Wall clock time and date at job start Tue Mar 9 2021 13:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47053 * 239.99911 * 2 1 3 5 5 Si 1.86300 * 109.46954 * 120.00255 * 2 1 3 6 6 C 1.86305 * 109.47131 * 299.99567 * 5 2 1 7 7 C 1.86303 * 109.47051 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47521 * 59.99575 * 5 2 1 9 9 C 1.42900 * 114.00458 * 179.97438 * 8 5 2 10 10 C 1.52995 * 109.47211 * 179.97438 * 9 8 5 11 11 O 1.42905 * 109.46827 * 65.01121 * 10 9 8 12 12 C 1.35975 * 116.99959 * 179.97438 * 11 10 9 13 13 C 1.38655 * 119.98638 * 359.96207 * 12 11 10 14 14 C 1.38536 * 119.98858 * 179.97438 * 13 12 11 15 15 C 1.39258 * 119.87757 * 0.06070 * 14 13 12 16 16 C 1.38525 * 119.92298 * 359.97435 * 15 14 13 17 17 C 1.38218 * 120.09921 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.95787 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47120 * 255.00215 * 18 17 16 20 20 Si 1.86300 * 109.47062 * 15.00141 * 18 17 16 21 21 H 1.48503 * 109.46984 * 60.00093 * 20 18 17 22 22 H 1.48502 * 109.46941 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47122 * 299.99723 * 20 18 17 24 24 O 1.36606 * 108.61776 * 179.97438 * 15 14 13 25 25 C 1.43984 * 105.46886 * 17.29183 * 24 15 14 26 26 O 1.36500 * 131.47166 * 180.02562 * 14 13 12 27 27 H 1.09003 * 109.46800 * 299.99987 * 1 2 3 28 28 H 1.09003 * 109.46925 * 59.99783 * 1 2 3 29 29 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47202 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47260 * 300.00011 * 3 2 1 32 32 H 1.09003 * 109.47135 * 60.00218 * 3 2 1 33 33 H 1.09001 * 109.47335 * 299.99910 * 4 2 1 34 34 H 1.08994 * 109.47154 * 60.00330 * 4 2 1 35 35 H 1.09004 * 109.47352 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46871 * 180.02562 * 6 5 2 37 37 H 1.09005 * 109.46959 * 300.00306 * 6 5 2 38 38 H 1.08997 * 109.46494 * 59.99823 * 6 5 2 39 39 H 1.08995 * 109.47237 * 300.00095 * 7 5 2 40 40 H 1.09000 * 109.47446 * 59.99988 * 7 5 2 41 41 H 1.09003 * 109.47021 * 179.97438 * 7 5 2 42 42 H 1.09008 * 109.46367 * 60.00354 * 9 8 5 43 43 H 1.08999 * 109.47539 * 300.01007 * 9 8 5 44 44 H 1.08990 * 109.47757 * 305.00726 * 10 9 8 45 45 H 1.08998 * 109.47263 * 185.00227 * 10 9 8 46 46 H 1.07991 * 120.00406 * 0.02562 * 13 12 11 47 47 H 1.07997 * 119.95067 * 179.97438 * 16 15 14 48 48 H 1.09001 * 109.46781 * 135.00148 * 18 17 16 49 49 H 0.96699 * 113.99873 * 180.02562 * 19 18 17 50 50 H 1.09002 * 110.57822 * 214.30037 * 25 24 15 51 51 H 1.09003 * 110.56828 * 91.42630 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8790 1.5207 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1818 2.6514 10 6 1.4633 -4.5993 2.5471 11 8 2.0309 -5.2565 1.4122 12 6 1.6309 -6.5342 1.1748 13 6 0.7124 -7.1409 2.0179 14 6 0.3045 -8.4425 1.7757 15 6 0.8196 -9.1395 0.6857 16 6 1.7376 -8.5294 -0.1534 17 6 2.1431 -7.2307 0.0902 18 6 3.1424 -6.5703 -0.8244 19 8 4.4156 -6.5144 -0.1779 20 14 3.2884 -7.5549 -2.3992 21 1 1.9653 -7.6130 -3.0711 22 1 4.2726 -6.9038 -3.3006 23 1 3.7431 -8.9324 -2.0814 24 8 0.2667 -10.3885 0.6659 25 6 -0.8949 -10.3077 1.5128 26 8 -0.5705 -9.2538 2.4387 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.8937 -0.5137 3.9323 37 1 1.8934 1.0277 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3769 -1.3930 0.6308 40 1 4.3777 0.1485 1.5206 41 1 4.3772 -1.3925 2.4110 42 1 1.6651 -2.7118 3.5651 43 1 3.1181 -3.2256 2.6746 44 1 0.3802 -4.5509 2.4349 45 1 1.7103 -5.1566 3.4507 46 1 0.3144 -6.5985 2.8626 47 1 2.1377 -9.0697 -0.9986 48 1 2.8086 -5.5592 -1.0576 49 1 5.1089 -6.1003 -0.7097 50 1 -1.0494 -11.2481 2.0419 51 1 -1.7773 -10.0463 0.9287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_1880786_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:26 Heat of formation + Delta-G solvation = -197.661843 kcal Electronic energy + Delta-G solvation = -30976.976911 eV Core-core repulsion = 26773.611973 eV Total energy + Delta-G solvation = -4203.364938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.13884 -40.89728 -38.66114 -37.62475 -37.19243 -36.87049 -36.82888 -32.36191 -31.38888 -29.97506 -29.37274 -29.10985 -27.87618 -27.39855 -27.34801 -25.85781 -24.85961 -23.15225 -22.58945 -20.43927 -19.84296 -18.70494 -18.55052 -18.42224 -18.11186 -17.81717 -16.82245 -16.40530 -16.21178 -16.20167 -15.79232 -15.75127 -15.29729 -15.19769 -15.08046 -14.87889 -14.73004 -14.63320 -14.10794 -14.04150 -13.90686 -13.78538 -13.59330 -13.52915 -13.44464 -13.26531 -13.06550 -12.96334 -12.94051 -12.82330 -12.50184 -12.40159 -12.12100 -11.93930 -11.86413 -11.73610 -11.70712 -11.57861 -11.33725 -11.10149 -10.39735 -10.20065 -10.09032 -9.84087 -8.69228 0.02468 0.23505 1.19343 1.40465 1.47620 1.54046 1.71143 1.73637 1.94675 2.02770 2.14735 2.40520 2.43234 2.47836 3.43317 3.53630 3.67613 3.79643 3.88147 3.94443 3.97831 4.05675 4.10266 4.10679 4.15080 4.16376 4.24636 4.34346 4.40642 4.46054 4.56543 4.63549 4.67851 4.71164 4.73087 4.74610 4.79501 4.84542 4.96969 4.98633 5.02094 5.09055 5.09598 5.14449 5.16337 5.29748 5.31827 5.34570 5.40457 5.48053 5.51151 5.58550 6.01653 6.36994 6.71115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.513 4.513 7 C -0.510 4.510 8 O -0.619 6.619 9 C 0.088 3.912 10 C 0.051 3.949 11 O -0.282 6.282 12 C 0.175 3.825 13 C -0.195 4.195 14 C 0.083 3.917 15 C -0.004 4.004 16 C -0.064 4.064 17 C -0.103 4.103 18 C -0.063 4.063 19 O -0.540 6.540 20 Si 0.936 3.064 21 H -0.246 1.246 22 H -0.253 1.253 23 H -0.247 1.247 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.306 6.306 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.145 0.855 47 H 0.142 0.858 48 H 0.083 0.917 49 H 0.378 0.622 50 H 0.134 0.866 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 2.208 0.503 2.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.578 6.578 9 C 0.012 3.988 10 C -0.024 4.024 11 O -0.195 6.195 12 C 0.129 3.871 13 C -0.215 4.215 14 C 0.038 3.962 15 C -0.048 4.048 16 C -0.082 4.082 17 C -0.104 4.104 18 C -0.174 4.174 19 O -0.346 6.346 20 Si 0.759 3.241 21 H -0.170 1.170 22 H -0.176 1.176 23 H -0.170 1.170 24 O -0.223 6.223 25 C 0.102 3.898 26 O -0.222 6.222 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.162 0.838 47 H 0.159 0.841 48 H 0.101 0.899 49 H 0.225 0.775 50 H 0.151 0.849 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.998 1.174 0.079 1.543 hybrid contribution 0.067 0.742 0.421 0.856 sum -0.932 1.916 0.500 2.189 Atomic orbital electron populations 1.21510 0.93864 1.01989 1.01744 1.25772 1.00628 1.02582 1.12780 1.21557 1.00786 0.94940 1.02108 1.21508 1.00621 1.00310 0.96666 0.76717 0.63123 0.53340 0.64960 1.27058 1.07002 1.09601 1.17782 1.27023 1.24957 1.04626 1.04607 1.85398 1.79085 1.45955 1.47345 1.22072 0.99492 0.89562 0.87667 1.23098 0.99217 0.92099 0.87963 1.86256 1.64005 1.22387 1.46818 1.18159 0.91829 0.84503 0.92651 1.20023 1.04314 0.92638 1.04483 1.19439 0.93589 0.92100 0.91067 1.19409 1.02153 0.84970 0.98252 1.19713 0.96924 0.92714 0.98847 1.18165 1.01391 0.93056 0.97786 1.24426 0.84927 1.05010 1.02988 1.86523 1.18169 1.84042 1.45841 0.85941 0.82049 0.80405 0.75745 1.16971 1.17644 1.17047 1.87405 1.40971 1.26525 1.67369 1.25690 0.88551 0.91975 0.83615 1.87382 1.60353 1.36514 1.37952 0.92764 0.92824 0.92157 0.92507 0.92523 0.92571 0.92039 0.92869 0.92684 0.91501 0.90672 0.90872 0.90727 0.90831 0.91472 0.90423 0.91199 0.90540 0.90414 0.83762 0.84060 0.89930 0.77461 0.84852 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 7.85 37.16 0.29 0.33 16 2 C -0.37 0.24 0.53 -90.63 -0.05 0.19 16 3 C -0.14 0.12 7.85 37.15 0.29 0.42 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.29 -2.00 8.45 -169.99 -1.44 -3.43 16 6 C -0.51 0.72 8.50 101.05 0.86 1.58 16 7 C -0.51 0.52 8.50 101.05 0.86 1.38 16 8 O -0.62 0.14 8.52 -40.08 -0.34 -0.20 16 9 C 0.09 -0.14 5.50 37.15 0.20 0.06 16 10 C 0.05 -0.05 5.12 37.15 0.19 0.14 16 11 O -0.28 -0.55 9.42 -24.51 -0.23 -0.78 16 12 C 0.18 0.46 6.66 -39.26 -0.26 0.20 16 13 C -0.20 -0.41 9.05 -39.32 -0.36 -0.77 16 14 C 0.08 0.28 7.15 -39.09 -0.28 0.00 16 15 C 0.00 -0.01 7.15 -39.10 -0.28 -0.29 16 16 C -0.06 -0.19 8.67 -39.48 -0.34 -0.53 16 17 C -0.10 -0.28 5.31 -104.46 -0.55 -0.84 16 18 C -0.06 -0.06 2.36 36.01 0.09 0.03 16 19 O -0.54 -0.61 12.86 -35.23 -0.45 -1.07 16 20 Si 0.94 0.15 25.49 -169.99 -4.33 -4.18 16 21 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 22 H -0.25 0.01 7.11 56.52 0.40 0.41 16 23 H -0.25 -0.30 6.73 56.52 0.38 0.08 16 24 O -0.31 -1.01 11.41 -46.04 -0.53 -1.54 16 25 C 0.21 0.05 8.89 101.05 0.90 0.95 16 26 O -0.31 -0.87 11.40 -45.69 -0.52 -1.40 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 33 H 0.06 0.01 7.97 -51.93 -0.41 -0.41 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 36 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 37 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 41 H 0.07 -0.09 7.48 -51.93 -0.39 -0.47 16 42 H 0.08 -0.31 7.21 -51.92 -0.37 -0.68 16 43 H 0.07 -0.15 7.21 -51.93 -0.37 -0.53 16 44 H 0.08 -0.12 7.66 -51.93 -0.40 -0.52 16 45 H 0.08 -0.20 7.66 -51.93 -0.40 -0.60 16 46 H 0.14 -0.02 6.29 -52.49 -0.33 -0.35 16 47 H 0.14 0.24 4.88 -52.49 -0.26 -0.02 16 48 H 0.08 -0.01 7.82 -51.93 -0.41 -0.42 16 49 H 0.38 -1.24 8.74 45.56 0.40 -0.84 16 50 H 0.13 -0.35 8.14 -51.93 -0.42 -0.77 16 51 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 LS Contribution 406.81 15.07 6.13 6.13 Total: 0.00 -7.05 406.81 -7.77 -14.82 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: -7.91 Total: -11.53 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 1.85 Total: 3.17 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: -2.07 Total: -4.98 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -5.77 Total: -7.62 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -7.05 -7.77 -14.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.840 kcal (2) G-P(sol) polarization free energy of solvation -7.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds