Wall clock time and date at job start Tue Mar 9 2021 17:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47412 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00702 * 2 1 3 5 5 C 1.53007 * 109.45319 * 179.97438 * 4 2 1 6 6 C 1.53094 * 109.41008 * 179.58603 * 5 4 2 7 7 C 1.52475 * 109.51422 * 59.18297 * 6 5 4 8 8 C 1.52480 * 110.72229 * 301.22557 * 7 6 5 9 9 C 1.52998 * 109.44004 * 59.90823 * 4 2 1 10 10 N 1.46830 * 110.54561 * 178.37307 * 7 6 5 11 11 C 1.34688 * 106.41762 * 241.22344 * 10 7 6 12 12 O 1.21530 * 123.78876 * 180.27463 * 11 10 7 13 13 N 1.33870 * 112.41796 * 0.44409 * 11 10 7 14 14 C 1.46500 * 124.19188 * 179.79775 * 13 11 10 15 15 C 1.50695 * 109.47198 * 269.69920 * 14 13 11 16 16 C 1.34520 * 125.79236 * 89.99931 * 15 14 13 17 17 C 1.41383 * 106.84084 * 179.97438 * 16 15 14 18 18 C 1.34511 * 106.84236 * 359.97438 * 17 16 15 19 19 C 1.50701 * 125.78940 * 180.02562 * 18 17 16 20 20 O 1.42896 * 109.47417 * 64.99898 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 184.99914 * 19 18 17 22 22 O 1.34301 * 108.41959 * 0.26530 * 18 17 16 23 23 C 1.34906 * 111.61304 * 359.52837 * 13 11 10 24 24 O 1.21237 * 127.25506 * 180.29336 * 23 13 11 25 25 H 1.09007 * 109.46686 * 299.99506 * 1 2 3 26 26 H 1.08997 * 109.47435 * 59.99043 * 1 2 3 27 27 H 1.09002 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46686 * 240.00494 * 2 1 3 29 29 H 1.09000 * 109.47220 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47602 * 300.00855 * 3 2 1 31 31 H 1.09007 * 109.46792 * 60.00558 * 3 2 1 32 32 H 1.08991 * 109.45131 * 299.95472 * 4 2 1 33 33 H 1.09009 * 109.48034 * 59.60699 * 5 4 2 34 34 H 1.08997 * 109.48534 * 299.57443 * 5 4 2 35 35 H 1.08997 * 109.46925 * 299.16066 * 6 5 4 36 36 H 1.09007 * 109.45809 * 179.18963 * 6 5 4 37 37 H 1.08990 * 109.46539 * 178.77419 * 8 7 6 38 38 H 1.08998 * 109.46573 * 298.75296 * 8 7 6 39 39 H 1.09002 * 109.47775 * 300.40037 * 9 4 2 40 40 H 1.09002 * 109.48264 * 60.42753 * 9 4 2 41 41 H 0.96995 * 126.79336 * 61.48115 * 10 7 6 42 42 H 1.09003 * 109.47602 * 149.69779 * 14 13 11 43 43 H 1.09004 * 109.47250 * 29.69399 * 14 13 11 44 44 H 1.07993 * 126.57449 * 359.97438 * 16 15 14 45 45 H 1.08001 * 126.57632 * 179.97438 * 17 16 15 46 46 H 1.09002 * 109.47060 * 304.99925 * 19 18 17 47 47 H 0.96708 * 114.00101 * 59.99427 * 20 19 18 48 48 H 1.48493 * 110.00101 * 179.97438 * 21 19 18 49 49 H 1.48502 * 109.99925 * 301.31801 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7217 1.2484 6 6 4.0793 -1.4347 2.5038 7 6 3.5539 -2.8659 2.5252 8 6 2.0293 -2.8813 2.5049 9 6 1.5277 -2.1631 1.2494 10 7 4.0608 -3.5833 3.7018 11 6 4.7841 -4.6187 3.2338 12 8 5.3468 -5.4267 3.9461 13 7 4.8166 -4.6555 1.8960 14 6 5.5319 -5.6696 1.1175 15 6 6.9380 -5.1981 0.8500 16 6 8.0067 -5.4255 1.6346 17 6 9.1137 -4.8083 1.0079 18 6 8.6554 -4.2412 -0.1224 19 6 9.4813 -3.4686 -1.1184 20 8 10.4356 -4.3420 -1.7254 21 14 8.3666 -2.7582 -2.4312 22 8 7.3359 -4.4758 -0.2101 23 6 4.1041 -3.6464 1.3537 24 8 3.9396 -3.4149 0.1751 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6772 -0.2070 2.1389 33 1 3.9338 0.3059 1.2411 34 1 3.9331 -1.2422 0.3622 35 1 3.7283 -0.9055 3.3897 36 1 5.1693 -1.4480 2.4969 37 1 1.6766 -3.9125 2.4987 38 1 1.6491 -2.3728 3.3909 39 1 0.4377 -2.1615 1.2429 40 1 1.8959 -2.6799 0.3631 41 1 3.9027 -3.3586 4.6320 42 1 5.0166 -5.8312 0.1707 43 1 5.5626 -6.6037 1.6785 44 1 8.0171 -5.9742 2.5647 45 1 10.1319 -4.7948 1.3678 46 1 10.0030 -2.6592 -0.6077 47 1 10.0412 -5.0874 -2.1988 48 1 9.1689 -1.9933 -3.4193 49 1 7.6258 -3.8494 -3.1135 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16621382_18345148.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:42:54 Heat of formation + Delta-G solvation = -59.478792 kcal Electronic energy + Delta-G solvation = -33077.608529 eV Core-core repulsion = 28780.745231 eV Total energy + Delta-G solvation = -4296.863298 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.06739 -43.60131 -40.35443 -39.22295 -38.20473 -37.48091 -36.61751 -34.45031 -34.01719 -32.22597 -32.07721 -29.63943 -29.23045 -27.97315 -25.85059 -25.17474 -23.57509 -23.42761 -23.03464 -22.67317 -21.36363 -20.80803 -20.36846 -19.25185 -18.89429 -18.12577 -17.89625 -17.45055 -17.20766 -16.70878 -16.60600 -16.35254 -16.07079 -15.70064 -15.60595 -15.19986 -14.85106 -14.67946 -14.57132 -14.51371 -14.46567 -14.21620 -14.01875 -13.91731 -13.52796 -13.50691 -13.18984 -13.03373 -12.97776 -12.80949 -12.71858 -12.21988 -12.19958 -12.10394 -12.05907 -11.86128 -11.39554 -11.18897 -11.08508 -11.03369 -11.01843 -10.83317 -10.76167 -10.38426 -9.67329 -5.01520 0.23695 0.51826 1.04183 1.13443 1.41168 1.55383 1.63525 1.80801 1.94780 2.08175 2.82226 3.16427 3.35375 3.42361 3.52922 3.66947 3.82358 3.92685 3.97021 4.01669 4.05216 4.16631 4.26619 4.32932 4.34667 4.36632 4.44271 4.46871 4.57586 4.60418 4.64135 4.71282 4.77449 4.83017 4.89182 4.89580 4.96671 5.00383 5.07445 5.09877 5.18051 5.20599 5.23964 5.32070 5.34465 5.44337 5.47342 5.61442 5.71267 5.76880 5.86319 5.95900 6.28331 6.30951 7.01737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.074 4.074 5 C -0.123 4.123 6 C -0.108 4.108 7 C 0.131 3.869 8 C -0.108 4.108 9 C -0.123 4.123 10 N -0.702 5.702 11 C 0.701 3.299 12 O -0.572 6.572 13 N -0.579 5.579 14 C 0.198 3.802 15 C -0.046 4.046 16 C -0.181 4.181 17 C -0.186 4.186 18 C -0.050 4.050 19 C -0.032 4.032 20 O -0.533 6.533 21 Si 0.760 3.240 22 O -0.172 6.172 23 C 0.527 3.473 24 O -0.464 6.464 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.452 0.548 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.154 0.846 47 H 0.390 0.610 48 H -0.274 1.274 49 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 4.169 2.644 6.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.092 4.092 5 C -0.161 4.161 6 C -0.146 4.146 7 C 0.041 3.959 8 C -0.146 4.146 9 C -0.161 4.161 10 N -0.366 5.366 11 C 0.402 3.598 12 O -0.447 6.447 13 N -0.326 5.326 14 C 0.077 3.923 15 C -0.097 4.097 16 C -0.201 4.201 17 C -0.205 4.205 18 C -0.100 4.100 19 C -0.142 4.142 20 O -0.342 6.342 21 Si 0.663 3.337 22 O -0.070 6.070 23 C 0.314 3.686 24 O -0.333 6.333 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.299 0.701 42 H 0.140 0.860 43 H 0.158 0.842 44 H 0.175 0.825 45 H 0.179 0.821 46 H 0.172 0.828 47 H 0.240 0.760 48 H -0.200 1.200 49 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -4.138 4.348 1.488 6.184 hybrid contribution 0.733 -1.498 0.154 1.675 sum -3.405 2.850 1.642 4.734 Atomic orbital electron populations 1.21903 0.95181 1.01863 1.01760 1.21090 0.95723 0.96199 0.97926 1.21901 1.01366 0.95678 1.01741 1.21144 0.94482 0.95060 0.98501 1.21777 0.95905 1.01335 0.97043 1.21696 1.00881 0.90410 1.01653 1.21220 0.97880 0.94437 0.82385 1.21703 0.88793 1.02556 1.01543 1.21773 1.01554 0.95679 0.97088 1.45567 1.53333 1.27875 1.09862 1.16042 0.79698 0.82554 0.81489 1.91011 1.50281 1.43666 1.59779 1.46656 1.48355 1.29637 1.07909 1.20072 0.83877 0.90135 0.98191 1.22712 0.97516 1.00590 0.88843 1.21935 0.91978 1.04383 1.01840 1.21847 1.01064 1.02033 0.95575 1.23102 0.81609 1.04976 1.00328 1.24469 0.95477 0.94487 0.99742 1.86631 1.34003 1.42031 1.71511 0.93577 0.78987 0.83523 0.77597 1.83942 1.24254 1.56984 1.41786 1.21185 0.76912 0.80054 0.90408 1.90778 1.57210 1.68571 1.16729 0.92174 0.93345 0.92352 0.92408 0.92106 0.93339 0.92213 0.89691 0.89699 0.91894 0.87216 0.91479 0.91079 0.87218 0.89918 0.92026 0.70087 0.85979 0.84189 0.82538 0.82107 0.82829 0.75988 1.20004 1.22123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 8.84 71.98 0.64 1.17 16 2 C -0.09 0.30 2.50 -10.79 -0.03 0.27 16 3 C -0.15 0.57 8.84 71.98 0.64 1.21 16 4 C -0.07 0.41 1.76 -10.79 -0.02 0.39 16 5 C -0.12 0.57 4.61 30.63 0.14 0.71 16 6 C -0.11 0.68 5.11 30.45 0.16 0.83 16 7 C 0.13 -0.57 1.01 2.59 0.00 -0.57 16 8 C -0.11 0.73 5.11 30.45 0.16 0.89 16 9 C -0.12 0.58 4.61 30.62 0.14 0.72 16 10 N -0.70 2.79 5.89 -442.70 -2.61 0.18 16 11 C 0.70 2.13 8.63 179.36 1.55 3.68 16 12 O -0.57 -5.54 17.48 -3.81 -0.07 -5.61 16 13 N -0.58 -1.17 2.59 -777.32 -2.02 -3.19 16 14 C 0.20 0.24 6.24 85.63 0.53 0.77 16 15 C -0.05 -0.22 6.90 24.83 0.17 -0.04 16 16 C -0.18 -0.92 10.81 22.19 0.24 -0.68 16 17 C -0.19 -0.84 10.81 22.19 0.24 -0.60 16 18 C -0.05 -0.20 6.20 24.83 0.15 -0.05 16 19 C -0.03 -0.03 2.99 71.24 0.21 0.19 16 20 O -0.53 -1.42 12.88 -148.98 -1.92 -3.34 16 21 Si 0.76 0.93 32.12 68.60 2.20 3.13 16 22 O -0.17 -1.04 9.06 -2.48 -0.02 -1.07 16 23 C 0.53 0.75 6.51 87.78 0.57 1.32 16 24 O -0.46 -2.51 13.79 -2.90 -0.04 -2.55 16 25 H 0.06 -0.27 8.14 -2.38 -0.02 -0.29 16 26 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.06 -0.22 6.42 -2.39 -0.02 -0.23 16 28 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 29 H 0.06 -0.26 6.42 -2.39 -0.02 -0.27 16 30 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.08 -0.51 6.41 -2.38 -0.02 -0.53 16 34 H 0.06 0.01 6.08 -2.39 -0.01 -0.01 16 35 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 36 H 0.07 -0.29 8.14 -2.38 -0.02 -0.30 16 37 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 39 H 0.08 -0.48 6.40 -2.39 -0.02 -0.49 16 40 H 0.06 0.01 6.08 -2.39 -0.01 -0.01 16 41 H 0.45 -3.86 8.96 -92.71 -0.83 -4.69 16 42 H 0.12 -0.11 8.01 -2.39 -0.02 -0.13 16 43 H 0.14 -0.18 7.86 -2.38 -0.02 -0.20 16 44 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 46 H 0.15 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.39 -0.93 8.70 -74.05 -0.64 -1.58 16 48 H -0.27 -1.52 7.11 99.48 0.71 -0.82 16 49 H -0.29 -2.30 7.11 99.48 0.71 -1.59 16 Total: 0.00 -17.52 386.34 0.58 -16.94 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: -0.45 Total: -14.73 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.49 Total: 10.22 kcal Atomic # 7 Polarization: 1.62 SS G_CDS: -4.62 Total: -3.01 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -2.05 Total: -12.55 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: 2.20 Total: 3.13 kcal Total: -17.52 0.58 -16.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16621382_18345148.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.537 kcal (2) G-P(sol) polarization free energy of solvation -17.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds