Wall clock time and date at job start Tue Mar 9 2021 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86293 * 109.47084 * 2 1 4 4 C 1.86298 * 109.46922 * 240.00107 * 2 1 3 5 5 C 1.86301 * 109.47262 * 120.00289 * 2 1 3 6 6 O 1.42900 * 109.47008 * 66.27201 * 5 2 1 7 7 C 1.35904 * 117.00293 * 77.93932 * 6 5 2 8 8 C 1.38594 * 120.02157 * 6.07831 * 7 6 5 9 9 C 1.38765 * 119.87863 * 180.27439 * 8 7 6 10 10 N 1.40181 * 120.03783 * 179.77419 * 9 8 7 11 11 C 1.35223 * 126.05109 * 184.69540 * 10 9 8 12 12 C 1.35315 * 107.71201 * 179.87554 * 11 10 9 13 13 C 1.39928 * 107.93234 * 0.38911 * 12 11 10 14 14 N 1.30875 * 108.24069 * 359.75764 * 13 12 11 15 15 C 1.38846 * 119.92248 * 359.75578 * 9 8 7 16 16 C 1.38176 * 120.04334 * 359.97256 * 15 9 8 17 17 C 1.38165 * 120.12000 * 0.02562 * 16 15 9 18 18 C 1.50700 * 119.95992 * 180.02562 * 17 16 15 19 19 O 1.42899 * 109.47221 * 255.00164 * 18 17 16 20 20 Si 1.86304 * 109.47269 * 14.99705 * 18 17 16 21 21 H 1.48501 * 109.47379 * 180.02562 * 20 18 17 22 22 H 1.48500 * 109.46972 * 300.00438 * 20 18 17 23 23 H 1.48504 * 109.47072 * 59.99749 * 20 18 17 24 24 H 1.09003 * 109.47152 * 299.99822 * 1 2 3 25 25 H 1.08992 * 109.47536 * 59.99601 * 1 2 3 26 26 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47219 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47393 * 300.00043 * 3 2 1 29 29 H 1.09001 * 109.47355 * 60.00745 * 3 2 1 30 30 H 1.09004 * 109.47462 * 294.68692 * 4 2 1 31 31 H 1.09001 * 109.47233 * 54.68748 * 4 2 1 32 32 H 1.09005 * 109.47354 * 174.68274 * 4 2 1 33 33 H 1.08996 * 109.47055 * 306.26943 * 5 2 1 34 34 H 1.09002 * 109.47013 * 186.27058 * 5 2 1 35 35 H 1.08006 * 120.05956 * 0.03028 * 8 7 6 36 36 H 1.08004 * 126.14513 * 359.97438 * 11 10 9 37 37 H 1.08008 * 126.03910 * 180.16436 * 12 11 10 38 38 H 1.08000 * 125.87514 * 179.74265 * 13 12 11 39 39 H 1.07994 * 119.98097 * 179.97438 * 15 9 8 40 40 H 1.08001 * 119.93691 * 180.02562 * 16 15 9 41 41 H 1.08998 * 109.47513 * 134.99553 * 18 17 16 42 42 H 0.96699 * 114.00489 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.1317 -2.2613 1.4497 7 6 2.8901 -3.0505 0.6441 8 6 4.0242 -2.5350 0.0370 9 6 4.7933 -3.3418 -0.7896 10 7 5.9385 -2.8224 -1.4092 11 6 6.7220 -3.4679 -2.3024 12 6 7.7178 -2.6249 -2.6613 13 6 7.5430 -1.4276 -1.9584 14 7 6.4772 -1.5451 -1.2080 15 6 4.4274 -4.6643 -1.0019 16 6 3.2991 -5.1766 -0.3904 17 6 2.5321 -4.3748 0.4329 18 6 1.3026 -4.9374 1.0984 19 8 0.1355 -4.4446 0.4374 20 14 1.3363 -6.7972 0.9946 21 1 0.1245 -7.3517 1.6499 22 1 1.3619 -7.2131 -0.4307 23 1 2.5492 -7.3095 1.6815 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.5739 1.7564 -0.0005 28 1 2.1207 2.2702 -0.8899 29 1 2.1207 2.2702 0.8900 30 1 2.2004 -1.9297 -1.4749 31 1 2.0450 -0.4222 -2.4086 32 1 3.5698 -0.7965 -1.5701 33 1 2.0320 -0.4334 2.4075 34 1 3.5683 -0.7821 1.5789 35 1 4.3068 -1.5059 0.2037 36 1 6.5780 -4.4748 -2.6656 37 1 8.5100 -2.8395 -3.3634 38 1 8.1783 -0.5568 -2.0238 39 1 5.0249 -5.2929 -1.6453 40 1 3.0163 -6.2056 -0.5565 41 1 1.2838 -4.6322 2.1446 42 1 -0.6951 -4.7662 0.8139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_16772184_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 17:49:41 Heat of formation + Delta-G solvation = 22.332897 kcal Electronic energy + Delta-G solvation = -23900.268963 eV Core-core repulsion = 20586.261424 eV Total energy + Delta-G solvation = -3314.007539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58579 -41.32899 -38.67431 -37.59879 -34.60504 -32.12480 -31.01444 -30.84211 -29.68005 -28.42037 -28.35187 -27.83383 -26.49876 -23.84241 -23.40726 -21.75205 -21.52530 -19.74093 -18.43090 -17.67358 -17.44986 -17.01764 -16.74841 -16.19294 -16.08136 -15.64347 -15.24972 -14.93209 -14.69780 -14.27945 -14.20599 -14.07810 -13.91992 -13.82624 -13.70026 -13.59507 -13.33457 -13.29680 -13.11101 -13.03269 -12.81688 -12.66054 -12.14767 -12.06333 -11.76354 -11.71357 -11.28871 -10.92709 -10.83480 -10.71031 -10.22330 -10.16998 -9.41717 -8.95562 -0.33525 0.19634 1.08260 1.18026 1.32704 1.48035 1.52043 1.54247 1.73282 1.80110 1.81331 1.91364 2.38371 2.49413 2.56206 3.35874 3.56109 3.67026 3.83080 3.97340 4.01132 4.12684 4.21905 4.27696 4.34341 4.52259 4.63040 4.66487 4.68215 4.69993 4.71995 4.75561 4.76197 4.81088 4.83503 4.97332 5.02299 5.11377 5.19814 5.41909 5.45027 5.53119 5.58859 5.64457 6.06426 6.26770 6.58412 6.87983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.048 2.952 3 C -0.453 4.453 4 C -0.460 4.460 5 C -0.264 4.264 6 O -0.288 6.288 7 C 0.164 3.836 8 C -0.216 4.216 9 C 0.188 3.812 10 N -0.336 5.336 11 C 0.047 3.953 12 C -0.264 4.264 13 C 0.052 3.948 14 N -0.330 5.330 15 C -0.176 4.176 16 C -0.064 4.064 17 C -0.138 4.138 18 C -0.076 4.076 19 O -0.558 6.558 20 Si 0.978 3.022 21 H -0.255 1.255 22 H -0.254 1.254 23 H -0.256 1.256 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.208 0.792 37 H 0.179 0.821 38 H 0.214 0.786 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -1.465 -0.399 1.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.241 2.759 3 C -0.561 4.561 4 C -0.565 4.565 5 C -0.383 4.383 6 O -0.200 6.200 7 C 0.116 3.884 8 C -0.236 4.236 9 C 0.095 3.905 10 N -0.112 5.112 11 C -0.094 4.094 12 C -0.292 4.292 13 C -0.134 4.134 14 N -0.149 5.149 15 C -0.196 4.196 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.185 4.185 19 O -0.367 6.367 20 Si 0.801 3.199 21 H -0.179 1.179 22 H -0.178 1.178 23 H -0.180 1.180 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.164 0.836 36 H 0.225 0.775 37 H 0.196 0.804 38 H 0.231 0.769 39 H 0.179 0.821 40 H 0.173 0.827 41 H 0.098 0.902 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.024 -1.584 0.213 1.598 hybrid contribution 0.476 0.134 -0.293 0.574 sum 0.452 -1.450 -0.079 1.521 Atomic orbital electron populations 1.26109 1.20476 1.04524 1.04818 0.78943 0.67220 0.65916 0.63870 1.26104 1.06403 1.18212 1.05396 1.26635 1.05588 1.07736 1.16563 1.28509 1.06179 0.84262 1.19397 1.86057 1.52338 1.20412 1.61151 1.18623 0.89061 0.90634 0.90045 1.20943 0.96976 1.02142 1.03576 1.17456 0.85409 0.92918 0.94755 1.46006 1.20473 1.11298 1.33470 1.23304 0.92159 1.01105 0.92879 1.22035 1.04203 0.94154 1.08809 1.24695 0.94590 1.00514 0.93651 1.77399 1.13996 0.97828 1.25677 1.20893 1.00324 0.92897 1.05523 1.20951 0.93310 1.00369 0.93545 1.18967 0.99109 0.92142 1.03747 1.24690 0.84976 1.10858 0.97963 1.86478 1.15824 1.74759 1.59603 0.85336 0.81170 0.72771 0.80633 1.17877 1.17777 1.18001 0.90399 0.91013 0.91543 0.91173 0.90591 0.89988 0.92401 0.91396 0.92039 0.85420 0.90875 0.83591 0.77537 0.80412 0.76922 0.82144 0.82661 0.90199 0.75604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -0.40 8.65 113.37 0.98 0.58 16 2 Si 1.05 -0.58 11.68 68.60 0.80 0.23 16 3 C -0.45 0.54 8.65 113.37 0.98 1.52 16 4 C -0.46 -2.25 7.03 113.37 0.80 -1.45 16 5 C -0.26 -0.32 5.31 113.37 0.60 0.28 16 6 O -0.29 -1.77 9.12 -92.47 -0.84 -2.62 16 7 C 0.16 1.17 5.14 22.49 0.12 1.29 16 8 C -0.22 -1.59 5.24 22.48 0.12 -1.48 16 9 C 0.19 1.25 6.68 38.08 0.25 1.50 16 10 N -0.34 -2.24 3.80 -187.81 -0.71 -2.95 16 11 C 0.05 0.06 10.79 83.50 0.90 0.96 16 12 C -0.26 -0.06 10.81 22.00 0.24 0.18 16 13 C 0.05 0.15 12.03 85.24 1.03 1.17 16 14 N -0.33 -2.75 11.88 -56.96 -0.68 -3.43 16 15 C -0.18 -0.43 9.45 22.40 0.21 -0.21 16 16 C -0.06 -0.17 8.65 22.24 0.19 0.02 16 17 C -0.14 -0.75 5.31 -19.75 -0.10 -0.86 16 18 C -0.08 -0.13 2.36 71.24 0.17 0.04 16 19 O -0.56 -1.26 12.86 -148.98 -1.92 -3.17 16 20 Si 0.98 -1.21 25.49 68.60 1.75 0.54 16 21 H -0.25 0.34 7.11 99.48 0.71 1.05 16 22 H -0.25 0.08 6.73 99.48 0.67 0.75 16 23 H -0.26 0.01 7.11 99.48 0.71 0.71 16 24 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 25 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 26 H 0.07 0.24 7.96 -2.39 -0.02 0.22 16 27 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 28 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.06 0.47 6.26 -2.39 -0.01 0.45 16 31 H 0.07 0.28 7.96 -2.39 -0.02 0.27 16 32 H 0.06 0.44 6.56 -2.38 -0.02 0.42 16 33 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.07 0.09 6.06 -2.39 -0.01 0.08 16 35 H 0.15 1.04 4.40 -2.91 -0.01 1.02 16 36 H 0.21 -1.31 7.06 -2.91 -0.02 -1.33 16 37 H 0.18 -0.94 8.06 -2.91 -0.02 -0.96 16 38 H 0.21 -0.83 8.06 -2.91 -0.02 -0.86 16 39 H 0.16 -0.64 6.75 -2.91 -0.02 -0.66 16 40 H 0.16 -0.26 4.88 -2.91 -0.01 -0.28 16 41 H 0.08 0.03 7.83 -2.39 -0.02 0.01 16 42 H 0.39 -2.62 8.74 -74.06 -0.65 -3.26 16 Total: 0.00 -17.08 340.23 5.99 -11.09 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.11 Total: -3.23 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 6.48 Total: 3.54 kcal Atomic # 7 Polarization: -4.99 SS G_CDS: -1.39 Total: -6.38 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -2.76 Total: -5.79 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.55 Total: 0.76 kcal Total: -17.08 5.99 -11.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16772184_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.427 kcal (2) G-P(sol) polarization free energy of solvation -17.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds