Wall clock time and date at job start Tue Mar 9 2021 17:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47398 * 239.99907 * 2 1 3 5 5 Si 1.86304 * 109.47363 * 120.00176 * 2 1 3 6 6 C 1.86303 * 109.46751 * 300.00263 * 5 2 1 7 7 C 1.86301 * 109.47256 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.47242 * 59.99708 * 5 2 1 9 9 C 1.42903 * 114.00108 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.46864 * 180.02562 * 9 8 5 11 11 O 1.42902 * 109.46824 * 65.00475 * 10 9 8 12 12 C 1.35902 * 116.99768 * 179.97438 * 11 10 9 13 13 C 1.38595 * 120.02260 * 0.26774 * 12 11 10 14 14 C 1.38766 * 119.87667 * 180.27640 * 13 12 11 15 15 N 1.40190 * 120.03498 * 179.77295 * 14 13 12 16 16 C 1.35226 * 126.04790 * 184.69262 * 15 14 13 17 17 C 1.35324 * 107.71299 * 179.87318 * 16 15 14 18 18 C 1.39922 * 107.92626 * 0.38635 * 17 16 15 19 19 N 1.30875 * 108.24710 * 359.75960 * 18 17 16 20 20 C 1.38846 * 119.92625 * 359.74598 * 14 13 12 21 21 C 1.38172 * 120.04239 * 359.97438 * 20 14 13 22 22 C 1.38171 * 120.12142 * 0.02562 * 21 20 14 23 23 C 1.50697 * 119.96252 * 180.02562 * 22 21 20 24 24 O 1.42906 * 109.46831 * 254.99881 * 23 22 21 25 25 Si 1.86300 * 109.47007 * 14.99270 * 23 22 21 26 26 H 1.48503 * 109.46942 * 60.00611 * 25 23 22 27 27 H 1.48503 * 109.47276 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47372 * 300.00074 * 25 23 22 29 29 H 1.08997 * 109.47384 * 300.00014 * 1 2 3 30 30 H 1.09005 * 109.47331 * 60.00033 * 1 2 3 31 31 H 1.09001 * 109.47013 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47949 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47229 * 300.00591 * 3 2 1 34 34 H 1.09007 * 109.46984 * 59.99810 * 3 2 1 35 35 H 1.09001 * 109.47258 * 300.00119 * 4 2 1 36 36 H 1.09005 * 109.46831 * 59.99753 * 4 2 1 37 37 H 1.09001 * 109.47465 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.46937 * 180.02562 * 6 5 2 39 39 H 1.09001 * 109.47147 * 299.99708 * 6 5 2 40 40 H 1.08998 * 109.47461 * 59.99681 * 6 5 2 41 41 H 1.08995 * 109.46737 * 299.99767 * 7 5 2 42 42 H 1.09001 * 109.47270 * 59.99908 * 7 5 2 43 43 H 1.09000 * 109.46778 * 179.97438 * 7 5 2 44 44 H 1.09001 * 109.46827 * 60.00325 * 9 8 5 45 45 H 1.09002 * 109.46644 * 300.00113 * 9 8 5 46 46 H 1.08998 * 109.47518 * 305.00468 * 10 9 8 47 47 H 1.08994 * 109.46985 * 184.99903 * 10 9 8 48 48 H 1.07999 * 120.06455 * 0.02562 * 13 12 11 49 49 H 1.07998 * 126.14958 * 359.97438 * 16 15 14 50 50 H 1.07991 * 126.04135 * 180.16539 * 17 16 15 51 51 H 1.08004 * 125.87990 * 179.73698 * 18 17 16 52 52 H 1.08002 * 119.98213 * 179.97438 * 20 14 13 53 53 H 1.08002 * 119.93926 * 180.02562 * 21 20 14 54 54 H 1.09000 * 109.47374 * 134.99454 * 23 22 21 55 55 H 0.96693 * 114.00047 * 60.00191 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 -0.0001 3.0423 7 6 4.0140 -0.8776 1.5215 8 8 1.6074 -2.4160 1.5212 9 6 2.0286 -3.1814 2.6520 10 6 1.4637 -4.5994 2.5470 11 8 2.0332 -5.2561 1.4127 12 6 1.6347 -6.5335 1.1749 13 6 0.7112 -7.1391 2.0124 14 6 0.3108 -8.4454 1.7702 15 7 -0.6195 -9.0628 2.6179 16 6 -1.0259 -10.3507 2.5498 17 6 -1.9235 -10.5522 3.5423 18 6 -2.0778 -9.3462 4.2348 19 7 -1.2970 -8.4533 3.6818 20 6 0.8321 -9.1401 0.6869 21 6 1.7481 -8.5313 -0.1494 22 6 2.1482 -7.2306 0.0901 23 6 3.1470 -6.5699 -0.8246 24 8 4.4185 -6.5068 -0.1753 25 14 3.3004 -7.5599 -2.3953 26 1 1.9791 -7.6254 -3.0701 27 1 4.2852 -6.9092 -3.2965 28 1 3.7595 -8.9344 -2.0713 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.8937 -0.5136 3.9323 39 1 1.8932 1.0276 3.0423 40 1 0.4399 0.0000 3.0423 41 1 4.3776 -1.3911 0.6315 42 1 4.3770 0.1502 1.5217 43 1 4.3773 -1.3910 2.4117 44 1 1.6637 -2.7112 3.5652 45 1 3.1175 -3.2252 2.6758 46 1 0.3807 -4.5517 2.4334 47 1 1.7101 -5.1565 3.4508 48 1 0.3071 -6.5967 2.8544 49 1 -0.6927 -11.0869 1.8333 50 1 -2.4336 -11.4790 3.7591 51 1 -2.7295 -9.1806 5.0800 52 1 0.5213 -10.1570 0.4977 53 1 2.1522 -9.0731 -0.9918 54 1 2.8100 -5.5609 -1.0625 55 1 4.7802 -7.3705 0.0659 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16772184_10264010.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:43:02 Heat of formation + Delta-G solvation = -49.859030 kcal Electronic energy + Delta-G solvation = -33396.691771 eV Core-core repulsion = 29138.721087 eV Total energy + Delta-G solvation = -4257.970684 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 378.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.57728 -41.32642 -39.11998 -37.65269 -37.60505 -36.83808 -34.51819 -32.01069 -31.45166 -30.75098 -30.14683 -29.32097 -29.07091 -27.84393 -27.39105 -26.54617 -24.95173 -23.75320 -23.00855 -21.70038 -21.54669 -20.42463 -19.86823 -18.31533 -18.13270 -17.83611 -17.27802 -16.80854 -16.59635 -16.21344 -16.03181 -15.93299 -15.68030 -15.50192 -15.26529 -15.11826 -15.08341 -14.85769 -14.74880 -14.60387 -14.13648 -13.93583 -13.68175 -13.66371 -13.52701 -13.38374 -13.30932 -13.18886 -12.96656 -12.94142 -12.88702 -12.66465 -12.41365 -12.25931 -12.16350 -12.08690 -11.84176 -11.77710 -11.70630 -11.60572 -11.53212 -11.29020 -11.16104 -10.33920 -10.32372 -10.20792 -10.06392 -9.62653 -9.01965 -0.34688 0.19909 1.08637 1.19241 1.32205 1.45259 1.50014 1.56856 1.77232 1.80278 1.95380 2.10038 2.13253 2.46548 2.53206 3.36008 3.57886 3.70131 3.77971 3.85327 3.87918 4.02274 4.02967 4.11238 4.11794 4.14266 4.22779 4.27065 4.32940 4.40906 4.46415 4.54526 4.63654 4.69629 4.73163 4.73854 4.77121 4.77648 4.78433 4.81567 4.82051 4.97819 4.98984 5.02229 5.08138 5.08381 5.10716 5.17297 5.18721 5.32058 5.39260 5.39861 5.43943 5.48301 5.58572 5.63086 5.63633 6.06996 6.29611 6.57021 6.80003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.312 2.688 6 C -0.515 4.515 7 C -0.517 4.517 8 O -0.638 6.638 9 C 0.080 3.920 10 C 0.048 3.952 11 O -0.300 6.300 12 C 0.172 3.828 13 C -0.228 4.228 14 C 0.190 3.810 15 N -0.340 5.340 16 C 0.050 3.950 17 C -0.265 4.265 18 C 0.053 3.947 19 N -0.336 5.336 20 C -0.172 4.172 21 C -0.058 4.058 22 C -0.172 4.172 23 C -0.073 4.073 24 O -0.550 6.550 25 Si 0.982 3.018 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.229 1.229 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.138 0.862 49 H 0.212 0.788 50 H 0.180 0.820 51 H 0.214 0.786 52 H 0.163 0.837 53 H 0.163 0.837 54 H 0.106 0.894 55 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -3.927 1.141 4.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.442 2.558 6 C -0.617 4.617 7 C -0.619 4.619 8 O -0.597 6.597 9 C 0.005 3.995 10 C -0.027 4.027 11 O -0.213 6.213 12 C 0.124 3.876 13 C -0.249 4.249 14 C 0.097 3.903 15 N -0.116 5.116 16 C -0.091 4.091 17 C -0.293 4.293 18 C -0.134 4.134 19 N -0.155 5.155 20 C -0.193 4.193 21 C -0.076 4.076 22 C -0.174 4.174 23 C -0.183 4.183 24 O -0.357 6.357 25 Si 0.804 3.196 26 H -0.178 1.178 27 H -0.201 1.201 28 H -0.152 1.152 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.156 0.844 49 H 0.229 0.771 50 H 0.197 0.803 51 H 0.230 0.770 52 H 0.181 0.819 53 H 0.180 0.820 54 H 0.124 0.876 55 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.197 -2.598 0.051 2.606 hybrid contribution -0.454 -0.428 0.890 1.087 sum -0.257 -3.026 0.941 3.179 Atomic orbital electron populations 1.21529 0.94254 1.01572 1.01935 1.25897 1.00371 1.03094 1.13059 1.21596 1.01242 0.94545 1.02303 1.21527 1.00931 0.99878 0.96997 0.76285 0.62391 0.52674 0.64458 1.27047 1.06929 1.09899 1.17810 1.27106 1.25543 1.04847 1.04369 1.85387 1.79436 1.46784 1.48095 1.22297 0.99876 0.89112 0.88249 1.23240 0.98963 0.92720 0.87732 1.86223 1.64364 1.22949 1.47734 1.18673 0.91593 0.84301 0.93002 1.20941 1.03813 0.95917 1.04224 1.17533 0.89941 0.92408 0.90377 1.46062 1.32445 1.08807 1.24278 1.23349 0.97664 0.86611 1.01521 1.22066 1.06073 1.01226 0.99948 1.24708 0.97124 0.91448 1.00100 1.77417 1.12752 1.23475 1.01818 1.20933 1.01308 1.02322 0.94703 1.21010 0.95077 0.92630 0.98858 1.19910 1.03912 0.95395 0.98147 1.24972 0.83098 1.07340 1.02853 1.86533 1.32713 1.35500 1.80913 0.85298 0.80615 0.78978 0.74710 1.17847 1.20120 1.15204 0.91893 0.93284 0.92894 0.91888 0.93073 0.91635 0.92896 0.93213 0.92273 0.90711 0.90215 0.90998 0.91641 0.90309 0.91128 0.87926 0.90773 0.91114 0.89434 0.84447 0.77135 0.80297 0.76953 0.81907 0.82019 0.87628 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.29 7.85 71.98 0.56 0.27 16 2 C -0.38 -0.52 0.53 -10.80 -0.01 -0.53 16 3 C -0.14 0.00 7.85 71.98 0.56 0.57 16 4 C -0.14 -0.42 7.85 71.98 0.56 0.14 16 5 Si 1.31 -0.76 8.45 68.60 0.58 -0.18 16 6 C -0.51 0.85 8.50 113.37 0.96 1.81 16 7 C -0.52 -0.29 8.50 113.37 0.96 0.67 16 8 O -0.64 -1.97 8.52 -144.34 -1.23 -3.20 16 9 C 0.08 -0.01 5.51 71.98 0.40 0.39 16 10 C 0.05 0.12 5.12 71.98 0.37 0.49 16 11 O -0.30 -2.19 9.43 -87.80 -0.83 -3.02 16 12 C 0.17 1.11 6.66 22.49 0.15 1.26 16 13 C -0.23 -1.54 8.65 22.48 0.19 -1.35 16 14 C 0.19 0.99 6.68 38.08 0.25 1.24 16 15 N -0.34 -1.97 3.80 -187.80 -0.71 -2.68 16 16 C 0.05 0.00 10.79 83.50 0.90 0.90 16 17 C -0.27 0.16 10.81 22.00 0.24 0.40 16 18 C 0.05 0.13 12.03 85.24 1.03 1.15 16 19 N -0.34 -2.78 11.88 -56.97 -0.68 -3.46 16 20 C -0.17 0.06 9.45 22.40 0.21 0.27 16 21 C -0.06 0.05 8.65 22.24 0.19 0.24 16 22 C -0.17 -0.55 5.27 -19.75 -0.10 -0.65 16 23 C -0.07 -0.16 2.37 71.23 0.17 0.01 16 24 O -0.55 -1.77 12.88 -148.98 -1.92 -3.69 16 25 Si 0.98 -1.25 25.49 68.60 1.75 0.49 16 26 H -0.25 0.05 7.11 99.48 0.71 0.76 16 27 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 28 H -0.23 1.11 6.73 99.48 0.67 1.78 16 29 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 30 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.05 0.18 7.97 -2.39 -0.02 0.16 16 32 H 0.06 -0.09 7.79 -2.39 -0.02 -0.10 16 33 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.06 -0.13 7.79 -2.38 -0.02 -0.15 16 35 H 0.05 0.24 7.97 -2.39 -0.02 0.22 16 36 H 0.05 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.06 0.12 7.79 -2.39 -0.02 0.10 16 38 H 0.07 -0.23 7.48 -2.38 -0.02 -0.25 16 39 H 0.08 -0.19 7.79 -2.39 -0.02 -0.20 16 40 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 41 H 0.06 0.17 7.79 -2.39 -0.02 0.15 16 42 H 0.08 -0.05 7.79 -2.39 -0.02 -0.07 16 43 H 0.07 -0.02 7.48 -2.39 -0.02 -0.04 16 44 H 0.10 -0.58 7.21 -2.39 -0.02 -0.60 16 45 H 0.07 -0.10 7.22 -2.39 -0.02 -0.11 16 46 H 0.07 0.20 7.65 -2.39 -0.02 0.18 16 47 H 0.09 -0.06 7.67 -2.39 -0.02 -0.07 16 48 H 0.14 1.01 5.94 -2.91 -0.02 1.00 16 49 H 0.21 -1.75 7.06 -2.91 -0.02 -1.77 16 50 H 0.18 -1.11 8.06 -2.92 -0.02 -1.13 16 51 H 0.21 -0.90 8.06 -2.91 -0.02 -0.92 16 52 H 0.16 -1.12 6.75 -2.91 -0.02 -1.14 16 53 H 0.16 -0.99 4.88 -2.91 -0.01 -1.00 16 54 H 0.11 0.46 7.83 -2.39 -0.02 0.45 16 55 H 0.39 -1.71 8.70 -74.06 -0.64 -2.36 16 Total: 0.00 -18.96 439.13 5.52 -13.43 By element: Atomic # 1 Polarization: -5.94 SS G_CDS: 0.95 Total: -4.99 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.61 Total: 7.29 kcal Atomic # 7 Polarization: -4.75 SS G_CDS: -1.39 Total: -6.14 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -3.98 Total: -9.91 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: 2.33 Total: 0.31 kcal Total: -18.96 5.52 -13.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16772184_10264010.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.425 kcal (2) G-P(sol) polarization free energy of solvation -18.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds