Wall clock time and date at job start Tue Mar 9 2021 13:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47272 * 2 1 4 4 C 1.53003 * 109.47129 * 239.99655 * 2 1 3 5 5 Si 1.86305 * 109.47146 * 119.99711 * 2 1 3 6 6 C 1.86295 * 109.47332 * 300.00078 * 5 2 1 7 7 C 1.86298 * 109.46921 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46989 * 59.99974 * 5 2 1 9 9 C 1.42892 * 113.99988 * 180.02562 * 8 5 2 10 10 C 1.53002 * 109.47219 * 179.97438 * 9 8 5 11 11 S 1.81404 * 109.47130 * 179.97438 * 10 9 8 12 12 C 1.81399 * 102.99905 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47173 * 179.97438 * 12 11 10 14 14 C 1.33395 * 122.53872 * 270.25717 * 13 12 11 15 15 S 1.75886 * 109.59043 * 180.24116 * 14 13 12 16 16 C 1.75885 * 90.97065 * 359.73076 * 15 14 13 17 17 C 1.50702 * 125.19995 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47305 * 120.02010 * 17 16 15 19 19 Si 1.86301 * 109.47375 * 0.02562 * 17 16 15 20 20 H 1.48501 * 109.47068 * 60.00389 * 19 17 16 21 21 H 1.48501 * 109.47140 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46965 * 299.99955 * 19 17 16 23 23 C 1.33388 * 109.59458 * 359.97438 * 16 15 14 24 24 H 1.09006 * 109.47068 * 300.00577 * 1 2 3 25 25 H 1.08996 * 109.47423 * 59.99934 * 1 2 3 26 26 H 1.08997 * 109.47438 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46902 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46476 * 299.99615 * 3 2 1 29 29 H 1.08994 * 109.47154 * 59.99900 * 3 2 1 30 30 H 1.08997 * 109.46816 * 300.00204 * 4 2 1 31 31 H 1.08996 * 109.46632 * 59.99927 * 4 2 1 32 32 H 1.08997 * 109.47112 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47592 * 180.02562 * 6 5 2 34 34 H 1.09008 * 109.47048 * 300.00021 * 6 5 2 35 35 H 1.09005 * 109.47251 * 59.99534 * 6 5 2 36 36 H 1.09006 * 109.47246 * 299.99683 * 7 5 2 37 37 H 1.08992 * 109.47492 * 60.00373 * 7 5 2 38 38 H 1.09005 * 109.46956 * 180.02562 * 7 5 2 39 39 H 1.09000 * 109.47194 * 59.99683 * 9 8 5 40 40 H 1.09003 * 109.47262 * 299.99685 * 9 8 5 41 41 H 1.08995 * 109.46786 * 60.00020 * 10 9 8 42 42 H 1.08995 * 109.47115 * 300.00127 * 10 9 8 43 43 H 1.09000 * 109.47201 * 59.99983 * 12 11 10 44 44 H 1.08991 * 109.47039 * 300.00057 * 12 11 10 45 45 H 1.07998 * 125.20353 * 359.97100 * 14 13 12 46 46 H 1.09002 * 109.46625 * 240.01886 * 17 16 15 47 47 H 0.96699 * 113.99978 * 300.00272 * 18 17 16 48 48 H 1.08002 * 122.53671 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8788 1.5208 8 8 1.6073 -2.4159 1.5213 9 6 2.0284 -3.1812 2.6521 10 6 1.4626 -4.5989 2.5478 11 16 1.9979 -5.5707 3.9830 12 6 1.2412 -7.1919 3.6833 13 6 1.5993 -8.1290 4.8078 14 6 2.6904 -8.8960 4.7828 15 16 2.7714 -9.8546 6.2552 16 6 1.2790 -9.1327 6.8428 17 6 0.6161 -9.4564 8.1569 18 8 0.5292 -8.2717 8.9512 19 14 1.6220 -10.7376 9.0611 20 1 2.9867 -10.2086 9.3123 21 1 0.9684 -11.0569 10.3557 22 1 1.7124 -11.9688 8.2358 23 6 0.8238 -8.2550 5.9475 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 1.8937 -0.5134 3.9323 34 1 1.8934 1.0278 3.0423 35 1 0.4400 0.0001 3.0423 36 1 4.3769 -1.3930 0.6308 37 1 4.3777 0.1486 1.5205 38 1 4.3773 -1.3930 2.4106 39 1 1.6636 -2.7111 3.5653 40 1 3.1173 -3.2252 2.6760 41 1 1.8271 -5.0693 1.6346 42 1 0.3738 -4.5547 2.5241 43 1 1.6112 -7.5970 2.7415 44 1 0.1579 -7.0832 3.6314 45 1 3.4112 -8.9270 3.9792 46 1 -0.3856 -9.8445 7.9725 47 1 1.3853 -7.8708 9.1546 48 1 -0.0840 -7.6896 6.0979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18313520_18345020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:19 Heat of formation + Delta-G solvation = -101.095989 kcal Electronic energy + Delta-G solvation = -23308.754606 eV Core-core repulsion = 19932.852909 eV Total energy + Delta-G solvation = -3375.901697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.116 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.63999 -38.19855 -37.64106 -36.83264 -32.53196 -31.83658 -29.38029 -29.09938 -29.07220 -27.83817 -27.38320 -26.99826 -24.16004 -22.71110 -20.42644 -20.20056 -18.67787 -18.09951 -17.76361 -16.99431 -16.76179 -16.36856 -16.07114 -15.95734 -15.60149 -15.49451 -14.87464 -14.84609 -14.66062 -14.57791 -14.38644 -13.98918 -13.95558 -13.63220 -13.45409 -13.39868 -13.22157 -13.12722 -13.05616 -12.95341 -12.94384 -12.86956 -12.45903 -12.39073 -12.36282 -12.11327 -11.78681 -11.72387 -11.56250 -11.49010 -11.36492 -11.05659 -10.55424 -10.35362 -10.06578 -9.71920 -9.40357 -8.69208 -0.21942 0.43500 0.49107 0.75730 1.13122 1.35001 1.39799 1.50713 1.68960 1.77769 1.86430 1.95433 2.09811 2.49108 3.42282 3.68270 3.84763 3.92084 3.92142 4.03634 4.12150 4.12719 4.25290 4.36338 4.46616 4.53164 4.55661 4.65711 4.66836 4.68430 4.73392 4.77283 4.77537 4.80876 4.82939 4.83437 5.00409 5.03906 5.09475 5.09972 5.19428 5.28263 5.33050 5.39598 5.40049 5.41174 5.47547 5.58386 5.63167 6.61237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.316 2.684 6 C -0.519 4.519 7 C -0.519 4.519 8 O -0.635 6.635 9 C 0.096 3.904 10 C -0.089 4.089 11 S -0.274 6.274 12 C -0.015 4.015 13 C -0.102 4.102 14 C -0.180 4.180 15 S 0.083 5.917 16 C -0.223 4.223 17 C -0.034 4.034 18 O -0.546 6.546 19 Si 0.919 3.081 20 H -0.242 1.242 21 H -0.241 1.241 22 H -0.243 1.243 23 C -0.094 4.094 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.184 0.816 46 H 0.136 0.864 47 H 0.389 0.611 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -0.657 -0.838 1.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.621 4.621 7 C -0.620 4.620 8 O -0.594 6.594 9 C 0.019 3.981 10 C -0.238 4.238 11 S -0.046 6.046 12 C -0.164 4.164 13 C -0.115 4.115 14 C -0.318 4.318 15 S 0.348 5.652 16 C -0.340 4.340 17 C -0.147 4.147 18 O -0.353 6.353 19 Si 0.741 3.259 20 H -0.165 1.165 21 H -0.164 1.164 22 H -0.166 1.166 23 C -0.125 4.125 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.201 0.799 46 H 0.153 0.847 47 H 0.239 0.761 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.804 -2.337 0.817 3.063 hybrid contribution -1.104 1.548 -1.810 2.625 sum 0.700 -0.789 -0.993 1.449 Atomic orbital electron populations 1.21546 0.94186 1.01820 1.01894 1.25883 1.00450 1.03018 1.12971 1.21608 1.01310 0.94653 1.02271 1.21545 1.01035 1.00036 0.96816 0.76200 0.62477 0.52513 0.64146 1.27115 1.06939 1.09915 1.18100 1.27108 1.25354 1.05052 1.04509 1.85316 1.79732 1.46625 1.47759 1.21709 0.98904 0.90060 0.87405 1.23404 1.04909 0.96942 0.98507 1.87184 1.71155 1.11437 1.34835 1.21982 1.03821 0.91489 0.99157 1.18355 0.96442 0.99776 0.96967 1.25797 1.02343 1.01400 1.02283 1.84495 1.23036 1.43451 1.14230 1.24924 1.00497 1.05483 1.03138 1.24348 1.06896 0.95125 0.88366 1.86503 1.36093 1.41689 1.71003 0.85921 0.79723 0.78629 0.81639 1.16484 1.16432 1.16602 1.20048 1.01607 0.98759 0.92120 0.92126 0.93226 0.92472 0.91798 0.93011 0.91820 0.92471 0.93230 0.92100 0.91292 0.90271 0.91070 0.91043 0.90267 0.91284 0.91247 0.91181 0.88551 0.88641 0.87632 0.87817 0.79915 0.84686 0.76149 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.03 7.85 71.98 0.56 0.53 16 2 C -0.38 0.25 0.53 -10.79 -0.01 0.24 16 3 C -0.14 0.20 7.85 71.98 0.56 0.76 16 4 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 5 Si 1.32 -2.81 8.45 68.60 0.58 -2.23 16 6 C -0.52 0.66 8.50 113.37 0.96 1.62 16 7 C -0.52 0.74 8.50 113.37 0.96 1.70 16 8 O -0.63 -0.18 8.56 -148.98 -1.28 -1.45 16 9 C 0.10 -0.08 5.13 71.98 0.37 0.29 16 10 C -0.09 0.12 6.31 71.98 0.45 0.57 16 11 S -0.27 -0.25 21.72 -56.49 -1.23 -1.48 16 12 C -0.01 0.03 6.19 71.23 0.44 0.48 16 13 C -0.10 -0.01 5.06 -20.92 -0.11 -0.11 16 14 C -0.18 0.07 10.98 66.72 0.73 0.80 16 15 S 0.08 0.07 20.58 -56.49 -1.16 -1.09 16 16 C -0.22 -0.14 5.72 24.59 0.14 0.00 16 17 C -0.03 0.04 2.96 71.24 0.21 0.25 16 18 O -0.55 -0.17 12.86 -148.98 -1.92 -2.09 16 19 Si 0.92 -0.57 26.25 68.60 1.80 1.23 16 20 H -0.24 -0.06 7.11 99.48 0.71 0.64 16 21 H -0.24 -0.33 7.11 99.48 0.71 0.38 16 22 H -0.24 -0.15 7.11 99.48 0.71 0.55 16 23 C -0.09 -0.08 9.82 21.22 0.21 0.13 16 24 H 0.06 -0.06 7.79 -2.38 -0.02 -0.08 16 25 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 27 H 0.06 -0.18 7.79 -2.38 -0.02 -0.20 16 28 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 30 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 31 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 33 H 0.07 -0.10 7.48 -2.39 -0.02 -0.11 16 34 H 0.08 -0.17 7.79 -2.38 -0.02 -0.18 16 35 H 0.07 -0.05 7.79 -2.38 -0.02 -0.07 16 36 H 0.07 -0.07 7.79 -2.38 -0.02 -0.09 16 37 H 0.08 -0.18 7.79 -2.39 -0.02 -0.19 16 38 H 0.07 -0.11 7.48 -2.38 -0.02 -0.13 16 39 H 0.07 -0.13 7.21 -2.39 -0.02 -0.15 16 40 H 0.07 -0.15 7.21 -2.39 -0.02 -0.17 16 41 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.11 -0.51 8.12 -2.39 -0.02 -0.52 16 44 H 0.10 -0.42 8.13 -2.39 -0.02 -0.44 16 45 H 0.18 -0.72 8.06 -2.91 -0.02 -0.75 16 46 H 0.14 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.39 -2.07 8.70 -74.06 -0.64 -2.71 16 48 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -8.60 410.36 3.89 -4.71 By element: Atomic # 1 Polarization: -6.43 SS G_CDS: 1.02 Total: -5.41 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.07 Total: 7.81 kcal Atomic # 8 Polarization: -0.35 SS G_CDS: -3.19 Total: -3.54 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.38 Total: -1.00 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.39 Total: -2.57 kcal Total: -8.60 3.89 -4.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18313520_18345020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.384 kcal (2) G-P(sol) polarization free energy of solvation -8.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds