Wall clock time and date at job start Tue Mar 9 2021 17:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47037 * 2 1 4 4 C 1.50696 * 109.47494 * 239.99824 * 2 1 3 5 5 C 1.38764 * 119.96256 * 285.00139 * 4 2 1 6 6 O 1.35896 * 120.02160 * 359.95551 * 5 4 2 7 7 C 1.42899 * 117.00053 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47264 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.84910 * 43.80929 * 8 7 6 10 10 C 1.53779 * 113.61453 * 175.00164 * 8 7 6 11 11 C 1.53779 * 87.08125 * 139.98544 * 10 8 7 12 12 H 1.08998 * 113.61721 * 89.20073 * 11 10 8 13 13 O 1.42908 * 113.61219 * 220.02144 * 11 10 8 14 14 C 1.53775 * 113.61704 * 272.50108 * 8 7 6 15 15 C 1.38633 * 119.95289 * 179.97438 * 5 4 2 16 16 C 1.38718 * 119.88278 * 359.97438 * 15 5 4 17 17 N 1.40182 * 120.04328 * 179.97438 * 16 15 5 18 18 C 1.35219 * 126.05909 * 185.02476 * 17 16 15 19 19 C 1.35322 * 107.71797 * 179.97438 * 18 17 16 20 20 C 1.39916 * 107.92794 * 359.97438 * 19 18 17 21 21 N 1.30875 * 108.24617 * 359.71951 * 20 19 18 22 22 C 1.38895 * 119.92408 * 359.97438 * 16 15 5 23 23 C 1.38134 * 120.04162 * 0.02562 * 22 16 15 24 24 H 0.96694 * 114.00378 * 300.00203 * 1 2 3 25 25 H 1.08998 * 109.46766 * 119.99834 * 2 1 3 26 26 H 1.48497 * 110.00139 * 299.99866 * 3 2 1 27 27 H 1.48508 * 109.99898 * 61.31750 * 3 2 1 28 28 H 1.08999 * 109.46973 * 299.99901 * 7 6 5 29 29 H 1.09005 * 109.46754 * 59.99845 * 7 6 5 30 30 H 1.09006 * 113.61623 * 254.53332 * 10 8 7 31 31 H 1.09000 * 113.61351 * 25.34662 * 10 8 7 32 32 H 0.96699 * 113.99570 * 180.02562 * 13 11 10 33 33 H 1.08996 * 113.61501 * 334.56519 * 14 8 7 34 34 H 1.09001 * 113.61695 * 105.47346 * 14 8 7 35 35 H 1.08005 * 120.06052 * 180.02562 * 15 5 4 36 36 H 1.08007 * 126.14165 * 0.02562 * 18 17 16 37 37 H 1.07997 * 126.03440 * 179.97438 * 19 18 17 38 38 H 1.08005 * 125.87922 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98288 * 179.72228 * 22 16 15 40 40 H 1.07994 * 119.94075 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8691 -2.0946 -1.3054 6 8 1.3561 -2.8093 -0.2696 7 6 1.3234 -4.2305 -0.4152 8 6 0.7181 -4.8582 0.8419 9 1 -0.1667 -4.3287 1.1953 10 6 0.5248 -6.3803 0.7386 11 6 0.9976 -6.4604 2.1997 12 1 0.1895 -6.3705 2.9257 13 8 1.8589 -7.5700 2.4626 14 6 1.7497 -5.1432 1.9461 15 6 2.3308 -2.7479 -2.4376 16 6 2.8538 -2.0155 -3.4932 17 7 3.3221 -2.6726 -4.6395 18 6 3.9390 -2.0923 -5.6935 19 6 4.2320 -3.0660 -6.5865 20 6 3.7802 -4.2818 -6.0617 21 7 3.2407 -4.0481 -4.8924 22 6 2.9128 -0.6301 -3.4133 23 6 2.4518 0.0177 -2.2836 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 -1.2085 27 1 1.5878 2.4586 1.2243 28 1 0.7161 -4.4931 -1.2814 29 1 2.3376 -4.6047 -0.5555 30 1 -0.5138 -6.6801 0.5986 31 1 1.2025 -6.8594 0.0320 32 1 2.1593 -7.6259 3.3800 33 1 2.7632 -5.2845 1.5708 34 1 1.6999 -4.4444 2.7811 35 1 2.2828 -3.8252 -2.4981 36 1 4.1593 -1.0406 -5.8028 37 1 4.7271 -2.9288 -7.5364 38 1 3.8667 -5.2476 -6.5372 39 1 3.3238 -0.0592 -4.2327 40 1 2.4988 1.0949 -2.2230 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16772184_11354858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:43:20 Heat of formation + Delta-G solvation = 29.370409 kcal Electronic energy + Delta-G solvation = -24408.120147 eV Core-core repulsion = 20772.178548 eV Total energy + Delta-G solvation = -3635.941599 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.53616 -41.37895 -40.32768 -38.57802 -37.69883 -36.05509 -34.55611 -31.92170 -31.08979 -30.73920 -29.22946 -26.81197 -26.50092 -24.56465 -23.63903 -22.94926 -21.69240 -21.52210 -20.57911 -19.67766 -18.59959 -18.48151 -17.73147 -17.26288 -16.98455 -16.93585 -16.37326 -16.14712 -15.84528 -15.61433 -15.30102 -15.12269 -14.70394 -14.53943 -14.20188 -13.84996 -13.79918 -13.70721 -13.51615 -13.33877 -12.90332 -12.63261 -12.53276 -12.41211 -12.08427 -11.79983 -11.78990 -11.68138 -11.31112 -11.07770 -10.80721 -10.39597 -10.15354 -9.56066 -8.97059 -4.98602 -0.28695 0.25995 1.12832 1.27177 1.34696 1.56094 1.81286 1.91459 2.04969 2.55930 3.18556 3.32834 3.38685 3.47662 3.50943 3.66694 3.73772 3.79162 3.84484 3.90986 3.97666 4.10737 4.17342 4.18146 4.26104 4.34745 4.43148 4.54779 4.61102 4.63727 4.68742 4.70986 4.71636 4.90355 4.95132 5.01158 5.05350 5.14739 5.22800 5.30240 5.46750 5.62239 6.08025 6.30913 6.51984 6.62245 6.65869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.062 4.062 3 Si 0.683 3.317 4 C -0.117 4.117 5 C 0.183 3.817 6 O -0.296 6.296 7 C 0.068 3.932 8 C -0.108 4.108 9 H 0.106 0.894 10 C -0.121 4.121 11 C 0.076 3.924 12 H 0.085 0.915 13 O -0.560 6.560 14 C -0.163 4.163 15 C -0.215 4.215 16 C 0.209 3.791 17 N -0.327 5.327 18 C 0.055 3.945 19 C -0.259 4.259 20 C 0.060 3.940 21 N -0.292 5.292 22 C -0.176 4.176 23 C -0.050 4.050 24 H 0.377 0.623 25 H 0.076 0.924 26 H -0.253 1.253 27 H -0.260 1.260 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.380 0.620 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.181 0.819 37 H 0.157 0.843 38 H 0.192 0.808 39 H 0.137 0.863 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 1.793 1.261 3.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.171 4.171 3 Si 0.585 3.415 4 C -0.118 4.118 5 C 0.136 3.864 6 O -0.209 6.209 7 C -0.007 4.007 8 C -0.126 4.126 9 H 0.124 0.876 10 C -0.158 4.158 11 C 0.017 3.983 12 H 0.103 0.897 13 O -0.365 6.365 14 C -0.200 4.200 15 C -0.235 4.235 16 C 0.116 3.884 17 N -0.102 5.102 18 C -0.086 4.086 19 C -0.287 4.287 20 C -0.128 4.128 21 N -0.110 5.110 22 C -0.197 4.197 23 C -0.069 4.069 24 H 0.225 0.775 25 H 0.094 0.906 26 H -0.178 1.178 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.228 0.772 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.198 0.802 37 H 0.174 0.826 38 H 0.209 0.791 39 H 0.155 0.845 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.694 1.775 1.318 2.785 hybrid contribution -0.551 0.119 0.057 0.566 sum 1.143 1.894 1.375 2.605 Atomic orbital electron populations 1.86621 1.17745 1.80051 1.49422 1.24581 0.84520 1.10205 0.97829 0.95169 0.91477 0.74631 0.80258 1.18613 1.05725 0.90242 0.97262 1.18448 0.91252 0.90511 0.86229 1.86136 1.76847 1.19723 1.38178 1.22900 1.01121 0.77902 0.98781 1.22309 1.00077 0.95485 0.94742 0.87578 1.23072 1.02576 0.93824 0.96331 1.23287 0.92536 0.85476 0.96967 0.89746 1.86532 1.67560 1.48727 1.33716 1.23774 0.99290 0.97910 0.99071 1.20901 1.07668 1.01432 0.93519 1.17242 0.96130 0.90604 0.84462 1.45917 1.44559 1.05761 1.14002 1.22705 0.97428 1.00490 0.88015 1.21691 1.11863 0.91829 1.03334 1.24168 0.96223 1.00098 0.92296 1.77477 1.24226 0.90913 1.18404 1.20616 1.07324 0.91194 1.00551 1.20719 0.95244 0.99931 0.90964 0.77528 0.90559 1.17829 1.18515 0.91424 0.91413 0.90106 0.88748 0.77229 0.89036 0.90771 0.83637 0.80236 0.82564 0.79144 0.84541 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.13 12.86 -35.23 -0.45 -1.58 16 2 C -0.06 -0.05 2.36 36.00 0.09 0.04 16 3 Si 0.68 -0.65 30.20 -169.99 -5.13 -5.78 16 4 C -0.12 -0.24 5.31 -104.44 -0.55 -0.80 16 5 C 0.18 0.55 6.66 -39.24 -0.26 0.29 16 6 O -0.30 -0.82 9.46 -19.41 -0.18 -1.01 16 7 C 0.07 0.06 4.58 37.16 0.17 0.23 16 8 C -0.11 0.02 4.01 -89.81 -0.36 -0.34 16 9 H 0.11 -0.03 8.14 -51.93 -0.42 -0.45 16 10 C -0.12 0.02 7.47 -25.92 -0.19 -0.17 16 11 C 0.08 -0.03 5.21 -25.92 -0.14 -0.16 16 12 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 13 O -0.56 -0.50 13.67 -35.23 -0.48 -0.99 16 14 C -0.16 0.07 7.46 -25.92 -0.19 -0.12 16 15 C -0.21 -0.68 8.65 -39.26 -0.34 -1.02 16 16 C 0.21 0.59 6.68 -83.62 -0.56 0.03 16 17 N -0.33 -1.03 3.80 -10.71 -0.04 -1.07 16 18 C 0.06 0.04 10.79 -17.10 -0.18 -0.14 16 19 C -0.26 -0.11 10.81 -39.99 -0.43 -0.54 16 20 C 0.06 0.09 12.03 -17.33 -0.21 -0.12 16 21 N -0.29 -1.20 11.88 30.64 0.36 -0.83 16 22 C -0.18 -0.13 9.46 -39.38 -0.37 -0.50 16 23 C -0.05 -0.03 8.65 -39.63 -0.34 -0.38 16 24 H 0.38 -0.71 8.74 45.56 0.40 -0.31 16 25 H 0.08 0.00 7.82 -51.93 -0.41 -0.40 16 26 H -0.25 -0.35 6.74 56.52 0.38 0.03 16 27 H -0.26 -0.29 7.11 56.52 0.40 0.12 16 28 H 0.07 0.06 7.66 -51.93 -0.40 -0.34 16 29 H 0.07 0.04 7.36 -51.93 -0.38 -0.34 16 30 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.09 0.04 8.10 -51.93 -0.42 -0.38 16 32 H 0.38 -1.20 9.12 45.56 0.42 -0.78 16 33 H 0.09 0.02 7.89 -51.93 -0.41 -0.39 16 34 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.15 0.47 5.94 -52.48 -0.31 0.16 16 36 H 0.18 -0.51 7.06 -52.48 -0.37 -0.88 16 37 H 0.16 -0.31 8.06 -52.49 -0.42 -0.74 16 38 H 0.19 -0.32 8.06 -52.48 -0.42 -0.74 16 39 H 0.14 -0.27 6.76 -52.49 -0.35 -0.63 16 40 H 0.14 -0.18 4.89 -52.49 -0.26 -0.44 16 LS Contribution 335.86 15.07 5.06 5.06 Total: 0.00 -8.95 335.86 -9.00 -17.95 By element: Atomic # 1 Polarization: -3.81 SS G_CDS: -4.25 Total: -8.06 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.88 Total: -3.70 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: 0.32 Total: -1.90 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -1.12 Total: -3.57 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.13 Total: -5.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -8.95 -9.00 -17.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16772184_11354858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.323 kcal (2) G-P(sol) polarization free energy of solvation -8.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds