Wall clock time and date at job start Tue Mar 9 2021 17:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47037 * 2 1 4 4 C 1.50696 * 109.47494 * 239.99824 * 2 1 3 5 5 C 1.38764 * 119.96256 * 285.00139 * 4 2 1 6 6 O 1.35896 * 120.02160 * 359.95551 * 5 4 2 7 7 C 1.42899 * 117.00053 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47264 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.84910 * 43.80929 * 8 7 6 10 10 C 1.53779 * 113.61453 * 175.00164 * 8 7 6 11 11 C 1.53779 * 87.08125 * 139.98544 * 10 8 7 12 12 H 1.08998 * 113.61721 * 89.20073 * 11 10 8 13 13 O 1.42908 * 113.61219 * 220.02144 * 11 10 8 14 14 C 1.53775 * 113.61704 * 272.50108 * 8 7 6 15 15 C 1.38633 * 119.95289 * 179.97438 * 5 4 2 16 16 C 1.38718 * 119.88278 * 359.97438 * 15 5 4 17 17 N 1.40182 * 120.04328 * 179.97438 * 16 15 5 18 18 C 1.35219 * 126.05909 * 185.02476 * 17 16 15 19 19 C 1.35322 * 107.71797 * 179.97438 * 18 17 16 20 20 C 1.39916 * 107.92794 * 359.97438 * 19 18 17 21 21 N 1.30875 * 108.24617 * 359.71951 * 20 19 18 22 22 C 1.38895 * 119.92408 * 359.97438 * 16 15 5 23 23 C 1.38134 * 120.04162 * 0.02562 * 22 16 15 24 24 H 0.96694 * 114.00378 * 300.00203 * 1 2 3 25 25 H 1.08998 * 109.46766 * 119.99834 * 2 1 3 26 26 H 1.48497 * 110.00139 * 299.99866 * 3 2 1 27 27 H 1.48508 * 109.99898 * 61.31750 * 3 2 1 28 28 H 1.08999 * 109.46973 * 299.99901 * 7 6 5 29 29 H 1.09005 * 109.46754 * 59.99845 * 7 6 5 30 30 H 1.09006 * 113.61623 * 254.53332 * 10 8 7 31 31 H 1.09000 * 113.61351 * 25.34662 * 10 8 7 32 32 H 0.96699 * 113.99570 * 180.02562 * 13 11 10 33 33 H 1.08996 * 113.61501 * 334.56519 * 14 8 7 34 34 H 1.09001 * 113.61695 * 105.47346 * 14 8 7 35 35 H 1.08005 * 120.06052 * 180.02562 * 15 5 4 36 36 H 1.08007 * 126.14165 * 0.02562 * 18 17 16 37 37 H 1.07997 * 126.03440 * 179.97438 * 19 18 17 38 38 H 1.08005 * 125.87922 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98288 * 179.72228 * 22 16 15 40 40 H 1.07994 * 119.94075 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8691 -2.0946 -1.3054 6 8 1.3561 -2.8093 -0.2696 7 6 1.3234 -4.2305 -0.4152 8 6 0.7181 -4.8582 0.8419 9 1 -0.1667 -4.3287 1.1953 10 6 0.5248 -6.3803 0.7386 11 6 0.9976 -6.4604 2.1997 12 1 0.1895 -6.3705 2.9257 13 8 1.8589 -7.5700 2.4626 14 6 1.7497 -5.1432 1.9461 15 6 2.3308 -2.7479 -2.4376 16 6 2.8538 -2.0155 -3.4932 17 7 3.3221 -2.6726 -4.6395 18 6 3.9390 -2.0923 -5.6935 19 6 4.2320 -3.0660 -6.5865 20 6 3.7802 -4.2818 -6.0617 21 7 3.2407 -4.0481 -4.8924 22 6 2.9128 -0.6301 -3.4133 23 6 2.4518 0.0177 -2.2836 24 1 -0.3933 0.4417 0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5615 2.4679 -1.2085 27 1 1.5878 2.4586 1.2243 28 1 0.7161 -4.4931 -1.2814 29 1 2.3376 -4.6047 -0.5555 30 1 -0.5138 -6.6801 0.5986 31 1 1.2025 -6.8594 0.0320 32 1 2.1593 -7.6259 3.3800 33 1 2.7632 -5.2845 1.5708 34 1 1.6999 -4.4444 2.7811 35 1 2.2828 -3.8252 -2.4981 36 1 4.1593 -1.0406 -5.8028 37 1 4.7271 -2.9288 -7.5364 38 1 3.8667 -5.2476 -6.5372 39 1 3.3238 -0.0592 -4.2327 40 1 2.4988 1.0949 -2.2230 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16772184_11354858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:43:19 Heat of formation + Delta-G solvation = 28.585386 kcal Electronic energy + Delta-G solvation = -24408.154188 eV Core-core repulsion = 20772.178548 eV Total energy + Delta-G solvation = -3635.975640 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60109 -41.46950 -40.34408 -38.66945 -37.77649 -36.08481 -34.63832 -32.01476 -31.16220 -30.80214 -29.30103 -26.81014 -26.56312 -24.62684 -23.68622 -23.00992 -21.77482 -21.56856 -20.59423 -19.74730 -18.62154 -18.54817 -17.80284 -17.34408 -17.08703 -17.00134 -16.39526 -16.22703 -15.87977 -15.64354 -15.34087 -15.20146 -14.72020 -14.56953 -14.24816 -13.91106 -13.87085 -13.68740 -13.53237 -13.41913 -12.94394 -12.67326 -12.58183 -12.45725 -12.14759 -11.84906 -11.83426 -11.74878 -11.32368 -11.16514 -10.79773 -10.42828 -10.22852 -9.68335 -9.05998 -4.90422 -0.38194 0.16219 1.05858 1.29139 1.31331 1.61564 1.79199 1.93207 1.96500 2.46365 3.23724 3.29428 3.36931 3.47130 3.51078 3.61945 3.72869 3.80340 3.87385 3.89958 3.99239 4.07020 4.12335 4.15349 4.21748 4.28804 4.36136 4.50410 4.61425 4.63095 4.68936 4.69484 4.72940 4.91683 4.93905 5.00274 5.05772 5.07918 5.16087 5.29976 5.40517 5.61328 6.03804 6.19429 6.55321 6.61975 6.84246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.080 4.080 3 Si 0.775 3.225 4 C -0.130 4.130 5 C 0.166 3.834 6 O -0.306 6.306 7 C 0.070 3.930 8 C -0.103 4.103 9 H 0.109 0.891 10 C -0.124 4.124 11 C 0.078 3.922 12 H 0.102 0.898 13 O -0.581 6.581 14 C -0.159 4.159 15 C -0.229 4.229 16 C 0.191 3.809 17 N -0.340 5.340 18 C 0.051 3.949 19 C -0.265 4.265 20 C 0.053 3.947 21 N -0.340 5.340 22 C -0.169 4.169 23 C -0.049 4.049 24 H 0.391 0.609 25 H 0.079 0.921 26 H -0.279 1.279 27 H -0.287 1.287 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.215 0.785 37 H 0.181 0.819 38 H 0.214 0.786 39 H 0.168 0.832 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 3.149 0.923 4.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.187 4.187 3 Si 0.678 3.322 4 C -0.132 4.132 5 C 0.119 3.881 6 O -0.219 6.219 7 C -0.005 4.005 8 C -0.121 4.121 9 H 0.127 0.873 10 C -0.162 4.162 11 C 0.019 3.981 12 H 0.120 0.880 13 O -0.390 6.390 14 C -0.196 4.196 15 C -0.250 4.250 16 C 0.098 3.902 17 N -0.116 5.116 18 C -0.090 4.090 19 C -0.292 4.292 20 C -0.133 4.133 21 N -0.159 5.159 22 C -0.189 4.189 23 C -0.067 4.067 24 H 0.241 0.759 25 H 0.097 0.903 26 H -0.206 1.206 27 H -0.214 1.214 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.246 0.754 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.231 0.769 37 H 0.199 0.801 38 H 0.230 0.770 39 H 0.185 0.815 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.273 3.102 0.995 3.972 hybrid contribution -0.734 -0.333 0.135 0.817 sum 1.540 2.769 1.130 3.363 Atomic orbital electron populations 1.86570 1.18642 1.80789 1.50575 1.24966 0.84067 1.12214 0.97448 0.94093 0.89933 0.71004 0.77128 1.18951 1.05891 0.90043 0.98297 1.18664 0.91945 0.91190 0.86308 1.86107 1.77071 1.20315 1.38444 1.22922 1.00931 0.77429 0.99241 1.22279 1.00198 0.95380 0.94274 0.87270 1.23092 1.02811 0.93657 0.96624 1.23367 0.92756 0.84992 0.96989 0.88014 1.86487 1.67923 1.49148 1.35413 1.23718 0.98644 0.98232 0.99053 1.20897 1.08715 1.01072 0.94296 1.17529 0.96570 0.91575 0.84504 1.46052 1.45292 1.05657 1.14635 1.23391 0.96311 1.02201 0.87093 1.22076 1.11715 0.91202 1.04235 1.24714 0.95220 1.01693 0.91708 1.77433 1.26238 0.92156 1.20036 1.20965 1.06268 0.90400 1.01315 1.21006 0.94400 1.00882 0.90413 0.75869 0.90290 1.20627 1.21374 0.92051 0.91774 0.89345 0.89849 0.75390 0.90047 0.90000 0.84863 0.76874 0.80132 0.76975 0.81483 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.70 12.86 -148.98 -1.92 -4.62 16 2 C -0.08 -0.15 2.36 71.23 0.17 0.02 16 3 Si 0.78 -2.10 30.20 68.60 2.07 -0.03 16 4 C -0.13 -0.63 5.31 -19.75 -0.10 -0.73 16 5 C 0.17 1.32 6.66 22.49 0.15 1.47 16 6 O -0.31 -2.35 9.46 -92.38 -0.87 -3.23 16 7 C 0.07 0.30 4.58 71.98 0.33 0.63 16 8 C -0.10 -0.11 4.01 -10.27 -0.04 -0.15 16 9 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 10 C -0.12 -0.11 7.47 31.12 0.23 0.12 16 11 C 0.08 -0.02 5.21 31.12 0.16 0.14 16 12 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 13 O -0.58 -1.34 13.67 -148.98 -2.04 -3.38 16 14 C -0.16 -0.01 7.46 31.12 0.23 0.22 16 15 C -0.23 -1.99 8.65 22.48 0.19 -1.80 16 16 C 0.19 1.27 6.68 38.08 0.25 1.52 16 17 N -0.34 -2.39 3.80 -187.81 -0.71 -3.10 16 18 C 0.05 0.03 10.79 83.50 0.90 0.93 16 19 C -0.26 -0.03 10.81 22.00 0.24 0.21 16 20 C 0.05 0.19 12.03 85.24 1.03 1.21 16 21 N -0.34 -3.33 11.88 -56.97 -0.68 -4.01 16 22 C -0.17 -0.14 9.46 22.40 0.21 0.08 16 23 C -0.05 -0.04 8.65 22.24 0.19 0.15 16 24 H 0.39 -1.30 8.74 -74.06 -0.65 -1.94 16 25 H 0.08 0.05 7.82 -2.39 -0.02 0.04 16 26 H -0.28 -0.46 6.74 99.48 0.67 0.22 16 27 H -0.29 -0.48 7.11 99.48 0.71 0.23 16 28 H 0.06 0.31 7.66 -2.39 -0.02 0.29 16 29 H 0.06 0.29 7.36 -2.38 -0.02 0.27 16 30 H 0.09 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.08 0.26 8.10 -2.39 -0.02 0.24 16 32 H 0.40 -2.41 9.12 -74.06 -0.68 -3.08 16 33 H 0.08 0.18 7.89 -2.39 -0.02 0.16 16 34 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.13 1.35 5.94 -2.91 -0.02 1.33 16 36 H 0.21 -1.70 7.06 -2.91 -0.02 -1.72 16 37 H 0.18 -1.04 8.06 -2.91 -0.02 -1.06 16 38 H 0.21 -0.65 8.06 -2.91 -0.02 -0.68 16 39 H 0.17 -1.05 6.76 -2.91 -0.02 -1.07 16 40 H 0.17 -0.68 4.89 -2.91 -0.01 -0.70 16 Total: 0.00 -22.21 335.86 -0.23 -22.44 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: -0.23 Total: -8.11 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.15 Total: 4.03 kcal Atomic # 7 Polarization: -5.72 SS G_CDS: -1.39 Total: -7.11 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -4.83 Total: -11.22 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.07 Total: -0.03 kcal Total: -22.21 -0.23 -22.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16772184_11354858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.026 kcal (2) G-P(sol) polarization free energy of solvation -22.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds