Wall clock time and date at job start Tue Mar 9 2021 13:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99730 * 2 1 4 4 C 1.38711 * 120.05594 * 0.02710 * 3 2 1 5 5 C 1.38175 * 119.94297 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.05574 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94273 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46853 * 244.99833 * 7 6 5 9 9 Si 1.86300 * 109.47194 * 4.99789 * 7 6 5 10 10 H 1.48500 * 109.46786 * 180.02562 * 9 7 6 11 11 H 1.48499 * 109.47029 * 300.00194 * 9 7 6 12 12 H 1.48500 * 109.47072 * 60.00099 * 9 7 6 13 13 C 1.38294 * 120.11095 * 359.74334 * 6 5 4 14 14 C 1.38120 * 120.05313 * 0.50711 * 13 6 5 15 15 C 1.50705 * 120.02647 * 179.77063 * 14 13 6 16 16 S 1.81400 * 109.46977 * 269.72441 * 15 14 13 17 17 C 1.81394 * 102.99896 * 175.57710 * 16 15 14 18 18 Si 1.86301 * 109.47279 * 184.42308 * 17 16 15 19 19 C 1.86302 * 109.46980 * 59.04628 * 18 17 16 20 20 C 1.86304 * 109.47455 * 179.04729 * 18 17 16 21 21 C 1.86303 * 109.47104 * 299.04937 * 18 17 16 22 22 H 1.09000 * 109.47252 * 299.99660 * 1 2 3 23 23 H 1.08999 * 109.47519 * 59.99217 * 1 2 3 24 24 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03026 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.96885 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47129 * 125.00311 * 7 6 5 28 28 H 0.96703 * 114.00532 * 179.97438 * 8 7 6 29 29 H 1.07996 * 119.97178 * 180.27406 * 13 6 5 30 30 H 1.09004 * 109.46841 * 149.72549 * 15 14 13 31 31 H 1.08995 * 109.46936 * 29.72361 * 15 14 13 32 32 H 1.09000 * 109.47454 * 304.42111 * 17 16 15 33 33 H 1.09006 * 109.47405 * 64.42319 * 17 16 15 34 34 H 1.09005 * 109.47186 * 60.00424 * 19 18 17 35 35 H 1.09005 * 109.47056 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47234 * 299.99777 * 19 18 17 37 37 H 1.09004 * 109.46784 * 59.99724 * 20 18 17 38 38 H 1.08997 * 109.46996 * 180.02562 * 20 18 17 39 39 H 1.08994 * 109.46850 * 300.00508 * 20 18 17 40 40 H 1.09001 * 109.47243 * 57.55629 * 21 18 17 41 41 H 1.08997 * 109.46877 * 177.55388 * 21 18 17 42 42 H 1.08999 * 109.46898 * 297.55568 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3749 0.0006 5 6 1.9212 3.6049 0.0011 6 6 3.3018 3.6759 0.0005 7 6 3.9859 5.0187 0.0005 8 8 4.7089 5.1848 -1.2207 9 14 2.7088 6.3663 0.1544 10 1 3.3829 7.6895 0.1538 11 1 1.7681 6.2900 -0.9921 12 1 1.9574 6.1936 1.4236 13 6 4.0562 2.5168 0.0048 14 6 3.4315 1.2850 -0.0010 15 6 4.2542 0.0223 -0.0015 16 16 4.5835 -0.4840 -1.7120 17 6 5.6790 -1.9156 -1.5101 18 14 6.2440 -2.5063 -3.1842 19 6 7.1401 -1.1272 -4.0594 20 6 7.3920 -3.9587 -2.9755 21 6 4.7649 -3.0237 -4.1919 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2130 2.3200 0.0006 26 1 1.3343 4.5114 0.0020 27 1 4.6764 5.0746 0.8420 28 1 5.1750 6.0293 -1.2903 29 1 5.1345 2.5750 0.0088 30 1 3.7069 -0.7681 0.5124 31 1 5.1983 0.2036 0.5119 32 1 6.5457 -1.6289 -0.9145 33 1 5.1400 -2.7172 -1.0049 34 1 8.0055 -0.8245 -3.4698 35 1 7.4703 -1.4727 -5.0391 36 1 6.4684 -0.2775 -4.1816 37 1 6.8677 -4.7655 -2.4633 38 1 7.7229 -4.3039 -3.9549 39 1 8.2573 -3.6560 -2.3858 40 1 4.0726 -2.1862 -4.2775 41 1 5.0913 -3.3282 -5.1863 42 1 4.2655 -3.8593 -3.7016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_17541628_759148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:24 Heat of formation + Delta-G solvation = -95.416274 kcal Electronic energy + Delta-G solvation = -20040.968615 eV Core-core repulsion = 17042.773819 eV Total energy + Delta-G solvation = -2998.194796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30833 -38.98551 -37.26507 -34.08663 -31.76715 -29.99291 -29.01045 -28.61915 -28.41235 -28.30261 -27.89162 -26.03697 -23.07327 -21.67720 -19.09378 -18.46170 -17.60961 -17.07801 -16.68773 -16.34822 -15.93291 -15.62425 -15.18157 -15.08328 -14.79302 -14.61196 -14.47109 -14.15940 -13.97656 -13.83648 -13.77371 -13.55574 -13.40964 -13.31059 -13.10647 -13.08140 -12.99733 -12.82477 -12.38452 -12.18345 -12.04787 -11.81064 -11.64062 -11.19343 -10.96008 -10.75374 -10.64427 -10.30419 -9.74051 -9.03266 -8.34693 0.06350 0.39266 1.00923 1.15385 1.42892 1.49188 1.53367 1.88823 1.90037 1.90861 2.06946 2.31114 2.62881 2.73503 3.45835 3.62363 3.75269 3.91606 4.09955 4.17029 4.23313 4.24245 4.31369 4.38892 4.46935 4.58141 4.61114 4.70608 4.70900 4.78860 4.79563 4.85685 4.87702 4.90780 4.96147 5.00034 5.27258 5.29994 5.45923 5.53495 5.64224 5.67900 5.76179 6.39050 6.62172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.150 3.850 4 C -0.203 4.203 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.075 4.075 8 O -0.543 6.543 9 Si 0.944 3.056 10 H -0.256 1.256 11 H -0.248 1.248 12 H -0.250 1.250 13 C -0.033 4.033 14 C -0.107 4.107 15 C -0.042 4.042 16 S -0.227 6.227 17 C -0.387 4.387 18 Si 1.019 2.981 19 C -0.445 4.445 20 C -0.441 4.441 21 C -0.446 4.446 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.379 0.621 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 0.287 1.975 1.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.103 3.897 4 C -0.222 4.222 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.186 4.186 8 O -0.349 6.349 9 Si 0.767 3.233 10 H -0.181 1.181 11 H -0.172 1.172 12 H -0.174 1.174 13 C -0.053 4.053 14 C -0.109 4.109 15 C -0.189 4.189 16 S 0.002 5.998 17 C -0.580 4.580 18 Si 1.214 2.786 19 C -0.553 4.553 20 C -0.550 4.550 21 C -0.554 4.554 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.093 0.907 28 H 0.226 0.774 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.291 0.562 1.049 1.756 hybrid contribution 0.621 -0.163 1.409 1.548 sum -0.670 0.399 2.458 2.579 Atomic orbital electron populations 1.23123 0.78049 1.04330 1.01500 1.86114 1.21537 1.26317 1.88001 1.18805 0.91515 0.84512 0.94917 1.21119 1.00292 0.91723 1.09039 1.20800 0.93754 0.97458 0.97565 1.19085 0.92838 0.93920 1.05482 1.24634 1.02415 1.01630 0.89900 1.86540 1.68937 1.42392 1.37025 0.85797 0.79034 0.77030 0.81483 1.18062 1.17154 1.17385 1.20694 1.00170 0.89730 0.94667 1.18589 0.90155 0.94281 1.07844 1.22164 1.01803 0.97816 0.97149 1.87046 1.63655 1.37738 1.11361 1.28041 1.04508 1.02157 1.23259 0.78822 0.67834 0.67743 0.64222 1.26070 1.08127 1.13482 1.07603 1.26040 1.10287 1.13741 1.04979 1.26074 1.14593 1.05907 1.08788 0.92520 0.92367 0.87948 0.84777 0.85893 0.90719 0.77390 0.84712 0.88952 0.89445 0.88826 0.88868 0.91295 0.91285 0.90482 0.91149 0.90732 0.91142 0.90591 0.91235 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 2 O -0.31 -0.76 9.54 -19.43 -0.19 -0.95 16 3 C 0.15 0.44 6.66 -39.22 -0.26 0.18 16 4 C -0.20 -0.37 9.04 -39.43 -0.36 -0.73 16 5 C -0.08 -0.15 8.66 -39.60 -0.34 -0.49 16 6 C -0.11 -0.25 5.38 -104.60 -0.56 -0.81 16 7 C -0.08 -0.01 2.79 36.00 0.10 0.09 16 8 O -0.54 -0.44 12.81 -35.23 -0.45 -0.89 16 9 Si 0.94 -0.25 25.13 -169.99 -4.27 -4.52 16 10 H -0.26 0.05 7.11 56.52 0.40 0.45 16 11 H -0.25 -0.28 7.04 56.52 0.40 0.11 16 12 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 13 C -0.03 -0.08 9.34 -39.60 -0.37 -0.45 16 14 C -0.11 -0.31 5.15 -104.47 -0.54 -0.85 16 15 C -0.04 -0.09 5.85 36.01 0.21 0.12 16 16 S -0.23 -0.61 20.82 -107.50 -2.24 -2.85 16 17 C -0.39 -0.01 5.14 101.05 0.52 0.51 16 18 Si 1.02 -1.24 12.30 -169.99 -2.09 -3.33 16 19 C -0.44 -0.06 8.65 101.05 0.87 0.81 16 20 C -0.44 0.51 8.65 101.05 0.87 1.39 16 21 C -0.45 -0.09 8.65 101.05 0.87 0.78 16 22 H 0.06 -0.12 7.66 -51.93 -0.40 -0.51 16 23 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16 24 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 25 H 0.13 -0.06 6.30 -52.49 -0.33 -0.39 16 26 H 0.12 0.05 4.86 -52.49 -0.25 -0.20 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 29 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 30 H 0.09 0.20 7.53 -51.92 -0.39 -0.19 16 31 H 0.09 0.06 8.08 -51.93 -0.42 -0.36 16 32 H 0.09 -0.07 7.96 -51.92 -0.41 -0.49 16 33 H 0.09 -0.04 7.96 -51.92 -0.41 -0.45 16 34 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 35 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 36 H 0.08 0.10 7.96 -51.93 -0.41 -0.31 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 0.10 7.96 -51.93 -0.41 -0.31 16 41 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 42 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 LS Contribution 358.24 15.07 5.40 5.40 Total: 0.00 -5.81 358.24 -8.23 -14.04 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -6.40 Total: -8.42 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 2.01 Total: 1.52 kcal Atomic # 8 Polarization: -1.20 SS G_CDS: -0.64 Total: -1.84 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -6.36 Total: -7.85 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -2.24 Total: -2.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -5.81 -8.23 -14.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_17541628_759148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.375 kcal (2) G-P(sol) polarization free energy of solvation -5.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds