 14 C -0.104 4.104 15 C -0.179 4.179 16 O -0.323 6.323 17 Si 0.591 3.409 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.080 4.080 21 N 0.545 4.455 22 O -0.372 6.372 23 O -0.366 6.366 24 C -0.174 4.174 25 C -0.164 4.164 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.222 0.778 41 H -0.175 1.175 42 H -0.180 1.180 43 H 0.175 0.825 44 H 0.178 0.822 45 H 0.178 0.822 46 H 0.098 0.902 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.593 -2.975 -4.338 6.370 hybrid contribution 0.832 0.988 -0.041 1.293 sum -2.760 -1.987 -4.378 5.544 Atomic orbital electron populations 1.22473 0.95612 1.02441 1.03129 1.21545 0.93121 0.93267 0.85480 1.21772 1.02037 0.93185 1.02648 1.22472 1.02323 1.00759 0.97844 1.88040 1.73742 1.23293 1.42921 1.23556 0.97019 0.81950 0.97046 0.88930 1.23617 0.99418 0.96422 0.99044 1.22303 0.97838 0.95944 0.96541 0.87569 1.23057 0.97958 0.81911 0.98224 1.86230 1.56117 1.32167 1.45488 1.18444 0.90094 0.91301 0.88520 1.20173 0.98248 0.93133 0.98823 1.25030 1.02226 1.07605 0.83070 1.86700 1.24213 1.75969 1.45415 0.94966 0.82781 0.75420 0.87727 1.21070 0.95703 1.00411 0.92935 1.20953 0.99825 0.92744 0.97125 1.20861 1.03095 0.96671 0.87373 1.43601 0.99319 1.00543 1.02040 1.94569 1.59811 1.06710 1.76061 1.94571 1.28298 1.62156 1.51545 1.21105 0.99104 1.02648 0.94539 1.23248 1.01937 0.94001 0.97259 0.91557 0.91325 0.92243 0.91759 0.91035 0.91721 0.92297 0.91497 0.91682 0.89118 0.90793 0.91058 0.91098 0.85658 0.77783 1.17460 1.17964 0.82481 0.82210 0.82250 0.90222 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.16 8.38 37.16 0.31 0.47 16 2 C 0.10 0.00 1.11 -90.62 -0.10 -0.10 16 3 C -0.14 0.04 8.84 37.16 0.33 0.37 16 4 C -0.18 0.10 8.38 37.16 0.31 0.41 16 5 O -0.36 -0.51 10.00 -35.23 -0.35 -0.87 16 6 C 0.06 -0.03 2.82 -25.92 -0.07 -0.10 16 7 H 0.09 -0.12 5.54 -51.93 -0.29 -0.41 16 8 C -0.15 0.08 7.46 -25.92 -0.19 -0.11 16 9 C -0.11 0.17 4.01 -89.81 -0.36 -0.19 16 10 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 11 C 0.06 -0.09 4.58 37.16 0.17 0.08 16 12 O -0.29 -0.04 9.47 -19.42 -0.18 -0.22 16 13 C 0.16 -0.02 6.66 -39.22 -0.26 -0.28 16 14 C -0.10 0.14 5.27 -104.48 -0.55 -0.41 16 15 C -0.07 0.12 2.38 36.00 0.09 0.20 16 16 O -0.52 0.00 12.88 -35.23 -0.45 -0.45 16 17 Si 0.69 -2.03 30.24 -169.99 -5.14 -7.17 16 18 C -0.08 0.20 8.66 -39.61 -0.34 -0.14 16 19 C -0.09 0.08 9.55 -39.56 -0.38 -0.30 16 20 C 0.00 0.00 6.85 -79.98 -0.55 -0.54 16 21 N 0.02 0.09 4.45 33.95 0.15 0.24 16 22 O -0.16 -0.77 18.45 -29.46 -0.54 -1.32 16 23 O -0.15 -0.69 18.45 -29.46 -0.54 -1.23 16 24 C -0.15 -0.05 8.54 -39.44 -0.34 -0.39 16 25 C -0.13 0.19 7.47 -25.92 -0.19 0.00 16 26 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.06 -0.08 6.24 -51.93 -0.32 -0.40 16 29 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 31 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.06 -0.04 7.02 -51.93 -0.36 -0.41 16 33 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.09 0.03 7.90 -51.93 -0.41 -0.38 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 37 H 0.07 -0.17 7.66 -51.93 -0.40 -0.57 16 38 H 0.07 -0.11 7.36 -51.93 -0.38 -0.49 16 39 H 0.13 -0.21 7.83 -51.93 -0.41 -0.62 16 40 H 0.37 -1.14 8.70 45.56 0.40 -0.74 16 41 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 42 H -0.25 0.46 6.69 56.52 0.38 0.84 16 43 H 0.16 -0.71 4.86 -52.49 -0.26 -0.97 16 44 H 0.16 -0.36 7.61 -52.48 -0.40 -0.76 16 45 H 0.16 -0.07 5.85 -52.49 -0.31 -0.37 16 46 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 47 H 0.09 -0.10 8.10 -51.93 -0.42 -0.52 16 LS Contribution 384.80 15.07 5.80 5.80 Total: 0.00 -6.34 384.80 -10.41 -16.74 By element: Atomic # 1 Polarization: -3.48 SS G_CDS: -7.01 Total: -10.49 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.13 Total: -1.04 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: 0.15 Total: 0.24 kcal Atomic # 8 Polarization: -2.01 SS G_CDS: -2.08 Total: -4.09 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: -5.14 Total: -7.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -6.34 -10.41 -16.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525086_14598384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.646 kcal (2) G-P(sol) polarization free energy of solvation -6.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds