Wall clock time and date at job start Tue Mar 9 2021 13:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46878 * 2 1 4 4 C 1.52998 * 109.47273 * 240.00343 * 2 1 3 5 5 Si 1.86296 * 109.47572 * 120.00080 * 2 1 3 6 6 C 1.86310 * 109.46748 * 300.00313 * 5 2 1 7 7 C 1.86290 * 109.47421 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47026 * 59.99729 * 5 2 1 9 9 C 1.42901 * 114.00106 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.47114 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47341 * 65.00335 * 10 9 8 12 12 C 1.35951 * 117.00070 * 175.13995 * 11 10 9 13 13 C 1.38642 * 120.05171 * 95.76113 * 12 11 10 14 14 C 1.50701 * 120.00578 * 359.97438 * 13 12 11 15 15 O 1.42897 * 109.46974 * 195.72853 * 14 13 12 16 16 Si 1.86297 * 109.47107 * 75.72772 * 14 13 12 17 17 H 1.48500 * 109.47182 * 179.97438 * 16 14 13 18 18 H 1.48500 * 109.47136 * 60.00024 * 16 14 13 19 19 H 1.48501 * 109.47047 * 299.99863 * 16 14 13 20 20 C 1.38228 * 119.98823 * 179.72879 * 13 12 11 21 21 C 1.38203 * 120.10479 * 0.24845 * 20 13 12 22 22 C 1.38399 * 120.11811 * 0.02574 * 21 20 13 23 23 Cl 1.73604 * 120.00076 * 179.97438 * 22 21 20 24 24 C 1.38397 * 120.00447 * 359.97438 * 22 21 20 25 25 F 1.35106 * 120.05631 * 180.02562 * 24 22 21 26 26 H 1.08995 * 109.47358 * 299.99426 * 1 2 3 27 27 H 1.08996 * 109.47641 * 60.00128 * 1 2 3 28 28 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47172 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47322 * 300.00129 * 3 2 1 31 31 H 1.09005 * 109.47055 * 59.99796 * 3 2 1 32 32 H 1.08995 * 109.47086 * 299.99582 * 4 2 1 33 33 H 1.09006 * 109.47122 * 59.99751 * 4 2 1 34 34 H 1.09001 * 109.47504 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46833 * 179.97438 * 6 5 2 36 36 H 1.09002 * 109.46985 * 299.99550 * 6 5 2 37 37 H 1.08993 * 109.47009 * 60.00086 * 6 5 2 38 38 H 1.09005 * 109.47142 * 299.99677 * 7 5 2 39 39 H 1.09002 * 109.47531 * 59.99704 * 7 5 2 40 40 H 1.09005 * 109.47608 * 179.97438 * 7 5 2 41 41 H 1.08999 * 109.46828 * 60.00329 * 9 8 5 42 42 H 1.09001 * 109.47064 * 300.00720 * 9 8 5 43 43 H 1.08992 * 109.47348 * 305.00038 * 10 9 8 44 44 H 1.09007 * 109.46734 * 185.00460 * 10 9 8 45 45 H 1.08995 * 109.47094 * 315.72474 * 14 13 12 46 46 H 0.96704 * 114.00287 * 56.68100 * 15 14 13 47 47 H 1.08000 * 119.94361 * 180.27376 * 20 13 12 48 48 H 1.08001 * 119.94494 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1814 2.6519 10 6 1.4639 -4.5994 2.5469 11 8 2.0332 -5.2562 1.4126 12 6 1.7131 -6.5651 1.2323 13 6 0.6755 -6.9153 0.3820 14 6 -0.0989 -5.8448 -0.3428 15 8 -1.3145 -6.3979 -0.8511 16 14 0.9228 -5.1878 -1.7552 17 1 0.1595 -4.1333 -2.4698 18 1 1.2372 -6.2936 -2.6951 19 1 2.1861 -4.6130 -1.2269 20 6 0.3548 -8.2469 0.1953 21 6 1.0636 -9.2303 0.8590 22 6 2.0965 -8.8853 1.7132 23 17 2.9844 -10.1230 2.5459 24 6 2.4216 -7.5536 1.9036 25 9 3.4300 -7.2156 2.7368 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1298 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.8930 -0.5141 3.9323 36 1 1.8933 1.0277 3.0422 37 1 0.4401 -0.0001 3.0422 38 1 4.3777 -1.3911 0.6314 39 1 4.3770 0.1503 1.5216 40 1 4.3775 -1.3909 2.4116 41 1 1.6638 -2.7112 3.5651 42 1 3.1175 -3.2251 2.6758 43 1 0.3809 -4.5517 2.4335 44 1 1.7103 -5.1564 3.4509 45 1 -0.3297 -5.0332 0.3471 46 1 -1.8742 -6.8050 -0.1757 47 1 -0.4507 -8.5191 -0.4706 48 1 0.8112 -10.2699 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_18323484_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:01 Heat of formation + Delta-G solvation = -201.927278 kcal Electronic energy + Delta-G solvation = -30045.780415 eV Core-core repulsion = 25778.567271 eV Total energy + Delta-G solvation = -4267.213145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.01761 -41.36479 -39.21199 -38.05440 -37.75251 -37.05752 -36.85599 -32.41071 -31.68295 -30.21403 -29.38668 -29.11772 -27.88066 -27.40652 -27.05649 -24.36439 -23.46198 -22.92760 -20.45183 -19.58092 -18.82380 -18.50199 -17.92917 -17.61840 -17.31349 -16.65258 -16.36516 -16.16373 -16.07004 -15.95529 -15.78561 -15.19396 -14.88457 -14.80550 -14.58369 -14.52209 -14.17448 -14.03485 -13.92751 -13.62046 -13.51455 -13.43897 -13.38231 -13.26661 -12.96762 -12.95167 -12.87552 -12.61817 -12.42877 -12.12931 -12.07727 -12.01255 -11.91813 -11.75949 -11.67289 -11.60536 -11.38380 -11.23543 -11.06585 -10.41811 -10.09978 -9.88880 -9.64882 -0.39494 -0.26100 0.86407 1.24435 1.37962 1.67119 1.69694 1.74240 1.98150 2.01747 2.08734 2.38119 2.49078 2.81819 3.37140 3.41828 3.69890 3.82846 3.88183 3.96435 4.00428 4.09400 4.09959 4.14862 4.24864 4.34369 4.45157 4.53808 4.54682 4.62167 4.64820 4.66959 4.70619 4.73297 4.79388 4.80818 4.84086 4.98043 5.02441 5.08678 5.09047 5.14709 5.24969 5.30688 5.33461 5.39931 5.46998 5.50281 5.58131 6.20748 6.41324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.136 4.136 4 C -0.137 4.137 5 Si 1.283 2.717 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.087 3.913 10 C 0.059 3.941 11 O -0.308 6.308 12 C 0.076 3.924 13 C -0.102 4.102 14 C -0.083 4.083 15 O -0.537 6.537 16 Si 1.006 2.994 17 H -0.247 1.247 18 H -0.256 1.256 19 H -0.229 1.229 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.068 4.068 23 Cl -0.040 7.040 24 C 0.093 3.907 25 F -0.117 7.117 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.369 0.631 47 H 0.155 0.845 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 0.653 1.668 3.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.417 4.417 3 C -0.193 4.193 4 C -0.194 4.194 5 Si 1.414 2.586 6 C -0.613 4.613 7 C -0.612 4.612 8 O -0.578 6.578 9 C 0.012 3.988 10 C -0.015 4.015 11 O -0.225 6.225 12 C 0.031 3.969 13 C -0.103 4.103 14 C -0.190 4.190 15 O -0.342 6.342 16 Si 0.822 3.178 17 H -0.171 1.171 18 H -0.179 1.179 19 H -0.151 1.151 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.095 4.095 23 Cl -0.011 7.011 24 C 0.072 3.928 25 F -0.095 7.095 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.217 0.783 47 H 0.173 0.827 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.844 1.025 0.311 2.132 hybrid contribution -0.055 -0.204 1.658 1.672 sum -1.899 0.821 1.969 2.856 Atomic orbital electron populations 1.21517 0.93778 1.02018 1.01841 1.25767 1.00702 1.02633 1.12641 1.21553 1.00796 0.94851 1.02145 1.21542 1.00764 1.00234 0.96829 0.76789 0.63236 0.53398 0.65130 1.27033 1.07000 1.09578 1.17644 1.27023 1.24929 1.04673 1.04620 1.85386 1.79125 1.45970 1.47355 1.22076 0.99539 0.89595 0.87620 1.23070 0.98669 0.92085 0.87677 1.86214 1.70687 1.18370 1.47256 1.18187 0.95939 0.84194 0.98577 1.20681 0.95486 0.96505 0.97630 1.25235 0.89975 0.95998 1.07776 1.86747 1.31008 1.78466 1.37996 0.84657 0.78413 0.80045 0.74698 1.17064 1.17942 1.15095 1.20975 1.00608 0.90449 0.99522 1.21082 0.93173 1.01418 0.94324 1.20975 0.98932 0.88338 1.01293 1.98421 1.74259 1.51743 1.76697 1.17778 0.89856 0.91453 0.93741 1.91560 1.56647 1.92804 1.68534 0.92693 0.92718 0.92148 0.92511 0.92464 0.92535 0.92235 0.92661 0.92576 0.91511 0.90642 0.90833 0.90737 0.90764 0.91474 0.90369 0.91248 0.91071 0.91112 0.89201 0.78299 0.82743 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 7.85 37.16 0.29 0.33 16 2 C -0.37 0.15 0.53 -90.62 -0.05 0.10 16 3 C -0.14 0.10 7.85 37.16 0.29 0.40 16 4 C -0.14 -0.05 7.85 37.16 0.29 0.25 16 5 Si 1.28 -1.62 8.45 -169.99 -1.44 -3.06 16 6 C -0.51 0.72 8.50 101.05 0.86 1.57 16 7 C -0.51 0.27 8.50 101.05 0.86 1.12 16 8 O -0.62 0.14 8.52 -40.08 -0.34 -0.20 16 9 C 0.09 -0.13 5.51 37.16 0.20 0.07 16 10 C 0.06 -0.05 6.36 37.16 0.24 0.18 16 11 O -0.31 -0.51 8.44 -24.43 -0.21 -0.72 16 12 C 0.08 0.11 5.37 -39.18 -0.21 -0.10 16 13 C -0.10 -0.01 4.48 -104.48 -0.47 -0.48 16 14 C -0.08 0.01 2.49 36.01 0.09 0.10 16 15 O -0.54 0.47 11.51 -35.23 -0.41 0.06 16 16 Si 1.01 1.69 27.64 -169.99 -4.70 -3.00 16 17 H -0.25 -0.53 7.11 56.52 0.40 -0.12 16 18 H -0.26 -0.66 7.11 56.52 0.40 -0.26 16 19 H -0.23 -0.53 7.11 56.52 0.40 -0.13 16 20 C -0.10 0.12 9.19 -39.60 -0.36 -0.24 16 21 C -0.08 0.07 9.83 -39.54 -0.39 -0.31 16 22 C -0.07 -0.08 6.32 -39.46 -0.25 -0.32 16 23 Cl -0.04 -0.06 28.61 -51.86 -1.48 -1.55 16 24 C 0.09 0.19 7.28 -39.27 -0.29 -0.09 16 25 F -0.12 -0.37 16.68 2.25 0.04 -0.34 16 26 H 0.05 -0.06 7.79 -51.93 -0.40 -0.46 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 0.04 7.96 -51.93 -0.41 -0.37 16 33 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.06 -0.01 7.79 -51.93 -0.40 -0.41 16 35 H 0.07 -0.13 7.48 -51.93 -0.39 -0.51 16 36 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 0.01 7.79 -51.93 -0.40 -0.39 16 39 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 40 H 0.07 -0.06 7.48 -51.93 -0.39 -0.44 16 41 H 0.08 -0.31 7.21 -51.93 -0.37 -0.68 16 42 H 0.07 -0.13 7.22 -51.93 -0.37 -0.50 16 43 H 0.07 -0.15 7.61 -51.93 -0.40 -0.55 16 44 H 0.07 -0.14 8.14 -51.92 -0.42 -0.56 16 45 H 0.09 -0.10 7.19 -51.93 -0.37 -0.47 16 46 H 0.37 -1.66 8.67 45.56 0.39 -1.26 16 47 H 0.16 -0.50 7.07 -52.49 -0.37 -0.87 16 48 H 0.15 -0.44 8.06 -52.49 -0.42 -0.87 16 LS Contribution 407.88 15.07 6.15 6.15 Total: 0.00 -4.56 407.88 -8.52 -13.08 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: -7.24 Total: -13.02 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 1.11 Total: 2.58 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -0.95 Total: -0.85 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: -6.13 Total: -6.06 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.48 Total: -1.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -4.56 -8.52 -13.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18323484_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.844 kcal (2) G-P(sol) polarization free energy of solvation -4.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds