Wall clock time and date at job start Tue Mar 9 2021 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99730 * 2 1 4 4 C 1.38711 * 120.05594 * 0.02710 * 3 2 1 5 5 C 1.38175 * 119.94297 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.05574 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94273 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46853 * 244.99833 * 7 6 5 9 9 Si 1.86300 * 109.47194 * 4.99789 * 7 6 5 10 10 H 1.48500 * 109.46786 * 180.02562 * 9 7 6 11 11 H 1.48499 * 109.47029 * 300.00194 * 9 7 6 12 12 H 1.48500 * 109.47072 * 60.00099 * 9 7 6 13 13 C 1.38294 * 120.11095 * 359.74334 * 6 5 4 14 14 C 1.38120 * 120.05313 * 0.50711 * 13 6 5 15 15 C 1.50705 * 120.02647 * 179.77063 * 14 13 6 16 16 S 1.81400 * 109.46977 * 269.72441 * 15 14 13 17 17 C 1.81394 * 102.99896 * 175.57710 * 16 15 14 18 18 Si 1.86301 * 109.47279 * 184.42308 * 17 16 15 19 19 C 1.86302 * 109.46980 * 59.04628 * 18 17 16 20 20 C 1.86304 * 109.47455 * 179.04729 * 18 17 16 21 21 C 1.86303 * 109.47104 * 299.04937 * 18 17 16 22 22 H 1.09000 * 109.47252 * 299.99660 * 1 2 3 23 23 H 1.08999 * 109.47519 * 59.99217 * 1 2 3 24 24 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.03026 * 359.97438 * 4 3 2 26 26 H 1.07996 * 119.96885 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47129 * 125.00311 * 7 6 5 28 28 H 0.96703 * 114.00532 * 179.97438 * 8 7 6 29 29 H 1.07996 * 119.97178 * 180.27406 * 13 6 5 30 30 H 1.09004 * 109.46841 * 149.72549 * 15 14 13 31 31 H 1.08995 * 109.46936 * 29.72361 * 15 14 13 32 32 H 1.09000 * 109.47454 * 304.42111 * 17 16 15 33 33 H 1.09006 * 109.47405 * 64.42319 * 17 16 15 34 34 H 1.09005 * 109.47186 * 60.00424 * 19 18 17 35 35 H 1.09005 * 109.47056 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47234 * 299.99777 * 19 18 17 37 37 H 1.09004 * 109.46784 * 59.99724 * 20 18 17 38 38 H 1.08997 * 109.46996 * 180.02562 * 20 18 17 39 39 H 1.08994 * 109.46850 * 300.00508 * 20 18 17 40 40 H 1.09001 * 109.47243 * 57.55629 * 21 18 17 41 41 H 1.08997 * 109.46877 * 177.55388 * 21 18 17 42 42 H 1.08999 * 109.46898 * 297.55568 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3749 0.0006 5 6 1.9212 3.6049 0.0011 6 6 3.3018 3.6759 0.0005 7 6 3.9859 5.0187 0.0005 8 8 4.7089 5.1848 -1.2207 9 14 2.7088 6.3663 0.1544 10 1 3.3829 7.6895 0.1538 11 1 1.7681 6.2900 -0.9921 12 1 1.9574 6.1936 1.4236 13 6 4.0562 2.5168 0.0048 14 6 3.4315 1.2850 -0.0010 15 6 4.2542 0.0223 -0.0015 16 16 4.5835 -0.4840 -1.7120 17 6 5.6790 -1.9156 -1.5101 18 14 6.2440 -2.5063 -3.1842 19 6 7.1401 -1.1272 -4.0594 20 6 7.3920 -3.9587 -2.9755 21 6 4.7649 -3.0237 -4.1919 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2130 2.3200 0.0006 26 1 1.3343 4.5114 0.0020 27 1 4.6764 5.0746 0.8420 28 1 5.1750 6.0293 -1.2903 29 1 5.1345 2.5750 0.0088 30 1 3.7069 -0.7681 0.5124 31 1 5.1983 0.2036 0.5119 32 1 6.5457 -1.6289 -0.9145 33 1 5.1400 -2.7172 -1.0049 34 1 8.0055 -0.8245 -3.4698 35 1 7.4703 -1.4727 -5.0391 36 1 6.4684 -0.2775 -4.1816 37 1 6.8677 -4.7655 -2.4633 38 1 7.7229 -4.3039 -3.9549 39 1 8.2573 -3.6560 -2.3858 40 1 4.0726 -2.1862 -4.2775 41 1 5.0913 -3.3282 -5.1863 42 1 4.2655 -3.8593 -3.7016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_17541628_759148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:39:23 Heat of formation + Delta-G solvation = -87.652609 kcal Electronic energy + Delta-G solvation = -20040.631957 eV Core-core repulsion = 17042.773819 eV Total energy + Delta-G solvation = -2997.858138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 300.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39665 -39.04288 -37.29033 -34.19249 -31.84875 -29.98102 -29.03103 -28.58340 -28.33602 -28.30816 -27.97120 -26.07038 -23.16529 -21.76800 -19.17531 -18.45739 -17.68191 -17.21021 -16.73776 -16.42408 -15.97220 -15.67807 -15.21831 -15.13491 -14.80203 -14.65496 -14.47896 -14.12211 -13.99173 -13.83217 -13.79514 -13.58024 -13.43110 -13.29887 -13.10889 -13.08729 -12.99094 -12.82036 -12.43245 -12.18631 -12.07047 -11.84013 -11.67400 -11.26320 -10.95940 -10.74401 -10.65548 -10.28375 -9.86042 -9.14574 -8.53715 -0.06487 0.27264 0.92977 1.17329 1.45530 1.50481 1.54699 1.83239 1.90418 1.94832 2.15184 2.28834 2.62230 2.66182 3.47765 3.53414 3.68527 3.90133 4.08322 4.09991 4.25308 4.34157 4.35395 4.36156 4.42906 4.55103 4.70013 4.70792 4.78965 4.81468 4.82252 4.85619 4.86220 4.87723 4.90458 4.95876 5.16039 5.19194 5.41608 5.55805 5.64546 5.66500 5.67148 6.32440 6.84981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.136 3.864 4 C -0.208 4.208 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.077 4.077 8 O -0.563 6.563 9 Si 0.977 3.023 10 H -0.254 1.254 11 H -0.271 1.271 12 H -0.256 1.256 13 C -0.042 4.042 14 C -0.121 4.121 15 C -0.034 4.034 16 S -0.273 6.273 17 C -0.387 4.387 18 Si 1.079 2.921 19 C -0.460 4.460 20 C -0.445 4.445 21 C -0.462 4.462 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.153 0.847 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.397 0.603 29 H 0.141 0.859 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 0.121 2.478 2.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.088 3.912 4 C -0.226 4.226 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.187 4.187 8 O -0.372 6.372 9 Si 0.801 3.199 10 H -0.178 1.178 11 H -0.196 1.196 12 H -0.180 1.180 13 C -0.062 4.062 14 C -0.122 4.122 15 C -0.181 4.181 16 S -0.044 6.044 17 C -0.578 4.578 18 Si 1.270 2.730 19 C -0.566 4.566 20 C -0.554 4.554 21 C -0.568 4.568 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.134 0.866 25 H 0.170 0.830 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.247 0.753 29 H 0.159 0.841 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.824 0.424 1.553 1.809 hybrid contribution 0.445 -0.114 1.222 1.305 sum -0.379 0.310 2.775 2.818 Atomic orbital electron populations 1.23349 0.76545 1.05542 1.02277 1.86086 1.23218 1.26360 1.88062 1.18989 0.91809 0.85005 0.95391 1.21377 1.01321 0.91434 1.08474 1.21042 0.94045 0.98000 0.97657 1.19412 0.93193 0.94858 1.05068 1.24716 1.03022 1.00625 0.90373 1.86490 1.69313 1.44030 1.37407 0.85329 0.77946 0.76685 0.79937 1.17805 1.19630 1.18027 1.20836 1.00590 0.89827 0.94965 1.18802 0.90580 0.94758 1.08109 1.22126 1.02138 0.97414 0.96373 1.87199 1.64835 1.39655 1.12727 1.28270 1.04118 1.00751 1.24705 0.77924 0.66197 0.66576 0.62322 1.26265 1.08287 1.13816 1.08256 1.26056 1.10405 1.13593 1.05357 1.26286 1.15428 1.05483 1.09606 0.91367 0.91917 0.86601 0.82960 0.84818 0.88728 0.75296 0.84124 0.89400 0.88353 0.87737 0.88246 0.91013 0.90993 0.91992 0.90711 0.90453 0.90600 0.92113 0.90945 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.32 -1.91 9.54 -92.44 -0.88 -2.80 16 3 C 0.14 0.93 6.66 22.51 0.15 1.08 16 4 C -0.21 -0.90 9.04 22.37 0.20 -0.70 16 5 C -0.09 -0.40 8.66 22.26 0.19 -0.21 16 6 C -0.12 -0.62 5.38 -19.85 -0.11 -0.73 16 7 C -0.08 -0.02 2.79 71.24 0.20 0.18 16 8 O -0.56 -0.93 12.81 -148.98 -1.91 -2.84 16 9 Si 0.98 -0.64 25.13 68.60 1.72 1.09 16 10 H -0.25 0.31 7.11 99.48 0.71 1.01 16 11 H -0.27 -0.81 7.04 99.48 0.70 -0.11 16 12 H -0.26 -0.04 7.11 99.48 0.71 0.66 16 13 C -0.04 -0.25 9.34 22.26 0.21 -0.04 16 14 C -0.12 -0.84 5.15 -19.77 -0.10 -0.95 16 15 C -0.03 -0.17 5.85 71.24 0.42 0.24 16 16 S -0.27 -1.78 20.82 -56.49 -1.18 -2.95 16 17 C -0.39 0.00 5.14 113.37 0.58 0.58 16 18 Si 1.08 -2.76 12.30 68.60 0.84 -1.92 16 19 C -0.46 -0.34 8.65 113.37 0.98 0.64 16 20 C -0.44 1.56 8.65 113.37 0.98 2.54 16 21 C -0.46 -0.47 8.65 113.37 0.98 0.51 16 22 H 0.07 -0.28 7.66 -2.39 -0.02 -0.30 16 23 H 0.06 -0.17 7.66 -2.39 -0.02 -0.19 16 24 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H 0.15 -0.10 6.30 -2.91 -0.02 -0.12 16 26 H 0.13 0.18 4.86 -2.91 -0.01 0.17 16 27 H 0.09 -0.39 7.96 -2.39 -0.02 -0.41 16 28 H 0.40 -3.04 8.74 -74.06 -0.65 -3.69 16 29 H 0.14 0.49 8.06 -2.91 -0.02 0.47 16 30 H 0.09 0.48 7.53 -2.39 -0.02 0.47 16 31 H 0.10 0.20 8.08 -2.39 -0.02 0.18 16 32 H 0.10 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.10 -0.11 7.96 -2.39 -0.02 -0.13 16 34 H 0.07 0.00 7.96 -2.38 -0.02 -0.02 16 35 H 0.07 -0.01 7.96 -2.38 -0.02 -0.03 16 36 H 0.06 0.24 7.96 -2.39 -0.02 0.23 16 37 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 38 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 40 H 0.06 0.26 7.96 -2.39 -0.02 0.24 16 41 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 42 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 Total: 0.00 -13.99 358.24 5.49 -8.50 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: 1.09 Total: -3.33 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.80 Total: 4.26 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -2.79 Total: -5.63 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.57 Total: -0.83 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -1.18 Total: -2.95 kcal Total: -13.99 5.49 -8.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_17541628_759148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.155 kcal (2) G-P(sol) polarization free energy of solvation -13.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds