Wall clock time and date at job start Tue Mar 9 2021 13:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47053 * 239.99911 * 2 1 3 5 5 Si 1.86300 * 109.46954 * 120.00255 * 2 1 3 6 6 C 1.86305 * 109.47131 * 299.99567 * 5 2 1 7 7 C 1.86303 * 109.47051 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47521 * 59.99575 * 5 2 1 9 9 C 1.42900 * 114.00458 * 179.97438 * 8 5 2 10 10 C 1.52995 * 109.47211 * 179.97438 * 9 8 5 11 11 O 1.42905 * 109.46827 * 65.01121 * 10 9 8 12 12 C 1.35975 * 116.99959 * 179.97438 * 11 10 9 13 13 C 1.38655 * 119.98638 * 359.96207 * 12 11 10 14 14 C 1.38536 * 119.98858 * 179.97438 * 13 12 11 15 15 C 1.39258 * 119.87757 * 0.06070 * 14 13 12 16 16 C 1.38525 * 119.92298 * 359.97435 * 15 14 13 17 17 C 1.38218 * 120.09921 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.95787 * 179.97438 * 17 16 15 19 19 O 1.42900 * 109.47120 * 255.00215 * 18 17 16 20 20 Si 1.86300 * 109.47062 * 15.00141 * 18 17 16 21 21 H 1.48503 * 109.46984 * 60.00093 * 20 18 17 22 22 H 1.48502 * 109.46941 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47122 * 299.99723 * 20 18 17 24 24 O 1.36606 * 108.61776 * 179.97438 * 15 14 13 25 25 C 1.43984 * 105.46886 * 17.29183 * 24 15 14 26 26 O 1.36500 * 131.47166 * 180.02562 * 14 13 12 27 27 H 1.09003 * 109.46800 * 299.99987 * 1 2 3 28 28 H 1.09003 * 109.46925 * 59.99783 * 1 2 3 29 29 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47202 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47260 * 300.00011 * 3 2 1 32 32 H 1.09003 * 109.47135 * 60.00218 * 3 2 1 33 33 H 1.09001 * 109.47335 * 299.99910 * 4 2 1 34 34 H 1.08994 * 109.47154 * 60.00330 * 4 2 1 35 35 H 1.09004 * 109.47352 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46871 * 180.02562 * 6 5 2 37 37 H 1.09005 * 109.46959 * 300.00306 * 6 5 2 38 38 H 1.08997 * 109.46494 * 59.99823 * 6 5 2 39 39 H 1.08995 * 109.47237 * 300.00095 * 7 5 2 40 40 H 1.09000 * 109.47446 * 59.99988 * 7 5 2 41 41 H 1.09003 * 109.47021 * 179.97438 * 7 5 2 42 42 H 1.09008 * 109.46367 * 60.00354 * 9 8 5 43 43 H 1.08999 * 109.47539 * 300.01007 * 9 8 5 44 44 H 1.08990 * 109.47757 * 305.00726 * 10 9 8 45 45 H 1.08998 * 109.47263 * 185.00227 * 10 9 8 46 46 H 1.07991 * 120.00406 * 0.02562 * 13 12 11 47 47 H 1.07997 * 119.95067 * 179.97438 * 16 15 14 48 48 H 1.09001 * 109.46781 * 135.00148 * 18 17 16 49 49 H 0.96699 * 113.99873 * 180.02562 * 19 18 17 50 50 H 1.09002 * 110.57822 * 214.30037 * 25 24 15 51 51 H 1.09003 * 110.56828 * 91.42630 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1509 -0.8783 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8790 1.5207 8 8 1.6072 -2.4160 1.5212 9 6 2.0293 -3.1818 2.6514 10 6 1.4633 -4.5993 2.5471 11 8 2.0309 -5.2565 1.4122 12 6 1.6309 -6.5342 1.1748 13 6 0.7124 -7.1409 2.0179 14 6 0.3045 -8.4425 1.7757 15 6 0.8196 -9.1395 0.6857 16 6 1.7376 -8.5294 -0.1534 17 6 2.1431 -7.2307 0.0902 18 6 3.1424 -6.5703 -0.8244 19 8 4.4156 -6.5144 -0.1779 20 14 3.2884 -7.5549 -2.3992 21 1 1.9653 -7.6130 -3.0711 22 1 4.2726 -6.9038 -3.3006 23 1 3.7431 -8.9324 -2.0814 24 8 0.2667 -10.3885 0.6659 25 6 -0.8949 -10.3077 1.5128 26 8 -0.5705 -9.2538 2.4387 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.8937 -0.5137 3.9323 37 1 1.8934 1.0277 3.0423 38 1 0.4400 0.0000 3.0422 39 1 4.3769 -1.3930 0.6308 40 1 4.3777 0.1485 1.5206 41 1 4.3772 -1.3925 2.4110 42 1 1.6651 -2.7118 3.5651 43 1 3.1181 -3.2256 2.6746 44 1 0.3802 -4.5509 2.4349 45 1 1.7103 -5.1566 3.4507 46 1 0.3144 -6.5985 2.8626 47 1 2.1377 -9.0697 -0.9986 48 1 2.8086 -5.5592 -1.0576 49 1 5.1089 -6.1003 -0.7097 50 1 -1.0494 -11.2481 2.0419 51 1 -1.7773 -10.0463 0.9287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:25 Heat of formation + Delta-G solvation = -193.126234 kcal Electronic energy + Delta-G solvation = -30976.780232 eV Core-core repulsion = 26773.611973 eV Total energy + Delta-G solvation = -4203.168259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25481 -40.96089 -38.65641 -37.59535 -37.32460 -36.91611 -36.78484 -32.46520 -31.37976 -29.99140 -29.25912 -29.01732 -27.80371 -27.38952 -27.33741 -25.94058 -24.87009 -23.22270 -22.63233 -20.38092 -19.91945 -18.80904 -18.64168 -18.45439 -18.03212 -17.84991 -16.84921 -16.40551 -16.23281 -16.20219 -15.76577 -15.71988 -15.41575 -15.23562 -15.07174 -14.81788 -14.73186 -14.66816 -14.16759 -14.05733 -13.94721 -13.79610 -13.55095 -13.46409 -13.32431 -13.15357 -13.13159 -12.91655 -12.89701 -12.74797 -12.43678 -12.34326 -12.16278 -11.96539 -11.81192 -11.76445 -11.65548 -11.48674 -11.23061 -11.14975 -10.27080 -10.22837 -10.01417 -9.97701 -8.83473 -0.12844 0.07310 1.16316 1.45819 1.50880 1.56510 1.64613 1.83349 1.90610 2.12829 2.18304 2.30535 2.42989 2.52347 3.30151 3.51326 3.68552 3.83697 3.89951 3.98960 4.02698 4.12851 4.15091 4.16332 4.18023 4.28794 4.29998 4.38011 4.46320 4.50742 4.61593 4.72152 4.78855 4.81860 4.83192 4.83791 4.85757 4.86471 4.87167 4.89022 5.03673 5.04146 5.12673 5.13134 5.18776 5.23788 5.37549 5.44860 5.46547 5.53315 5.63929 5.69128 5.90437 6.31724 6.88945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.136 4.136 5 Si 1.319 2.681 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.635 6.635 9 C 0.077 3.923 10 C 0.040 3.960 11 O -0.293 6.293 12 C 0.170 3.830 13 C -0.195 4.195 14 C 0.070 3.930 15 C -0.022 4.022 16 C -0.074 4.074 17 C -0.116 4.116 18 C -0.064 4.064 19 O -0.557 6.557 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.246 1.246 23 H -0.265 1.265 24 O -0.324 6.324 25 C 0.205 3.795 26 O -0.319 6.319 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.164 0.836 47 H 0.147 0.853 48 H 0.091 0.909 49 H 0.396 0.604 50 H 0.161 0.839 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 2.759 1.330 3.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.449 2.551 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.595 6.595 9 C 0.002 3.998 10 C -0.034 4.034 11 O -0.206 6.206 12 C 0.123 3.877 13 C -0.214 4.214 14 C 0.025 3.975 15 C -0.066 4.066 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.174 4.174 19 O -0.365 6.365 20 Si 0.790 3.210 21 H -0.181 1.181 22 H -0.169 1.169 23 H -0.190 1.190 24 O -0.241 6.241 25 C 0.094 3.906 26 O -0.235 6.235 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.182 0.818 47 H 0.164 0.836 48 H 0.109 0.891 49 H 0.246 0.754 50 H 0.178 0.822 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.912 1.748 0.890 2.164 hybrid contribution 0.031 0.580 0.174 0.606 sum -0.881 2.328 1.064 2.707 Atomic orbital electron populations 1.21534 0.94330 1.01708 1.01770 1.25942 1.00330 1.02961 1.13363 1.21601 1.01242 0.94786 1.02141 1.21531 1.00995 1.00013 0.96807 0.76134 0.62293 0.52648 0.64024 1.27094 1.06938 1.09819 1.18114 1.27119 1.25558 1.04768 1.04527 1.85390 1.79360 1.46577 1.48165 1.22329 0.99989 0.89179 0.88266 1.23400 0.99642 0.92575 0.87811 1.86246 1.64321 1.21986 1.48023 1.18281 0.91822 0.84919 0.92679 1.20248 1.03926 0.92374 1.04891 1.19642 0.93991 0.92632 0.91235 1.19632 1.02742 0.85352 0.98853 1.19877 0.97079 0.93093 0.99163 1.18472 1.01832 0.93126 0.98309 1.24484 0.84662 1.05486 1.02751 1.86471 1.18728 1.84472 1.46873 0.85503 0.81337 0.79055 0.75068 1.18099 1.16902 1.18978 1.87361 1.42080 1.26578 1.68108 1.26148 0.88147 0.92669 0.83624 1.87344 1.60345 1.37021 1.38776 0.92035 0.93534 0.92569 0.91876 0.93280 0.91801 0.92534 0.93502 0.92129 0.90671 0.90529 0.91031 0.91312 0.90599 0.91064 0.87815 0.90731 0.89994 0.88659 0.81829 0.83609 0.89078 0.75407 0.82184 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.02 7.85 71.98 0.56 0.58 16 2 C -0.38 0.43 0.53 -10.80 -0.01 0.43 16 3 C -0.14 0.25 7.85 71.98 0.56 0.82 16 4 C -0.14 -0.02 7.85 71.98 0.56 0.54 16 5 Si 1.32 -4.81 8.45 68.60 0.58 -4.23 16 6 C -0.52 2.04 8.50 113.37 0.96 3.01 16 7 C -0.52 1.34 8.50 113.37 0.96 2.30 16 8 O -0.64 0.61 8.52 -144.35 -1.23 -0.62 16 9 C 0.08 -0.33 5.50 71.98 0.40 0.07 16 10 C 0.04 -0.10 5.12 71.98 0.37 0.27 16 11 O -0.29 -1.13 9.42 -88.64 -0.84 -1.96 16 12 C 0.17 0.97 6.66 22.48 0.15 1.12 16 13 C -0.20 -0.89 9.05 22.44 0.20 -0.69 16 14 C 0.07 0.53 7.15 22.59 0.16 0.69 16 15 C -0.02 -0.19 7.15 22.58 0.16 -0.03 16 16 C -0.07 -0.54 8.67 22.33 0.19 -0.35 16 17 C -0.12 -0.74 5.31 -19.76 -0.10 -0.85 16 18 C -0.06 -0.14 2.36 71.24 0.17 0.02 16 19 O -0.56 -1.37 12.86 -148.98 -1.92 -3.28 16 20 Si 0.97 0.80 25.49 68.60 1.75 2.55 16 21 H -0.26 -0.59 7.11 99.48 0.71 0.11 16 22 H -0.25 0.13 7.11 99.48 0.71 0.84 16 23 H -0.26 -0.96 6.73 99.48 0.67 -0.29 16 24 O -0.32 -2.47 11.41 -77.30 -0.88 -3.35 16 25 C 0.20 0.13 8.89 113.37 1.01 1.13 16 26 O -0.32 -1.94 11.40 -76.05 -0.87 -2.81 16 27 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 28 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 29 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 30 H 0.06 -0.20 7.79 -2.38 -0.02 -0.22 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 0.06 7.97 -2.39 -0.02 0.04 16 34 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 36 H 0.07 -0.41 7.48 -2.39 -0.02 -0.43 16 37 H 0.08 -0.31 7.79 -2.38 -0.02 -0.33 16 38 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.09 7.79 -2.39 -0.02 -0.11 16 40 H 0.07 -0.24 7.79 -2.39 -0.02 -0.25 16 41 H 0.07 -0.24 7.48 -2.39 -0.02 -0.26 16 42 H 0.10 -1.01 7.21 -2.38 -0.02 -1.03 16 43 H 0.07 -0.40 7.21 -2.39 -0.02 -0.42 16 44 H 0.08 -0.31 7.66 -2.39 -0.02 -0.33 16 45 H 0.10 -0.61 7.66 -2.39 -0.02 -0.63 16 46 H 0.16 -0.10 6.29 -2.92 -0.02 -0.12 16 47 H 0.15 0.74 4.88 -2.91 -0.01 0.73 16 48 H 0.09 0.00 7.82 -2.39 -0.02 -0.01 16 49 H 0.40 -2.65 8.74 -74.06 -0.65 -3.29 16 50 H 0.16 -0.92 8.14 -2.39 -0.02 -0.94 16 51 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -16.61 406.81 3.91 -12.70 By element: Atomic # 1 Polarization: -9.05 SS G_CDS: 0.99 Total: -8.05 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.32 Total: 9.06 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -5.73 Total: -12.03 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.33 Total: -1.68 kcal Total: -16.61 3.91 -12.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.431 kcal (2) G-P(sol) polarization free energy of solvation -16.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds