Wall clock time and date at job start Tue Mar 9 2021 13:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47129 * 2 1 4 4 C 1.53002 * 109.47052 * 239.99979 * 2 1 3 5 5 Si 1.86304 * 109.47402 * 120.00091 * 2 1 3 6 6 C 1.86299 * 109.46836 * 299.99957 * 5 2 1 7 7 C 1.86296 * 109.47246 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.46875 * 59.99546 * 5 2 1 9 9 C 1.42904 * 113.99876 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.46968 * 180.02562 * 9 8 5 11 11 O 1.42896 * 109.47097 * 65.00421 * 10 9 8 12 12 C 1.42904 * 114.00181 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47210 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46704 * 65.00027 * 13 12 11 15 15 C 1.35957 * 116.99579 * 175.09487 * 14 13 12 16 16 C 1.38643 * 120.05451 * 95.75439 * 15 14 13 17 17 C 1.50706 * 120.00358 * 359.97438 * 16 15 14 18 18 O 1.42900 * 109.47272 * 195.72270 * 17 16 15 19 19 Si 1.86298 * 109.47070 * 75.72468 * 17 16 15 20 20 H 1.48495 * 109.47205 * 179.97438 * 19 17 16 21 21 H 1.48505 * 109.47178 * 60.00076 * 19 17 16 22 22 H 1.48507 * 109.47253 * 300.00449 * 19 17 16 23 23 C 1.38224 * 119.99443 * 179.72466 * 16 15 14 24 24 C 1.38208 * 120.10189 * 0.25929 * 23 16 15 25 25 C 1.38399 * 120.11487 * 0.02562 * 24 23 16 26 26 Cl 1.73598 * 119.99732 * 180.02562 * 25 24 23 27 27 C 1.38403 * 120.00834 * 359.97438 * 25 24 23 28 28 F 1.35099 * 120.05480 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.46825 * 299.99900 * 1 2 3 30 30 H 1.08996 * 109.47203 * 59.99768 * 1 2 3 31 31 H 1.09002 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47007 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47054 * 300.00040 * 3 2 1 34 34 H 1.08991 * 109.46840 * 60.00114 * 3 2 1 35 35 H 1.09003 * 109.47038 * 300.00423 * 4 2 1 36 36 H 1.09004 * 109.47141 * 59.99954 * 4 2 1 37 37 H 1.08994 * 109.47149 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.47052 * 179.97438 * 6 5 2 39 39 H 1.08999 * 109.47442 * 299.99733 * 6 5 2 40 40 H 1.09004 * 109.47558 * 60.00019 * 6 5 2 41 41 H 1.09003 * 109.46949 * 299.99989 * 7 5 2 42 42 H 1.08998 * 109.46980 * 59.99682 * 7 5 2 43 43 H 1.08996 * 109.47047 * 180.02562 * 7 5 2 44 44 H 1.08999 * 109.46342 * 60.00356 * 9 8 5 45 45 H 1.08992 * 109.47009 * 300.00557 * 9 8 5 46 46 H 1.09002 * 109.47038 * 305.00112 * 10 9 8 47 47 H 1.09004 * 109.46848 * 185.00381 * 10 9 8 48 48 H 1.08995 * 109.46986 * 59.99874 * 12 11 10 49 49 H 1.08994 * 109.46953 * 299.99804 * 12 11 10 50 50 H 1.08998 * 109.47075 * 305.00212 * 13 12 11 51 51 H 1.08996 * 109.46950 * 184.99847 * 13 12 11 52 52 H 1.09002 * 109.47026 * 315.72708 * 17 16 15 53 53 H 0.96708 * 113.99720 * 56.61157 * 18 17 16 54 54 H 1.08002 * 119.94651 * 180.27191 * 23 16 15 55 55 H 1.08000 * 119.94254 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5301 0.0000 3.0422 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4159 1.5211 9 6 2.0295 -3.1817 2.6514 10 6 1.4645 -4.5997 2.5465 11 8 2.0329 -5.2561 1.4116 12 6 1.5696 -6.5946 1.2218 13 6 2.2401 -7.1959 -0.0151 14 8 3.6459 -7.3112 0.2139 15 6 4.3802 -7.9247 -0.7520 16 6 5.0286 -7.1689 -1.7165 17 6 4.9195 -5.6660 -1.6954 18 8 5.3440 -5.1397 -2.9543 19 14 6.0013 -4.9838 -0.3407 20 1 5.8943 -3.5028 -0.3202 21 1 7.4123 -5.3742 -0.5901 22 1 5.5603 -5.5307 0.9677 23 6 5.7795 -7.7937 -2.6945 24 6 5.8808 -9.1719 -2.7160 25 6 5.2305 -9.9309 -1.7588 26 17 5.3604 -11.6618 -1.7882 27 6 4.4774 -9.3102 -0.7774 28 9 3.8426 -10.0503 0.1578 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2495 38 1 1.8931 -0.5141 3.9322 39 1 1.8934 1.0277 3.0423 40 1 0.4400 0.0000 3.0423 41 1 4.3770 -1.3930 0.6307 42 1 4.3777 0.1486 1.5204 43 1 4.3774 -1.3931 2.4104 44 1 1.6654 -2.7118 3.5650 45 1 3.1183 -3.2255 2.6743 46 1 0.3814 -4.5519 2.4339 47 1 1.7116 -5.1570 3.4501 48 1 0.4887 -6.5886 1.0820 49 1 1.8193 -7.1931 2.0979 50 1 2.0638 -6.5490 -0.8745 51 1 1.8217 -8.1830 -0.2114 52 1 3.8839 -5.3794 -1.5123 53 1 4.8577 -5.4926 -3.7122 54 1 6.2879 -7.2039 -3.4429 55 1 6.4685 -9.6573 -3.4810 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_18323484_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:49:58 Heat of formation + Delta-G solvation = -237.360470 kcal Electronic energy + Delta-G solvation = -36324.730457 eV Core-core repulsion = 31426.223384 eV Total energy + Delta-G solvation = -4898.507073 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 408.154 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.16806 -41.38381 -39.47306 -38.70514 -38.05029 -37.40694 -37.08102 -36.80282 -32.60139 -31.97881 -30.82534 -29.61703 -29.15668 -29.05009 -27.81925 -27.36242 -27.06483 -24.32870 -23.44544 -23.42139 -22.94804 -20.39363 -19.61448 -18.81912 -18.53419 -18.01155 -17.82381 -17.66525 -17.34255 -16.67958 -16.47932 -16.28197 -16.16726 -16.04241 -15.85358 -15.81977 -15.20676 -15.07717 -14.82845 -14.70773 -14.64124 -14.25989 -14.17057 -14.01156 -13.95093 -13.56553 -13.42556 -13.38703 -13.35067 -13.18144 -13.01667 -12.93149 -12.90715 -12.69343 -12.52942 -12.43238 -12.36621 -12.24820 -12.18568 -12.11064 -11.77548 -11.75774 -11.65982 -11.48444 -11.23937 -11.21021 -11.06901 -10.55941 -10.29579 -10.03273 -9.91358 -9.68527 -0.41325 -0.27899 0.80435 1.14165 1.46693 1.54092 1.55273 1.80813 1.87389 2.03156 2.13405 2.46249 2.49833 2.68630 2.77526 3.38157 3.45778 3.76180 3.91614 3.94839 4.04700 4.08017 4.14449 4.15109 4.15978 4.24138 4.30278 4.37049 4.45551 4.49039 4.51502 4.57922 4.58966 4.62971 4.71913 4.73830 4.74990 4.79164 4.79992 4.84293 4.84572 4.86023 4.86729 5.02512 5.06712 5.11531 5.12095 5.22459 5.33064 5.35946 5.43422 5.45588 5.54062 5.59753 5.64712 6.15278 6.29403 6.68304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.380 4.380 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.306 2.694 6 C -0.513 4.513 7 C -0.524 4.524 8 O -0.631 6.631 9 C 0.073 3.927 10 C 0.054 3.946 11 O -0.395 6.395 12 C 0.061 3.939 13 C 0.059 3.941 14 O -0.328 6.328 15 C 0.070 3.930 16 C -0.107 4.107 17 C -0.066 4.066 18 O -0.543 6.543 19 Si 1.007 2.993 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.249 1.249 23 C -0.085 4.085 24 C -0.076 4.076 25 C -0.075 4.075 26 Cl -0.048 7.048 27 C 0.071 3.929 28 F -0.131 7.131 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.095 0.905 53 H 0.388 0.612 54 H 0.180 0.820 55 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 1.452 -0.985 2.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.436 2.564 6 C -0.615 4.615 7 C -0.625 4.625 8 O -0.591 6.591 9 C -0.002 4.002 10 C -0.023 4.023 11 O -0.315 6.315 12 C -0.015 4.015 13 C -0.015 4.015 14 O -0.246 6.246 15 C 0.024 3.976 16 C -0.108 4.108 17 C -0.175 4.175 18 O -0.350 6.350 19 Si 0.827 3.173 20 H -0.179 1.179 21 H -0.189 1.189 22 H -0.173 1.173 23 C -0.103 4.103 24 C -0.094 4.094 25 C -0.103 4.103 26 Cl -0.019 7.019 27 C 0.050 3.950 28 F -0.109 7.109 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.099 0.901 52 H 0.113 0.887 53 H 0.239 0.761 54 H 0.198 0.802 55 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.191 1.894 -0.029 2.237 hybrid contribution -0.867 -0.858 -0.301 1.256 sum -2.057 1.036 -0.329 2.327 Atomic orbital electron populations 1.21520 0.93966 1.01790 1.01894 1.25860 1.00585 1.02900 1.12917 1.21601 1.01129 0.94726 1.02314 1.21524 1.00740 1.00086 0.96947 0.76376 0.62062 0.53226 0.64717 1.27030 1.07019 1.09736 1.17732 1.27203 1.26261 1.04840 1.04181 1.85383 1.79133 1.46315 1.48270 1.22319 0.99288 0.90778 0.87826 1.22822 0.98531 0.91979 0.88922 1.87957 1.68540 1.26416 1.48543 1.22623 0.98359 0.83497 0.97035 1.23102 0.78099 1.01035 0.99237 1.86180 1.20501 1.77036 1.40834 1.18316 0.98799 0.87740 0.92696 1.20767 0.98428 0.97423 0.94173 1.24828 1.07323 0.90384 0.94994 1.86701 1.64383 1.68910 1.15049 0.84574 0.77090 0.79765 0.75848 1.17928 1.18930 1.17283 1.21275 0.96991 0.93614 0.98450 1.21383 0.97363 0.93481 0.97158 1.21150 1.03361 0.86673 0.99076 1.98413 1.96973 1.08396 1.98127 1.17980 0.98387 0.88771 0.89815 1.91512 1.79888 1.76437 1.63067 0.91995 0.93264 0.92504 0.92126 0.92986 0.91679 0.92506 0.93118 0.92631 0.90852 0.90394 0.90788 0.91905 0.90272 0.91248 0.88837 0.92029 0.91369 0.90540 0.88944 0.92023 0.90498 0.90131 0.88707 0.76117 0.80228 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.05 7.85 71.98 0.56 0.51 16 2 C -0.38 -0.11 0.53 -10.79 -0.01 -0.11 16 3 C -0.14 0.09 7.85 71.98 0.56 0.66 16 4 C -0.14 -0.24 7.85 71.98 0.56 0.33 16 5 Si 1.31 -1.42 8.45 68.60 0.58 -0.84 16 6 C -0.51 1.15 8.50 113.37 0.96 2.11 16 7 C -0.52 -0.56 8.50 113.37 0.96 0.40 16 8 O -0.63 -0.97 8.52 -144.34 -1.23 -2.20 16 9 C 0.07 -0.09 5.51 71.98 0.40 0.31 16 10 C 0.05 -0.07 6.32 71.98 0.45 0.39 16 11 O -0.39 -1.29 10.27 -135.05 -1.39 -2.67 16 12 C 0.06 -0.06 6.32 71.98 0.45 0.40 16 13 C 0.06 0.01 6.36 71.98 0.46 0.47 16 14 O -0.33 -1.79 8.44 -88.43 -0.75 -2.54 16 15 C 0.07 0.30 5.37 22.53 0.12 0.42 16 16 C -0.11 -0.07 4.48 -19.77 -0.09 -0.16 16 17 C -0.07 -0.03 2.49 71.24 0.18 0.14 16 18 O -0.54 1.21 11.51 -148.98 -1.71 -0.51 16 19 Si 1.01 5.45 27.64 68.60 1.90 7.34 16 20 H -0.26 -1.69 7.11 99.48 0.71 -0.99 16 21 H -0.27 -1.78 7.11 99.48 0.71 -1.08 16 22 H -0.25 -2.04 7.11 99.48 0.71 -1.33 16 23 C -0.09 0.29 9.19 22.26 0.20 0.50 16 24 C -0.08 0.19 9.83 22.30 0.22 0.41 16 25 C -0.07 -0.20 6.32 22.35 0.14 -0.06 16 26 Cl -0.05 -0.18 28.61 -2.72 -0.08 -0.26 16 27 C 0.07 0.39 7.28 22.47 0.16 0.56 16 28 F -0.13 -1.10 16.68 44.97 0.75 -0.35 16 29 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 30 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 32 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 33 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 34 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 35 H 0.06 0.14 7.97 -2.39 -0.02 0.12 16 36 H 0.05 0.10 8.14 -2.38 -0.02 0.08 16 37 H 0.05 0.08 7.79 -2.39 -0.02 0.06 16 38 H 0.07 -0.25 7.48 -2.38 -0.02 -0.27 16 39 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 40 H 0.07 -0.16 7.79 -2.38 -0.02 -0.18 16 41 H 0.06 0.21 7.79 -2.39 -0.02 0.20 16 42 H 0.08 -0.02 7.79 -2.39 -0.02 -0.04 16 43 H 0.07 0.02 7.48 -2.39 -0.02 0.00 16 44 H 0.09 -0.60 7.21 -2.39 -0.02 -0.62 16 45 H 0.06 -0.07 7.21 -2.39 -0.02 -0.09 16 46 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 50 H 0.08 -0.13 7.61 -2.39 -0.02 -0.15 16 51 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 52 H 0.10 -0.04 7.19 -2.39 -0.02 -0.06 16 53 H 0.39 -3.94 8.67 -74.05 -0.64 -4.58 16 54 H 0.18 -1.54 7.07 -2.91 -0.02 -1.56 16 55 H 0.17 -1.33 8.06 -2.91 -0.02 -1.35 16 Total: 0.00 -13.90 463.34 5.37 -8.53 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: 0.99 Total: -13.77 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.32 Total: 7.27 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -5.08 Total: -7.92 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.75 Total: -0.35 kcal Atomic # 14 Polarization: 4.03 SS G_CDS: 2.48 Total: 6.51 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -13.90 5.37 -8.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_18323484_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.834 kcal (2) G-P(sol) polarization free energy of solvation -13.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds