Wall clock time and date at job start Tue Mar 9 2021 12:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86296 * 109.47314 * 2 1 4 4 C 1.86307 * 109.47114 * 240.00059 * 2 1 3 5 5 C 1.86298 * 109.47089 * 120.00394 * 2 1 3 6 6 O 1.42902 * 109.47217 * 66.56980 * 5 2 1 7 7 C 1.35940 * 117.00341 * 282.08019 * 6 5 2 8 8 C 1.38721 * 119.98745 * 353.85688 * 7 6 5 9 9 C 1.38082 * 120.01059 * 179.97438 * 8 7 6 10 10 C 1.38809 * 119.99426 * 359.97438 * 9 8 7 11 11 N 1.40289 * 120.01840 * 180.02562 * 10 9 8 12 12 C 1.35200 * 126.04825 * 4.71306 * 11 10 9 13 13 C 1.35344 * 107.71206 * 179.87917 * 12 11 10 14 14 C 1.39895 * 107.93185 * 0.38544 * 13 12 11 15 15 N 1.30888 * 108.24261 * 359.76556 * 14 13 12 16 16 C 1.38860 * 119.97079 * 0.02562 * 10 9 8 17 17 C 1.38047 * 119.99150 * 0.02562 * 16 10 9 18 18 C 1.50706 * 119.99197 * 179.97438 * 17 16 10 19 19 O 1.42900 * 109.46936 * 104.97863 * 18 17 16 20 20 Si 1.86295 * 109.47332 * 344.97867 * 18 17 16 21 21 H 1.48501 * 109.47228 * 60.00066 * 20 18 17 22 22 H 1.48497 * 109.47137 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46968 * 300.00140 * 20 18 17 24 24 H 1.08994 * 109.47007 * 295.55095 * 1 2 3 25 25 H 1.09002 * 109.46745 * 55.54803 * 1 2 3 26 26 H 1.08999 * 109.47058 * 175.54628 * 1 2 3 27 27 H 1.08997 * 109.47187 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47474 * 300.00248 * 3 2 1 29 29 H 1.09004 * 109.46561 * 60.00272 * 3 2 1 30 30 H 1.08995 * 109.47148 * 305.01295 * 4 2 1 31 31 H 1.08999 * 109.46704 * 65.00820 * 4 2 1 32 32 H 1.08997 * 109.47359 * 185.00601 * 4 2 1 33 33 H 1.09000 * 109.47236 * 306.57395 * 5 2 1 34 34 H 1.09001 * 109.47091 * 186.57124 * 5 2 1 35 35 H 1.08009 * 119.99270 * 359.97365 * 8 7 6 36 36 H 1.08004 * 120.00394 * 179.72032 * 9 8 7 37 37 H 1.07998 * 126.14279 * 0.02562 * 12 11 10 38 38 H 1.07999 * 126.03083 * 180.15194 * 13 12 11 39 39 H 1.08000 * 125.87807 * 179.73594 * 14 13 12 40 40 H 1.08005 * 120.00426 * 180.02562 * 16 10 9 41 41 H 1.08997 * 109.46678 * 224.97572 * 18 17 16 42 42 H 0.96700 * 114.00078 * 299.99574 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.1377 -2.2627 1.4465 7 6 0.8522 -2.5941 1.7392 8 6 -0.0222 -1.6272 2.2134 9 6 -1.3282 -1.9631 2.5104 10 6 -1.7663 -3.2684 2.3341 11 7 -3.0932 -3.6101 2.6352 12 6 -4.0681 -2.7546 3.0166 13 6 -5.1973 -3.4759 3.2077 14 6 -4.9015 -4.8173 2.9429 15 7 -3.6410 -4.8989 2.5999 16 6 -0.8905 -4.2359 1.8594 17 6 0.4152 -3.8993 1.5638 18 6 1.3659 -4.9494 1.0492 19 8 1.5704 -4.7609 -0.3525 20 14 0.6448 -6.6407 1.3496 21 1 -0.6542 -6.7583 0.6396 22 1 1.5818 -7.6754 0.8432 23 1 0.4321 -6.8365 2.8063 24 1 -0.3633 0.4432 0.9271 25 1 -0.3633 0.5814 -0.8474 26 1 -0.3633 -1.0246 -0.0798 27 1 3.5740 1.7564 0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8901 30 1 2.0493 -1.8767 -1.5672 31 1 2.1958 -0.3152 -2.4089 32 1 3.5703 -0.9566 -1.4775 33 1 2.0278 -0.4370 2.4072 34 1 3.5677 -0.7776 1.5818 35 1 0.3186 -0.6114 2.3502 36 1 -2.0077 -1.2112 2.8838 37 1 -3.9650 -1.6871 3.1435 38 1 -6.1563 -3.0853 3.5145 39 1 -5.5939 -5.6434 3.0105 40 1 -1.2309 -5.2516 1.7216 41 1 2.3192 -4.8630 1.5704 42 1 0.7625 -4.8245 -0.8799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_16951038_3095236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:57 Heat of formation + Delta-G solvation = 15.862795 kcal Electronic energy + Delta-G solvation = -23652.216454 eV Core-core repulsion = 20337.928351 eV Total energy + Delta-G solvation = -3314.288104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.50730 -41.35255 -38.69873 -37.61931 -34.06877 -33.00834 -31.22603 -29.82666 -29.75679 -28.50500 -28.45272 -27.70305 -26.80855 -24.16558 -23.33554 -21.66164 -21.35518 -19.56167 -18.75309 -17.95572 -17.14988 -16.79850 -16.57206 -16.13075 -15.79091 -15.62180 -15.45240 -15.12334 -14.63494 -14.45601 -14.31336 -14.06843 -13.99439 -13.94018 -13.74876 -13.64434 -13.41555 -13.33313 -13.19811 -13.03063 -12.99907 -12.55248 -12.10215 -11.95931 -11.68350 -11.62839 -11.28301 -11.01553 -10.89489 -10.46902 -10.33740 -10.14860 -9.91843 -8.63184 -0.17192 0.02265 1.14122 1.19509 1.39948 1.41366 1.48974 1.59251 1.62087 1.68354 1.84507 1.97666 2.37237 2.43623 2.56972 3.31329 3.49859 3.64949 3.74447 3.80764 3.96609 4.00901 4.12464 4.26449 4.47091 4.52128 4.55670 4.57888 4.59469 4.66524 4.68168 4.69443 4.71651 4.79239 4.84328 4.92720 5.01101 5.05307 5.13249 5.34176 5.37514 5.44477 5.60277 5.66333 6.11207 6.32697 6.61965 6.66018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 0.989 3.011 3 C -0.449 4.449 4 C -0.442 4.442 5 C -0.248 4.248 6 O -0.275 6.275 7 C 0.145 3.855 8 C -0.180 4.180 9 C -0.093 4.093 10 C 0.125 3.875 11 N -0.319 5.319 12 C 0.052 3.948 13 C -0.261 4.261 14 C 0.056 3.944 15 N -0.295 5.295 16 C -0.091 4.091 17 C -0.132 4.132 18 C -0.065 4.065 19 O -0.530 6.530 20 Si 0.937 3.063 21 H -0.248 1.248 22 H -0.250 1.250 23 H -0.248 1.248 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.190 0.810 40 H 0.145 0.855 41 H 0.122 0.878 42 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 4.180 0.513 4.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.185 2.815 3 C -0.557 4.557 4 C -0.550 4.550 5 C -0.369 4.369 6 O -0.187 6.187 7 C 0.098 3.902 8 C -0.199 4.199 9 C -0.114 4.114 10 C 0.033 3.967 11 N -0.095 5.095 12 C -0.091 4.091 13 C -0.290 4.290 14 C -0.130 4.130 15 N -0.114 5.114 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.176 4.176 19 O -0.334 6.334 20 Si 0.760 3.240 21 H -0.172 1.172 22 H -0.173 1.173 23 H -0.171 1.171 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.195 0.805 38 H 0.172 0.828 39 H 0.207 0.793 40 H 0.162 0.838 41 H 0.139 0.861 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.389 2.532 0.470 2.604 hybrid contribution -1.291 1.291 0.327 1.855 sum -0.901 3.823 0.797 4.008 Atomic orbital electron populations 1.26454 1.19787 1.04946 1.04544 0.79848 0.67985 0.66582 0.67088 1.26079 1.06534 1.18253 1.04826 1.25982 1.06386 1.08542 1.14114 1.28240 1.07075 0.86029 1.15540 1.86132 1.23582 1.26016 1.82989 1.18777 0.84494 0.92762 0.94183 1.21199 0.93553 1.00388 1.04722 1.20586 0.96249 0.93867 1.00713 1.17255 0.81333 0.94040 1.04072 1.45836 1.07040 1.05688 1.50932 1.22628 0.88427 0.97628 1.00442 1.21637 0.99945 0.93301 1.14099 1.24103 0.93158 0.98080 0.97696 1.77464 1.10892 0.98502 1.24579 1.20680 0.91594 0.99943 0.98844 1.19478 0.94345 0.93867 1.05646 1.24778 1.03112 1.04750 0.84988 1.86567 1.36194 1.95202 1.15478 0.85883 0.79893 0.76241 0.81992 1.17189 1.17339 1.17099 0.91067 0.90959 0.90703 0.90942 0.90680 0.91114 0.90329 0.91340 0.91145 0.91032 0.87103 0.83526 0.84681 0.80550 0.82756 0.79274 0.83762 0.86060 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.94 7.04 101.05 0.71 1.65 16 2 Si 0.99 -2.85 11.68 -169.99 -1.99 -4.84 16 3 C -0.45 1.16 8.65 101.05 0.87 2.03 16 4 C -0.44 0.32 8.65 101.05 0.87 1.20 16 5 C -0.25 0.45 5.31 101.05 0.54 0.99 16 6 O -0.28 -0.28 9.12 -19.55 -0.18 -0.46 16 7 C 0.15 0.15 5.77 -39.21 -0.23 -0.08 16 8 C -0.18 0.10 5.63 -39.46 -0.22 -0.13 16 9 C -0.09 0.02 9.45 -39.43 -0.37 -0.36 16 10 C 0.13 0.27 6.68 -83.54 -0.56 -0.29 16 11 N -0.32 -0.93 3.80 -10.67 -0.04 -0.98 16 12 C 0.05 0.03 10.79 -17.10 -0.18 -0.15 16 13 C -0.26 -0.13 10.81 -39.99 -0.43 -0.56 16 14 C 0.06 0.09 12.03 -17.33 -0.21 -0.12 16 15 N -0.29 -1.23 11.88 30.64 0.36 -0.87 16 16 C -0.09 -0.21 8.27 -39.42 -0.33 -0.54 16 17 C -0.13 -0.21 5.27 -104.50 -0.55 -0.76 16 18 C -0.07 -0.07 2.37 36.01 0.09 0.02 16 19 O -0.53 -0.64 12.88 -35.23 -0.45 -1.09 16 20 Si 0.94 1.11 25.49 -169.99 -4.33 -3.22 16 21 H -0.25 -0.38 6.73 56.52 0.38 0.00 16 22 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 23 H -0.25 -0.55 7.11 56.52 0.40 -0.15 16 24 H 0.07 -0.22 6.50 -51.93 -0.34 -0.55 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.06 6.55 -51.93 -0.34 -0.40 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 29 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 30 H 0.08 0.04 7.96 -51.93 -0.41 -0.38 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 33 H 0.07 -0.22 6.06 -51.93 -0.31 -0.54 16 34 H 0.11 -0.30 7.96 -51.93 -0.41 -0.72 16 35 H 0.15 -0.42 4.23 -52.48 -0.22 -0.65 16 36 H 0.14 -0.36 6.76 -52.48 -0.35 -0.71 16 37 H 0.18 -0.51 7.06 -52.49 -0.37 -0.88 16 38 H 0.15 -0.29 8.06 -52.49 -0.42 -0.71 16 39 H 0.19 -0.29 8.06 -52.49 -0.42 -0.71 16 40 H 0.15 0.40 4.53 -52.48 -0.24 0.16 16 41 H 0.12 0.09 7.83 -51.93 -0.41 -0.31 16 42 H 0.37 -0.72 8.70 45.56 0.40 -0.32 16 LS Contribution 340.54 15.07 5.13 5.13 Total: 0.00 -7.04 340.54 -6.65 -13.69 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -5.16 Total: -10.28 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.00 Total: 2.91 kcal Atomic # 7 Polarization: -2.17 SS G_CDS: 0.32 Total: -1.84 kcal Atomic # 8 Polarization: -0.92 SS G_CDS: -0.63 Total: -1.55 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -6.32 Total: -8.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -7.04 -6.65 -13.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_16951038_3095236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.556 kcal (2) G-P(sol) polarization free energy of solvation -7.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds