Wall clock time and date at job start Tue Mar 9 2021 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.52999 * 109.47263 * 239.99673 * 2 1 3 5 5 O 1.42909 * 109.46736 * 119.99707 * 2 1 3 6 6 C 1.42897 * 113.99842 * 60.00540 * 5 2 1 7 7 H 1.09004 * 112.84873 * 341.19132 * 6 5 2 8 8 C 1.53779 * 113.61618 * 112.50069 * 6 5 2 9 9 C 1.53780 * 87.08082 * 139.97776 * 8 6 5 10 10 H 1.09004 * 113.69220 * 89.12422 * 9 8 6 11 11 C 1.52998 * 113.61445 * 220.01818 * 9 8 6 12 12 O 1.42902 * 109.47338 * 272.49642 * 11 9 8 13 13 C 1.35899 * 116.99868 * 179.97438 * 12 11 9 14 14 C 1.38711 * 120.05047 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.03043 * 0.04996 * 14 13 12 16 16 O 1.42893 * 109.47393 * 74.97594 * 15 14 13 17 17 Si 1.86310 * 109.47193 * 194.97564 * 15 14 13 18 18 C 1.38165 * 119.94450 * 180.02562 * 14 13 12 19 19 C 1.38244 * 120.05319 * 359.97438 * 18 14 13 20 20 C 1.38288 * 120.11305 * 0.02562 * 19 18 14 21 21 N 1.48007 * 119.97495 * 180.02562 * 20 19 18 22 22 O 1.21793 * 120.00219 * 179.97438 * 21 20 19 23 23 O 1.21799 * 119.99713 * 359.96719 * 21 20 19 24 24 C 1.38123 * 120.05386 * 359.97438 * 20 19 18 25 25 C 1.53780 * 87.08381 * 334.56822 * 9 8 6 26 26 H 1.09005 * 109.47983 * 300.00315 * 1 2 3 27 27 H 1.09005 * 109.47512 * 60.00605 * 1 2 3 28 28 H 1.09003 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47069 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47209 * 299.99735 * 3 2 1 31 31 H 1.09000 * 109.47265 * 59.99737 * 3 2 1 32 32 H 1.08999 * 109.46951 * 299.99897 * 4 2 1 33 33 H 1.08998 * 109.46957 * 60.00321 * 4 2 1 34 34 H 1.09002 * 109.46989 * 180.02562 * 4 2 1 35 35 H 1.08999 * 113.61455 * 25.43024 * 8 6 5 36 36 H 1.08998 * 113.61321 * 254.52517 * 8 6 5 37 37 H 1.09000 * 109.47222 * 152.49876 * 11 9 8 38 38 H 1.08998 * 109.47006 * 32.50311 * 11 9 8 39 39 H 1.09002 * 109.47053 * 314.97319 * 15 14 13 40 40 H 0.96700 * 114.00126 * 59.99713 * 16 15 14 41 41 H 1.48496 * 109.99715 * 179.97438 * 17 15 14 42 42 H 1.48500 * 109.99641 * 301.31930 * 17 15 14 43 43 H 1.08002 * 119.97562 * 179.72226 * 18 14 13 44 44 H 1.08004 * 119.94705 * 179.97438 * 19 18 14 45 45 H 1.08001 * 120.02753 * 180.02562 * 24 20 19 46 46 H 1.09004 * 113.61983 * 139.97988 * 25 9 8 47 47 H 1.09000 * 113.61340 * 270.88340 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0062 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 0.7235 -2.2582 0.6344 8 6 2.7333 -3.0478 1.1215 9 6 2.0561 -3.8556 2.2411 10 1 1.3243 -4.5778 1.8790 11 6 3.0418 -4.4601 3.2430 12 8 3.4762 -5.7375 2.7724 13 6 4.3615 -6.4135 3.5510 14 6 4.8256 -7.6590 3.1544 15 6 4.3494 -8.2638 1.8589 16 8 4.9879 -7.6058 0.7629 17 14 4.7743 -10.0776 1.8270 18 6 5.7252 -8.3446 3.9480 19 6 6.1632 -7.7898 5.1361 20 6 5.7020 -6.5482 5.5337 21 7 6.1734 -5.9569 6.8060 22 8 5.7679 -4.8632 7.1564 23 8 6.9667 -6.5642 7.5026 24 6 4.8026 -5.8589 4.7438 25 6 1.4331 -2.5311 2.7125 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.7071 -2.6456 1.4010 36 1 2.7462 -3.5605 0.1597 37 1 2.5518 -4.5765 4.2097 38 1 3.9026 -3.7999 3.3492 39 1 3.2693 -8.1422 1.7764 40 1 5.9525 -7.6731 0.7717 41 1 4.3093 -10.6858 0.5546 42 1 6.2412 -10.2581 1.9707 43 1 6.0834 -9.3164 3.6419 44 1 6.8661 -8.3274 5.7553 45 1 4.4431 -4.8891 5.0545 46 1 0.3962 -2.6265 3.0351 47 1 2.0513 -1.9876 3.4270 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16525086_14598384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:37:03 Heat of formation + Delta-G solvation = -57.528692 kcal Electronic energy + Delta-G solvation = -29805.270281 eV Core-core repulsion = 25538.999024 eV Total energy + Delta-G solvation = -4266.271257 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.39730 -41.83178 -40.89605 -39.26732 -38.07465 -37.87555 -37.77650 -33.98681 -33.63292 -31.79125 -29.62028 -28.89854 -28.38629 -28.31723 -26.67337 -25.72076 -24.76702 -23.29529 -22.83570 -21.07782 -20.88218 -20.45985 -19.89435 -18.74300 -18.72052 -18.23783 -17.71722 -17.44807 -17.28589 -16.78120 -16.54250 -16.04939 -15.90162 -15.70585 -15.62085 -15.13643 -14.64497 -14.52346 -14.27358 -14.00350 -13.81095 -13.49921 -13.40106 -13.32181 -13.14029 -13.05810 -12.85125 -12.80183 -12.68844 -12.67006 -12.60090 -12.40408 -12.29101 -12.19347 -12.00641 -11.83991 -11.73079 -11.42477 -11.24148 -10.79303 -10.68572 -10.39850 -9.77057 -4.92927 -1.46725 -0.20474 0.09067 0.20507 1.20323 1.55224 1.77057 1.94793 2.01988 2.70416 3.15334 3.20402 3.35474 3.41575 3.43404 3.50098 3.56682 3.68719 3.72182 3.87155 3.90439 3.95472 4.02663 4.05834 4.08622 4.15689 4.28258 4.36659 4.46943 4.53230 4.58607 4.58945 4.63962 4.73016 4.73558 4.75253 4.77992 4.81655 4.88238 4.90732 4.93968 4.97810 5.08572 5.11990 5.19326 5.27480 5.29815 5.35045 5.95270 6.33408 6.38489 6.43689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.102 0.898 8 C -0.148 4.148 9 C -0.099 4.099 10 H 0.113 0.887 11 C 0.061 3.939 12 O -0.297 6.297 13 C 0.155 3.845 14 C -0.095 4.095 15 C -0.082 4.082 16 O -0.540 6.540 17 Si 0.777 3.223 18 C -0.071 4.071 19 C -0.080 4.080 20 C -0.015 4.015 21 N 0.027 4.973 22 O -0.189 6.189 23 O -0.159 6.159 24 C -0.158 4.158 25 C -0.123 4.123 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.387 0.613 41 H -0.301 1.301 42 H -0.259 1.259 43 H 0.186 0.814 44 H 0.176 0.824 45 H 0.160 0.840 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -3.605 -3.578 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.119 0.881 8 C -0.186 4.186 9 C -0.117 4.117 10 H 0.131 0.869 11 C -0.013 4.013 12 O -0.210 6.210 13 C 0.107 3.893 14 C -0.096 4.096 15 C -0.190 4.190 16 O -0.348 6.348 17 Si 0.680 3.320 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.098 4.098 21 N 0.542 4.458 22 O -0.399 6.399 23 O -0.377 6.377 24 C -0.178 4.178 25 C -0.161 4.161 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.142 0.858 40 H 0.236 0.764 41 H -0.229 1.229 42 H -0.185 1.185 43 H 0.203 0.797 44 H 0.193 0.807 45 H 0.177 0.823 46 H 0.109 0.891 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.879 -4.255 -4.799 7.496 hybrid contribution 0.906 1.360 -0.013 1.634 sum -2.974 -2.895 -4.812 6.354 Atomic orbital electron populations 1.22447 0.94814 1.02822 1.03299 1.21673 0.93792 0.93274 0.85306 1.21798 1.01555 0.93307 1.03052 1.22444 1.01696 1.00967 0.98007 1.88017 1.74276 1.24194 1.43619 1.23680 0.97151 0.81206 0.97825 0.88072 1.23577 0.98988 0.96764 0.99275 1.22252 0.97642 0.95890 0.95944 0.86924 1.23122 0.98003 0.81477 0.98743 1.86215 1.56294 1.32630 1.45835 1.18583 0.90429 0.91863 0.88409 1.20364 0.97768 0.92585 0.98877 1.25341 1.02299 1.08924 0.82420 1.86669 1.25453 1.76625 1.46005 0.93994 0.80862 0.72181 0.84971 1.21319 0.94628 1.01064 0.91827 1.21244 0.99409 0.91746 0.97524 1.21007 1.04525 0.97797 0.86489 1.43952 0.98838 1.00255 1.02708 1.94556 1.60673 1.07667 1.77035 1.94539 1.28701 1.62042 1.52465 1.21130 0.99160 1.02805 0.94729 1.23218 1.02493 0.93740 0.96608 0.92072 0.90440 0.91757 0.92534 0.89732 0.92208 0.92110 0.90553 0.92625 0.90363 0.91114 0.90026 0.91408 0.85838 0.76422 1.22916 1.18467 0.79719 0.80674 0.82283 0.89076 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.33 8.38 71.98 0.60 0.93 16 2 C 0.10 0.06 1.11 -10.80 -0.01 0.04 16 3 C -0.14 0.00 8.84 71.98 0.64 0.63 16 4 C -0.17 0.13 8.38 71.98 0.60 0.73 16 5 O -0.38 -1.45 10.00 -148.98 -1.49 -2.94 16 6 C 0.06 -0.03 2.82 31.12 0.09 0.06 16 7 H 0.10 -0.26 5.54 -2.38 -0.01 -0.27 16 8 C -0.15 0.03 7.46 31.12 0.23 0.26 16 9 C -0.10 0.28 4.01 -10.27 -0.04 0.24 16 10 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 11 C 0.06 -0.13 4.58 71.98 0.33 0.20 16 12 O -0.30 -0.17 9.47 -92.41 -0.87 -1.05 16 13 C 0.15 -0.04 6.66 22.50 0.15 0.11 16 14 C -0.09 0.35 5.27 -19.77 -0.10 0.24 16 15 C -0.08 0.35 2.38 71.24 0.17 0.51 16 16 O -0.54 0.22 12.88 -148.98 -1.92 -1.69 16 17 Si 0.78 -5.73 30.24 68.60 2.07 -3.65 16 18 C -0.07 0.47 8.66 22.25 0.19 0.66 16 19 C -0.08 0.24 9.55 22.28 0.21 0.45 16 20 C -0.02 -0.04 6.85 36.36 0.25 0.21 16 21 N 0.03 0.24 4.45 -46.51 -0.21 0.03 16 22 O -0.19 -2.24 18.45 18.90 0.35 -1.89 16 23 O -0.16 -1.61 18.45 18.89 0.35 -1.27 16 24 C -0.16 -0.20 8.54 22.36 0.19 -0.01 16 25 C -0.12 0.32 7.47 31.12 0.23 0.55 16 26 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 27 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 28 H 0.06 -0.19 6.24 -2.39 -0.01 -0.20 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 -0.07 7.02 -2.39 -0.02 -0.09 16 33 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.08 0.18 7.90 -2.39 -0.02 0.16 16 36 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 -0.35 7.66 -2.39 -0.02 -0.37 16 38 H 0.07 -0.11 7.36 -2.39 -0.02 -0.13 16 39 H 0.12 -0.48 7.83 -2.39 -0.02 -0.50 16 40 H 0.39 -2.63 8.70 -74.06 -0.64 -3.27 16 41 H -0.30 -0.43 7.11 99.48 0.71 0.27 16 42 H -0.26 1.67 6.69 99.48 0.67 2.33 16 43 H 0.19 -2.27 4.86 -2.91 -0.01 -2.28 16 44 H 0.18 -1.08 7.61 -2.91 -0.02 -1.10 16 45 H 0.16 0.10 5.85 -2.91 -0.02 0.08 16 46 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 16 47 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 Total: 0.00 -16.11 384.80 2.36 -13.76 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: 0.34 Total: -7.13 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 3.73 Total: 5.84 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.21 Total: 0.03 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -3.59 Total: -8.84 kcal Atomic # 14 Polarization: -5.73 SS G_CDS: 2.07 Total: -3.65 kcal Total: -16.11 2.36 -13.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16525086_14598384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.771 kcal (2) G-P(sol) polarization free energy of solvation -16.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds