Wall clock time and date at job start Tue Mar 9 2021 13:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46878 * 2 1 4 4 C 1.52998 * 109.47273 * 240.00343 * 2 1 3 5 5 Si 1.86296 * 109.47572 * 120.00080 * 2 1 3 6 6 C 1.86310 * 109.46748 * 300.00313 * 5 2 1 7 7 C 1.86290 * 109.47421 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47026 * 59.99729 * 5 2 1 9 9 C 1.42901 * 114.00106 * 180.02562 * 8 5 2 10 10 C 1.52995 * 109.47114 * 180.02562 * 9 8 5 11 11 O 1.42900 * 109.47341 * 65.00335 * 10 9 8 12 12 C 1.35951 * 117.00070 * 175.13995 * 11 10 9 13 13 C 1.38642 * 120.05171 * 95.76113 * 12 11 10 14 14 C 1.50701 * 120.00578 * 359.97438 * 13 12 11 15 15 O 1.42897 * 109.46974 * 195.72853 * 14 13 12 16 16 Si 1.86297 * 109.47107 * 75.72772 * 14 13 12 17 17 H 1.48500 * 109.47182 * 179.97438 * 16 14 13 18 18 H 1.48500 * 109.47136 * 60.00024 * 16 14 13 19 19 H 1.48501 * 109.47047 * 299.99863 * 16 14 13 20 20 C 1.38228 * 119.98823 * 179.72879 * 13 12 11 21 21 C 1.38203 * 120.10479 * 0.24845 * 20 13 12 22 22 C 1.38399 * 120.11811 * 0.02574 * 21 20 13 23 23 Cl 1.73604 * 120.00076 * 179.97438 * 22 21 20 24 24 C 1.38397 * 120.00447 * 359.97438 * 22 21 20 25 25 F 1.35106 * 120.05631 * 180.02562 * 24 22 21 26 26 H 1.08995 * 109.47358 * 299.99426 * 1 2 3 27 27 H 1.08996 * 109.47641 * 60.00128 * 1 2 3 28 28 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47172 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47322 * 300.00129 * 3 2 1 31 31 H 1.09005 * 109.47055 * 59.99796 * 3 2 1 32 32 H 1.08995 * 109.47086 * 299.99582 * 4 2 1 33 33 H 1.09006 * 109.47122 * 59.99751 * 4 2 1 34 34 H 1.09001 * 109.47504 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46833 * 179.97438 * 6 5 2 36 36 H 1.09002 * 109.46985 * 299.99550 * 6 5 2 37 37 H 1.08993 * 109.47009 * 60.00086 * 6 5 2 38 38 H 1.09005 * 109.47142 * 299.99677 * 7 5 2 39 39 H 1.09002 * 109.47531 * 59.99704 * 7 5 2 40 40 H 1.09005 * 109.47608 * 179.97438 * 7 5 2 41 41 H 1.08999 * 109.46828 * 60.00329 * 9 8 5 42 42 H 1.09001 * 109.47064 * 300.00720 * 9 8 5 43 43 H 1.08992 * 109.47348 * 305.00038 * 10 9 8 44 44 H 1.09007 * 109.46734 * 185.00460 * 10 9 8 45 45 H 1.08995 * 109.47094 * 315.72474 * 14 13 12 46 46 H 0.96704 * 114.00287 * 56.68100 * 15 14 13 47 47 H 1.08000 * 119.94361 * 180.27376 * 20 13 12 48 48 H 1.08001 * 119.94494 * 180.02562 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5300 0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5211 9 6 2.0287 -3.1814 2.6519 10 6 1.4639 -4.5994 2.5469 11 8 2.0332 -5.2562 1.4126 12 6 1.7131 -6.5651 1.2323 13 6 0.6755 -6.9153 0.3820 14 6 -0.0989 -5.8448 -0.3428 15 8 -1.3145 -6.3979 -0.8511 16 14 0.9228 -5.1878 -1.7552 17 1 0.1595 -4.1333 -2.4698 18 1 1.2372 -6.2936 -2.6951 19 1 2.1861 -4.6130 -1.2269 20 6 0.3548 -8.2469 0.1953 21 6 1.0636 -9.2303 0.8590 22 6 2.0965 -8.8853 1.7132 23 17 2.9844 -10.1230 2.5459 24 6 2.4216 -7.5536 1.9036 25 9 3.4300 -7.2156 2.7368 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1298 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.8930 -0.5141 3.9323 36 1 1.8933 1.0277 3.0422 37 1 0.4401 -0.0001 3.0422 38 1 4.3777 -1.3911 0.6314 39 1 4.3770 0.1503 1.5216 40 1 4.3775 -1.3909 2.4116 41 1 1.6638 -2.7112 3.5651 42 1 3.1175 -3.2251 2.6758 43 1 0.3809 -4.5517 2.4335 44 1 1.7103 -5.1564 3.4509 45 1 -0.3297 -5.0332 0.3471 46 1 -1.8742 -6.8050 -0.1757 47 1 -0.4507 -8.5191 -0.4706 48 1 0.8112 -10.2699 0.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18323484_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:01 Heat of formation + Delta-G solvation = -192.316829 kcal Electronic energy + Delta-G solvation = -30045.363675 eV Core-core repulsion = 25778.567271 eV Total energy + Delta-G solvation = -4266.796404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.14128 -41.34664 -39.16464 -38.05474 -37.67600 -37.04457 -36.82144 -32.37304 -31.63516 -30.14179 -29.29928 -29.05804 -27.83167 -27.37537 -27.03595 -24.29713 -23.38527 -22.92225 -20.41828 -19.56835 -18.78491 -18.49959 -17.84737 -17.59755 -17.34844 -16.61720 -16.41782 -16.15231 -16.09634 -15.87532 -15.74526 -15.16922 -14.85191 -14.79871 -14.57911 -14.49250 -14.17575 -14.01604 -13.90035 -13.54115 -13.45275 -13.36791 -13.30037 -13.17512 -12.95619 -12.92029 -12.82501 -12.58868 -12.40200 -12.23514 -12.18894 -12.14789 -11.85002 -11.75168 -11.66584 -11.54390 -11.30928 -11.17547 -11.03947 -10.32367 -10.05094 -9.88525 -9.65850 -0.38754 -0.25236 0.82306 1.17621 1.48401 1.51528 1.59334 1.78420 1.91030 2.06762 2.12929 2.46088 2.51565 2.80387 3.40965 3.48484 3.78452 3.95523 3.98268 4.08114 4.10378 4.13013 4.13413 4.28777 4.38399 4.46585 4.47778 4.59210 4.61517 4.71867 4.74313 4.78145 4.80323 4.81181 4.82132 4.84896 4.88874 5.00256 5.08956 5.09797 5.10777 5.20264 5.33483 5.35833 5.41503 5.43090 5.49964 5.59198 5.65556 6.23923 6.71465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.382 4.382 3 C -0.140 4.140 4 C -0.141 4.141 5 Si 1.310 2.690 6 C -0.512 4.512 7 C -0.521 4.521 8 O -0.633 6.633 9 C 0.077 3.923 10 C 0.051 3.949 11 O -0.327 6.327 12 C 0.071 3.929 13 C -0.107 4.107 14 C -0.066 4.066 15 O -0.544 6.544 16 Si 1.006 2.994 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.245 1.245 20 C -0.086 4.086 21 C -0.077 4.077 22 C -0.075 4.075 23 Cl -0.050 7.050 24 C 0.069 3.931 25 F -0.131 7.131 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.388 0.612 47 H 0.180 0.820 48 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 0.359 2.362 4.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.425 4.425 3 C -0.197 4.197 4 C -0.198 4.198 5 Si 1.440 2.560 6 C -0.614 4.614 7 C -0.622 4.622 8 O -0.593 6.593 9 C 0.002 3.998 10 C -0.022 4.022 11 O -0.244 6.244 12 C 0.026 3.974 13 C -0.108 4.108 14 C -0.175 4.175 15 O -0.352 6.352 16 Si 0.826 3.174 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.169 1.169 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.103 4.103 23 Cl -0.021 7.021 24 C 0.049 3.951 25 F -0.109 7.109 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.239 0.761 47 H 0.197 0.803 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.154 0.735 0.989 3.386 hybrid contribution 0.362 -0.109 1.377 1.428 sum -2.792 0.626 2.366 3.713 Atomic orbital electron populations 1.21549 0.93855 1.01991 1.02034 1.25914 1.00745 1.02981 1.12835 1.21594 1.01104 0.94648 1.02342 1.21586 1.00946 0.99947 0.97351 0.76301 0.62130 0.52958 0.64591 1.27009 1.07147 1.09694 1.17561 1.27165 1.26061 1.04752 1.04221 1.85375 1.79257 1.46477 1.48145 1.22318 0.99733 0.89492 0.88276 1.23285 0.99407 0.92224 0.87284 1.86184 1.71350 1.18564 1.48290 1.18323 0.96179 0.84085 0.98814 1.20771 0.95303 0.97231 0.97484 1.24834 0.90041 0.96350 1.06289 1.86704 1.30786 1.78641 1.39071 0.84602 0.78176 0.79290 0.75319 1.18063 1.19358 1.16866 1.21269 1.00574 0.89647 0.98879 1.21369 0.92172 1.02711 0.93293 1.21152 0.99508 0.87790 1.01842 1.98413 1.74661 1.51961 1.77029 1.18005 0.90329 0.92168 0.94616 1.91514 1.57348 1.92977 1.69087 0.91665 0.93378 0.92283 0.92137 0.93111 0.91521 0.92924 0.93071 0.92393 0.90709 0.90442 0.90609 0.91854 0.90451 0.91166 0.87685 0.91376 0.89816 0.90374 0.88115 0.76095 0.80315 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 7.85 71.98 0.56 0.60 16 2 C -0.38 0.09 0.53 -10.79 -0.01 0.08 16 3 C -0.14 0.17 7.85 71.98 0.56 0.73 16 4 C -0.14 -0.30 7.85 71.98 0.56 0.27 16 5 Si 1.31 -3.22 8.45 68.60 0.58 -2.64 16 6 C -0.51 1.97 8.50 113.37 0.96 2.93 16 7 C -0.52 0.22 8.50 113.37 0.96 1.18 16 8 O -0.63 0.19 8.52 -144.34 -1.23 -1.04 16 9 C 0.08 -0.24 5.51 71.98 0.40 0.15 16 10 C 0.05 -0.10 6.36 71.98 0.46 0.36 16 11 O -0.33 -1.32 8.44 -88.36 -0.75 -2.06 16 12 C 0.07 0.23 5.37 22.53 0.12 0.35 16 13 C -0.11 0.04 4.48 -19.77 -0.09 -0.05 16 14 C -0.07 0.06 2.49 71.24 0.18 0.24 16 15 O -0.54 1.81 11.51 -148.98 -1.71 0.10 16 16 Si 1.01 4.41 27.64 68.60 1.90 6.31 16 17 H -0.26 -1.45 7.11 99.48 0.71 -0.74 16 18 H -0.27 -1.71 7.11 99.48 0.71 -1.00 16 19 H -0.25 -1.69 7.11 99.48 0.71 -0.98 16 20 C -0.09 0.35 9.19 22.26 0.20 0.55 16 21 C -0.08 0.23 9.83 22.30 0.22 0.45 16 22 C -0.08 -0.17 6.32 22.35 0.14 -0.03 16 23 Cl -0.05 -0.17 28.61 -2.72 -0.08 -0.25 16 24 C 0.07 0.34 7.28 22.47 0.16 0.50 16 25 F -0.13 -1.02 16.68 44.97 0.75 -0.27 16 26 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 27 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 29 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 30 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.07 -0.22 7.79 -2.38 -0.02 -0.24 16 32 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 33 H 0.05 0.12 8.14 -2.38 -0.02 0.11 16 34 H 0.06 0.07 7.79 -2.39 -0.02 0.06 16 35 H 0.07 -0.39 7.48 -2.38 -0.02 -0.41 16 36 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 37 H 0.07 -0.30 7.79 -2.39 -0.02 -0.31 16 38 H 0.06 0.11 7.79 -2.38 -0.02 0.09 16 39 H 0.08 -0.10 7.79 -2.39 -0.02 -0.12 16 40 H 0.07 -0.09 7.48 -2.38 -0.02 -0.10 16 41 H 0.11 -0.94 7.21 -2.39 -0.02 -0.96 16 42 H 0.07 -0.22 7.22 -2.39 -0.02 -0.24 16 43 H 0.08 -0.40 7.61 -2.39 -0.02 -0.42 16 44 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 45 H 0.10 -0.30 7.19 -2.39 -0.02 -0.32 16 46 H 0.39 -4.40 8.67 -74.05 -0.64 -5.04 16 47 H 0.18 -1.63 7.07 -2.91 -0.02 -1.65 16 48 H 0.17 -1.35 8.06 -2.91 -0.02 -1.38 16 Total: 0.00 -11.95 407.88 5.93 -6.02 By element: Atomic # 1 Polarization: -15.55 SS G_CDS: 1.06 Total: -14.49 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.41 Total: 8.33 kcal Atomic # 8 Polarization: 0.69 SS G_CDS: -3.69 Total: -3.00 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.75 Total: -0.27 kcal Atomic # 14 Polarization: 1.19 SS G_CDS: 2.48 Total: 3.66 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -11.95 5.93 -6.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18323484_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.294 kcal (2) G-P(sol) polarization free energy of solvation -11.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds