Wall clock time and date at job start Tue Mar 9 2021 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 6 6 C 1.42897 * 113.99742 * 60.00309 * 5 2 1 7 7 H 1.08998 * 112.85291 * 339.66628 * 6 5 2 8 8 C 1.53781 * 113.61557 * 110.86198 * 6 5 2 9 9 C 1.53956 * 87.01988 * 139.94949 * 8 6 5 10 10 H 1.09001 * 113.61067 * 89.20256 * 9 8 6 11 11 C 1.53001 * 113.66658 * 220.06599 * 9 8 6 12 12 O 1.42900 * 109.47371 * 272.56348 * 11 9 8 13 13 C 1.35976 * 117.00126 * 180.02562 * 12 11 9 14 14 C 1.38652 * 119.98807 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.95676 * 359.97438 * 14 13 12 16 16 O 1.42895 * 109.47069 * 75.00407 * 15 14 13 17 17 Si 1.86296 * 109.47284 * 195.00617 * 15 14 13 18 18 C 1.38261 * 120.08703 * 179.97438 * 14 13 12 19 19 C 1.38486 * 120.09540 * 359.97438 * 18 14 13 20 20 O 1.36602 * 131.46834 * 180.02562 * 19 18 14 21 21 C 1.43987 * 105.47602 * 197.28504 * 20 19 18 22 22 O 1.43984 * 103.73991 * 332.85627 * 21 20 19 23 23 C 1.36502 * 105.50452 * 27.15417 * 22 21 20 24 24 C 1.38487 * 131.47691 * 162.99812 * 23 22 21 25 25 C 1.53774 * 87.11008 * 334.63813 * 9 8 6 26 26 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 31 31 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 32 32 H 1.08992 * 109.47303 * 299.99548 * 4 2 1 33 33 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 34 34 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 35 35 H 1.09000 * 113.61852 * 254.52996 * 8 6 5 36 36 H 1.09007 * 113.61309 * 25.43115 * 8 6 5 37 37 H 1.09003 * 109.46937 * 32.56302 * 11 9 8 38 38 H 1.09001 * 109.47210 * 152.56173 * 11 9 8 39 39 H 1.09000 * 109.47042 * 315.00548 * 15 14 13 40 40 H 0.96700 * 114.00267 * 60.00115 * 16 15 14 41 41 H 1.48498 * 110.00418 * 180.02562 * 17 15 14 42 42 H 1.48506 * 109.99918 * 301.31933 * 17 15 14 43 43 H 1.08003 * 119.95570 * 179.97438 * 18 14 13 44 44 H 1.09002 * 110.56682 * 91.42064 * 21 20 19 45 45 H 1.08994 * 110.57303 * 214.28874 * 21 20 19 46 46 H 1.07992 * 120.01167 * 359.92302 * 24 23 22 47 47 H 1.09000 * 113.61894 * 270.80891 * 25 9 8 48 48 H 1.09000 * 113.69127 * 139.92162 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1669 6 6 1.5847 -2.0354 1.2646 7 1 0.7075 -2.2517 0.6549 8 6 2.7270 -3.0486 1.0817 9 6 2.0774 -3.8640 2.2145 10 1 1.3354 -4.5821 1.8655 11 6 3.0872 -4.4781 3.1862 12 8 3.5071 -5.7525 2.6946 13 6 4.4104 -6.4369 3.4460 14 6 4.8607 -7.6795 3.0269 15 6 4.3481 -8.2705 1.7389 16 8 4.9594 -7.6041 0.6325 17 14 4.7656 -10.0851 1.6787 18 6 5.7795 -8.3770 3.7891 19 6 6.2529 -7.8364 4.9729 20 8 7.1459 -8.3115 5.8910 21 6 6.9281 -7.5286 7.0796 22 8 6.4121 -6.2815 6.5779 23 6 5.8021 -6.5881 5.3959 24 6 4.8854 -5.8891 4.6285 25 6 1.4692 -2.5421 2.7119 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 2.7127 -3.5532 0.1156 36 1 3.7090 -2.6505 1.3379 37 1 3.9518 -3.8202 3.2756 38 1 2.6218 -4.6013 4.1642 39 1 3.2666 -8.1446 1.6865 40 1 5.9237 -7.6746 0.6148 41 1 4.2660 -10.6796 0.4130 42 1 6.2353 -10.2718 1.7815 43 1 6.1286 -9.3449 3.4608 44 1 6.1976 -8.0122 7.7282 45 1 7.8666 -7.3690 7.6104 46 1 4.5375 -4.9195 4.9524 47 1 2.1065 -2.0053 3.4147 48 1 0.4409 -2.6370 3.0605 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_1880786_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:57 Heat of formation + Delta-G solvation = -119.191543 kcal Electronic energy + Delta-G solvation = -29840.136689 eV Core-core repulsion = 25636.617441 eV Total energy + Delta-G solvation = -4203.519248 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.20692 -41.27450 -40.58321 -38.78856 -37.91568 -37.25668 -36.90636 -33.88990 -32.30037 -30.90204 -29.30904 -28.40573 -28.29022 -27.39598 -26.64448 -25.91932 -24.56376 -23.27022 -22.83733 -20.85224 -20.69670 -19.69033 -19.16070 -18.63309 -18.12611 -17.68908 -17.26561 -16.97718 -16.68062 -16.63223 -16.10412 -16.01795 -15.84258 -15.49609 -15.37374 -15.24316 -14.96423 -14.57793 -14.42291 -14.09008 -13.95769 -13.79310 -13.74908 -13.45931 -13.34541 -13.12717 -13.09056 -12.83988 -12.75034 -12.69231 -12.64914 -12.27889 -12.11626 -11.95962 -11.75371 -11.66767 -11.47218 -11.26745 -11.09348 -10.50558 -10.34636 -9.92724 -8.77099 -4.93945 -0.04785 0.15668 1.30377 1.59347 1.66693 1.97026 2.05592 2.40000 2.40873 2.73335 3.35740 3.42395 3.46481 3.53580 3.65028 3.71514 3.74074 3.77465 3.87035 3.88660 3.93348 3.96978 4.03380 4.07269 4.12290 4.21983 4.25068 4.34252 4.44716 4.52234 4.55774 4.63698 4.69034 4.73539 4.75405 4.77898 4.80813 4.88006 4.91025 4.91433 4.95812 5.01199 5.06390 5.09492 5.14430 5.24029 5.28872 5.30644 5.36557 5.95717 6.31036 6.41380 6.49824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.362 6.362 6 C 0.061 3.939 7 H 0.092 0.908 8 C -0.147 4.147 9 C -0.108 4.108 10 H 0.105 0.895 11 C 0.067 3.933 12 O -0.291 6.291 13 C 0.174 3.826 14 C -0.146 4.146 15 C -0.055 4.055 16 O -0.522 6.522 17 Si 0.684 3.316 18 C -0.064 4.064 19 C -0.003 4.003 20 O -0.306 6.306 21 C 0.213 3.787 22 O -0.306 6.306 23 C 0.084 3.916 24 C -0.195 4.195 25 C -0.126 4.126 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.373 0.627 41 H -0.254 1.254 42 H -0.259 1.259 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.134 0.866 46 H 0.143 0.857 47 H 0.093 0.907 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -0.272 1.744 3.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.004 3.996 7 H 0.110 0.890 8 C -0.185 4.185 9 C -0.126 4.126 10 H 0.123 0.877 11 C -0.008 4.008 12 O -0.203 6.203 13 C 0.127 3.873 14 C -0.148 4.148 15 C -0.165 4.165 16 O -0.328 6.328 17 Si 0.586 3.414 18 C -0.082 4.082 19 C -0.047 4.047 20 O -0.222 6.222 21 C 0.102 3.898 22 O -0.222 6.222 23 C 0.039 3.961 24 C -0.214 4.214 25 C -0.164 4.164 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.220 0.780 41 H -0.179 1.179 42 H -0.184 1.184 43 H 0.164 0.836 44 H 0.106 0.894 45 H 0.152 0.848 46 H 0.161 0.839 47 H 0.112 0.888 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.565 -0.674 1.244 2.930 hybrid contribution 0.894 0.776 -0.066 1.186 sum -1.671 0.102 1.178 2.047 Atomic orbital electron populations 1.22470 0.95661 1.02456 1.03064 1.21536 0.93090 0.93230 0.85549 1.21770 1.02024 0.93237 1.02589 1.22470 1.02333 1.00803 0.97785 1.88032 1.73772 1.23404 1.42885 1.23578 0.97159 0.81823 0.97084 0.89016 1.23647 0.99465 0.96344 0.99034 1.22325 0.97877 0.95732 0.96679 0.87666 1.22916 0.97646 0.82540 0.97692 1.86215 1.55663 1.31772 1.46681 1.18182 0.89529 0.90996 0.88614 1.19253 1.01689 0.94276 0.99561 1.24766 1.01751 1.06928 0.83012 1.86655 1.24669 1.75521 1.45919 0.95059 0.82706 0.76448 0.87226 1.19806 0.96137 1.00207 0.92053 1.19483 0.95755 0.94069 0.95417 1.87410 1.54249 1.58273 1.22306 1.25701 1.00988 0.75738 0.87410 1.87394 1.69298 1.31848 1.33663 1.19465 0.95039 0.93316 0.88313 1.20065 1.01670 1.03172 0.96484 1.23215 1.01922 0.94215 0.97020 0.91614 0.91352 0.92207 0.91772 0.91073 0.91771 0.92232 0.91558 0.91675 0.90810 0.89160 0.91449 0.91428 0.86109 0.77986 1.17915 1.18384 0.83602 0.89429 0.84847 0.83882 0.88829 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.10 8.38 37.16 0.31 0.41 16 2 C 0.10 0.04 1.12 -90.62 -0.10 -0.06 16 3 C -0.14 0.01 8.84 37.16 0.33 0.34 16 4 C -0.18 0.03 8.36 37.16 0.31 0.34 16 5 O -0.36 -0.66 10.00 -35.23 -0.35 -1.01 16 6 C 0.06 0.00 2.80 -25.92 -0.07 -0.07 16 7 H 0.09 -0.07 5.59 -51.93 -0.29 -0.36 16 8 C -0.15 -0.02 7.39 -25.83 -0.19 -0.21 16 9 C -0.11 0.09 4.01 -89.72 -0.36 -0.27 16 10 H 0.11 -0.10 8.14 -51.93 -0.42 -0.52 16 11 C 0.07 -0.03 4.58 37.16 0.17 0.14 16 12 O -0.29 -0.48 9.46 -19.66 -0.19 -0.67 16 13 C 0.17 0.31 6.66 -39.26 -0.26 0.05 16 14 C -0.15 -0.18 5.27 -104.46 -0.55 -0.73 16 15 C -0.05 -0.03 2.37 36.01 0.09 0.05 16 16 O -0.52 -1.05 12.88 -35.23 -0.45 -1.51 16 17 Si 0.68 -0.42 30.24 -169.99 -5.14 -5.57 16 18 C -0.06 -0.08 8.67 -39.48 -0.34 -0.42 16 19 C 0.00 -0.01 7.15 -39.10 -0.28 -0.29 16 20 O -0.31 -0.73 11.41 -46.03 -0.53 -1.25 16 21 C 0.21 -0.08 8.89 101.05 0.90 0.82 16 22 O -0.31 -0.74 11.40 -45.69 -0.52 -1.26 16 23 C 0.08 0.22 7.15 -39.10 -0.28 -0.06 16 24 C -0.19 -0.33 9.05 -39.32 -0.36 -0.68 16 25 C -0.13 0.12 7.47 -25.92 -0.19 -0.07 16 26 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.06 -0.05 6.23 -51.93 -0.32 -0.38 16 29 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.06 -0.01 7.01 -51.93 -0.36 -0.38 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.09 0.09 7.90 -51.93 -0.41 -0.32 16 37 H 0.07 -0.04 7.36 -51.93 -0.38 -0.42 16 38 H 0.07 -0.11 7.67 -51.93 -0.40 -0.50 16 39 H 0.12 0.04 7.82 -51.93 -0.41 -0.37 16 40 H 0.37 -0.30 8.70 45.56 0.40 0.09 16 41 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 42 H -0.26 -0.27 6.68 56.52 0.38 0.11 16 43 H 0.15 -0.03 4.85 -52.48 -0.25 -0.28 16 44 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 45 H 0.13 -0.41 8.14 -51.93 -0.42 -0.83 16 46 H 0.14 0.02 6.29 -52.49 -0.33 -0.31 16 47 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 48 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 LS Contribution 382.55 15.07 5.76 5.76 Total: 0.00 -6.35 382.55 -9.77 -16.13 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -7.48 Total: -9.91 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.88 Total: -0.71 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -2.04 Total: -5.71 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: -5.14 Total: -5.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -6.35 -9.77 -16.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.065 kcal (2) G-P(sol) polarization free energy of solvation -6.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds