Wall clock time and date at job start Tue Mar 9 2021 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86293 * 109.47084 * 2 1 4 4 C 1.86298 * 109.46922 * 240.00107 * 2 1 3 5 5 C 1.86301 * 109.47262 * 120.00289 * 2 1 3 6 6 O 1.42900 * 109.47008 * 66.27201 * 5 2 1 7 7 C 1.35904 * 117.00293 * 77.93932 * 6 5 2 8 8 C 1.38594 * 120.02157 * 6.07831 * 7 6 5 9 9 C 1.38765 * 119.87863 * 180.27439 * 8 7 6 10 10 N 1.40181 * 120.03783 * 179.77419 * 9 8 7 11 11 C 1.35223 * 126.05109 * 184.69540 * 10 9 8 12 12 C 1.35315 * 107.71201 * 179.87554 * 11 10 9 13 13 C 1.39928 * 107.93234 * 0.38911 * 12 11 10 14 14 N 1.30875 * 108.24069 * 359.75764 * 13 12 11 15 15 C 1.38846 * 119.92248 * 359.75578 * 9 8 7 16 16 C 1.38176 * 120.04334 * 359.97256 * 15 9 8 17 17 C 1.38165 * 120.12000 * 0.02562 * 16 15 9 18 18 C 1.50700 * 119.95992 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47221 * 255.00164 * 18 17 16 20 20 Si 1.86304 * 109.47269 * 14.99705 * 18 17 16 21 21 H 1.48501 * 109.47379 * 180.02562 * 20 18 17 22 22 H 1.48500 * 109.46972 * 300.00438 * 20 18 17 23 23 H 1.48504 * 109.47072 * 59.99749 * 20 18 17 24 24 H 1.09003 * 109.47152 * 299.99822 * 1 2 3 25 25 H 1.08992 * 109.47536 * 59.99601 * 1 2 3 26 26 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47219 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47393 * 300.00043 * 3 2 1 29 29 H 1.09001 * 109.47355 * 60.00745 * 3 2 1 30 30 H 1.09004 * 109.47462 * 294.68692 * 4 2 1 31 31 H 1.09001 * 109.47233 * 54.68748 * 4 2 1 32 32 H 1.09005 * 109.47354 * 174.68274 * 4 2 1 33 33 H 1.08996 * 109.47055 * 306.26943 * 5 2 1 34 34 H 1.09002 * 109.47013 * 186.27058 * 5 2 1 35 35 H 1.08006 * 120.05956 * 0.03028 * 8 7 6 36 36 H 1.08004 * 126.14513 * 359.97438 * 11 10 9 37 37 H 1.08008 * 126.03910 * 180.16436 * 12 11 10 38 38 H 1.08000 * 125.87514 * 179.74265 * 13 12 11 39 39 H 1.07994 * 119.98097 * 179.97438 * 15 9 8 40 40 H 1.08001 * 119.93691 * 180.02562 * 16 15 9 41 41 H 1.08998 * 109.47513 * 134.99553 * 18 17 16 42 42 H 0.96699 * 114.00489 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.1317 -2.2613 1.4497 7 6 2.8901 -3.0505 0.6441 8 6 4.0242 -2.5350 0.0370 9 6 4.7933 -3.3418 -0.7896 10 7 5.9385 -2.8224 -1.4092 11 6 6.7220 -3.4679 -2.3024 12 6 7.7178 -2.6249 -2.6613 13 6 7.5430 -1.4276 -1.9584 14 7 6.4772 -1.5451 -1.2080 15 6 4.4274 -4.6643 -1.0019 16 6 3.2991 -5.1766 -0.3904 17 6 2.5321 -4.3748 0.4329 18 6 1.3026 -4.9374 1.0984 19 8 0.1355 -4.4446 0.4374 20 14 1.3363 -6.7972 0.9946 21 1 0.1245 -7.3517 1.6499 22 1 1.3619 -7.2131 -0.4307 23 1 2.5492 -7.3095 1.6815 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.5739 1.7564 -0.0005 28 1 2.1207 2.2702 -0.8899 29 1 2.1207 2.2702 0.8900 30 1 2.2004 -1.9297 -1.4749 31 1 2.0450 -0.4222 -2.4086 32 1 3.5698 -0.7965 -1.5701 33 1 2.0320 -0.4334 2.4075 34 1 3.5683 -0.7821 1.5789 35 1 4.3068 -1.5059 0.2037 36 1 6.5780 -4.4748 -2.6656 37 1 8.5100 -2.8395 -3.3634 38 1 8.1783 -0.5568 -2.0238 39 1 5.0249 -5.2929 -1.6453 40 1 3.0163 -6.2056 -0.5565 41 1 1.2838 -4.6322 2.1446 42 1 -0.6951 -4.7662 0.8139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16772184_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:49:42 Heat of formation + Delta-G solvation = 16.869984 kcal Electronic energy + Delta-G solvation = -23900.505853 eV Core-core repulsion = 20586.261424 eV Total energy + Delta-G solvation = -3314.244429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53508 -41.26101 -38.60875 -37.58116 -34.54602 -32.04568 -30.96171 -30.79623 -29.65614 -28.42869 -28.27309 -27.80862 -26.45677 -23.79491 -23.35347 -21.68755 -21.48443 -19.68455 -18.42554 -17.61726 -17.39588 -16.96737 -16.67594 -16.13321 -16.06018 -15.63348 -15.19845 -14.92214 -14.70459 -14.24275 -14.18178 -14.07716 -13.89756 -13.77024 -13.72433 -13.58820 -13.31744 -13.21875 -13.07070 -12.96118 -12.77297 -12.64778 -12.13612 -12.06029 -11.75927 -11.66401 -11.21695 -10.89657 -10.80246 -10.67446 -10.23163 -10.11357 -9.32778 -8.88002 -0.25347 0.28208 1.13844 1.15326 1.36611 1.42996 1.49047 1.50793 1.71488 1.80773 1.82454 1.89280 2.41294 2.53460 2.62790 3.38178 3.53993 3.70034 3.80912 3.96523 3.99530 4.11124 4.23520 4.30221 4.39112 4.54373 4.63570 4.66865 4.68972 4.70130 4.71486 4.80147 4.83641 4.86417 4.88108 4.96678 5.03906 5.17616 5.25928 5.44682 5.48138 5.59900 5.62899 5.66623 6.09901 6.34350 6.63835 6.68102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.990 3.010 3 C -0.448 4.448 4 C -0.449 4.449 5 C -0.249 4.249 6 O -0.276 6.276 7 C 0.177 3.823 8 C -0.207 4.207 9 C 0.205 3.795 10 N -0.324 5.324 11 C 0.055 3.945 12 C -0.259 4.259 13 C 0.058 3.942 14 N -0.291 5.291 15 C -0.176 4.176 16 C -0.059 4.059 17 C -0.121 4.121 18 C -0.068 4.068 19 O -0.540 6.540 20 Si 0.940 3.060 21 H -0.254 1.254 22 H -0.247 1.247 23 H -0.248 1.248 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.191 0.809 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.077 0.923 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -1.061 -0.211 1.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.187 2.813 3 C -0.556 4.556 4 C -0.556 4.556 5 C -0.370 4.370 6 O -0.188 6.188 7 C 0.129 3.871 8 C -0.228 4.228 9 C 0.112 3.888 10 N -0.100 5.100 11 C -0.087 4.087 12 C -0.288 4.288 13 C -0.129 4.129 14 N -0.109 5.109 15 C -0.197 4.197 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.179 4.179 19 O -0.346 6.346 20 Si 0.763 3.237 21 H -0.178 1.178 22 H -0.171 1.171 23 H -0.171 1.171 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.208 0.792 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.173 -1.172 0.411 1.254 hybrid contribution 0.501 -0.007 -0.319 0.594 sum 0.328 -1.179 0.092 1.227 Atomic orbital electron populations 1.25997 1.19617 1.05168 1.04284 0.79811 0.68616 0.66811 0.66095 1.26069 1.06468 1.18276 1.04821 1.26429 1.06259 1.08279 1.14668 1.28246 1.05886 0.84938 1.17891 1.86089 1.52073 1.19561 1.61063 1.18461 0.88856 0.90131 0.89653 1.20909 0.96627 1.02128 1.03103 1.17187 0.85062 0.92161 0.94367 1.45890 1.20125 1.11179 1.32789 1.22684 0.92569 0.99846 0.93585 1.21673 1.03743 0.94659 1.08683 1.24147 0.95063 0.99326 0.94352 1.77448 1.12674 0.96776 1.24022 1.20579 1.00258 0.93238 1.05636 1.20680 0.93440 0.99651 0.93924 1.18592 0.98227 0.92040 1.03390 1.24514 0.85537 1.09742 0.98061 1.86524 1.14852 1.74178 1.59041 0.85884 0.81806 0.74552 0.81472 1.17823 1.17060 1.17112 0.91289 0.91190 0.90344 0.90983 0.90708 0.91021 0.90811 0.91276 0.90894 0.87072 0.90813 0.83177 0.80376 0.82670 0.79216 0.84690 0.84360 0.90482 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -0.09 8.65 101.05 0.87 0.78 16 2 Si 0.99 -0.70 11.68 -169.99 -1.99 -2.69 16 3 C -0.45 0.28 8.65 101.05 0.87 1.16 16 4 C -0.45 -0.66 7.03 101.05 0.71 0.06 16 5 C -0.25 -0.03 5.31 101.05 0.54 0.51 16 6 O -0.28 -0.65 9.12 -19.44 -0.18 -0.83 16 7 C 0.18 0.48 5.14 -39.24 -0.20 0.28 16 8 C -0.21 -0.56 5.24 -39.26 -0.21 -0.77 16 9 C 0.21 0.55 6.68 -83.62 -0.56 -0.01 16 10 N -0.32 -0.92 3.80 -10.71 -0.04 -0.96 16 11 C 0.06 0.04 10.79 -17.10 -0.18 -0.15 16 12 C -0.26 -0.08 10.81 -39.99 -0.43 -0.52 16 13 C 0.06 0.07 12.03 -17.33 -0.21 -0.14 16 14 N -0.29 -1.02 11.88 30.64 0.36 -0.66 16 15 C -0.18 -0.18 9.45 -39.38 -0.37 -0.55 16 16 C -0.06 -0.06 8.65 -39.63 -0.34 -0.41 16 17 C -0.12 -0.26 5.31 -104.44 -0.55 -0.82 16 18 C -0.07 -0.04 2.36 36.01 0.09 0.05 16 19 O -0.54 -0.42 12.86 -35.23 -0.45 -0.87 16 20 Si 0.94 -0.47 25.49 -169.99 -4.33 -4.80 16 21 H -0.25 0.08 7.11 56.52 0.40 0.49 16 22 H -0.25 -0.02 6.73 56.52 0.38 0.36 16 23 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 24 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 25 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 26 H 0.08 0.10 7.96 -51.93 -0.41 -0.31 16 27 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 28 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 0.21 6.26 -51.93 -0.33 -0.12 16 31 H 0.07 0.08 7.96 -51.93 -0.41 -0.33 16 32 H 0.07 0.17 6.56 -51.93 -0.34 -0.17 16 33 H 0.11 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.01 6.06 -51.93 -0.31 -0.33 16 35 H 0.15 0.35 4.40 -52.48 -0.23 0.12 16 36 H 0.18 -0.46 7.06 -52.48 -0.37 -0.83 16 37 H 0.16 -0.31 8.06 -52.48 -0.42 -0.73 16 38 H 0.19 -0.37 8.06 -52.49 -0.42 -0.79 16 39 H 0.14 -0.21 6.75 -52.49 -0.35 -0.57 16 40 H 0.14 -0.10 4.88 -52.49 -0.26 -0.36 16 41 H 0.08 -0.02 7.83 -51.93 -0.41 -0.43 16 42 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 LS Contribution 340.23 15.07 5.13 5.13 Total: 0.00 -6.93 340.23 -6.65 -13.58 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -5.17 Total: -7.37 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.02 Total: -0.52 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: 0.32 Total: -1.62 kcal Atomic # 8 Polarization: -1.07 SS G_CDS: -0.63 Total: -1.70 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -6.32 Total: -7.49 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -6.93 -6.65 -13.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16772184_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.453 kcal (2) G-P(sol) polarization free energy of solvation -6.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds