Wall clock time and date at job start Tue Mar 9 2021 13:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 6 6 C 1.42897 * 113.99742 * 60.00309 * 5 2 1 7 7 H 1.08998 * 112.85291 * 339.66628 * 6 5 2 8 8 C 1.53781 * 113.61557 * 110.86198 * 6 5 2 9 9 C 1.53956 * 87.01988 * 139.94949 * 8 6 5 10 10 H 1.09001 * 113.61067 * 89.20256 * 9 8 6 11 11 C 1.53001 * 113.66658 * 220.06599 * 9 8 6 12 12 O 1.42900 * 109.47371 * 272.56348 * 11 9 8 13 13 C 1.35976 * 117.00126 * 180.02562 * 12 11 9 14 14 C 1.38652 * 119.98807 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.95676 * 359.97438 * 14 13 12 16 16 O 1.42895 * 109.47069 * 75.00407 * 15 14 13 17 17 Si 1.86296 * 109.47284 * 195.00617 * 15 14 13 18 18 C 1.38261 * 120.08703 * 179.97438 * 14 13 12 19 19 C 1.38486 * 120.09540 * 359.97438 * 18 14 13 20 20 O 1.36602 * 131.46834 * 180.02562 * 19 18 14 21 21 C 1.43987 * 105.47602 * 197.28504 * 20 19 18 22 22 O 1.43984 * 103.73991 * 332.85627 * 21 20 19 23 23 C 1.36502 * 105.50452 * 27.15417 * 22 21 20 24 24 C 1.38487 * 131.47691 * 162.99812 * 23 22 21 25 25 C 1.53774 * 87.11008 * 334.63813 * 9 8 6 26 26 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 31 31 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 32 32 H 1.08992 * 109.47303 * 299.99548 * 4 2 1 33 33 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 34 34 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 35 35 H 1.09000 * 113.61852 * 254.52996 * 8 6 5 36 36 H 1.09007 * 113.61309 * 25.43115 * 8 6 5 37 37 H 1.09003 * 109.46937 * 32.56302 * 11 9 8 38 38 H 1.09001 * 109.47210 * 152.56173 * 11 9 8 39 39 H 1.09000 * 109.47042 * 315.00548 * 15 14 13 40 40 H 0.96700 * 114.00267 * 60.00115 * 16 15 14 41 41 H 1.48498 * 110.00418 * 180.02562 * 17 15 14 42 42 H 1.48506 * 109.99918 * 301.31933 * 17 15 14 43 43 H 1.08003 * 119.95570 * 179.97438 * 18 14 13 44 44 H 1.09002 * 110.56682 * 91.42064 * 21 20 19 45 45 H 1.08994 * 110.57303 * 214.28874 * 21 20 19 46 46 H 1.07992 * 120.01167 * 359.92302 * 24 23 22 47 47 H 1.09000 * 113.61894 * 270.80891 * 25 9 8 48 48 H 1.09000 * 113.69127 * 139.92162 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1669 6 6 1.5847 -2.0354 1.2646 7 1 0.7075 -2.2517 0.6549 8 6 2.7270 -3.0486 1.0817 9 6 2.0774 -3.8640 2.2145 10 1 1.3354 -4.5821 1.8655 11 6 3.0872 -4.4781 3.1862 12 8 3.5071 -5.7525 2.6946 13 6 4.4104 -6.4369 3.4460 14 6 4.8607 -7.6795 3.0269 15 6 4.3481 -8.2705 1.7389 16 8 4.9594 -7.6041 0.6325 17 14 4.7656 -10.0851 1.6787 18 6 5.7795 -8.3770 3.7891 19 6 6.2529 -7.8364 4.9729 20 8 7.1459 -8.3115 5.8910 21 6 6.9281 -7.5286 7.0796 22 8 6.4121 -6.2815 6.5779 23 6 5.8021 -6.5881 5.3959 24 6 4.8854 -5.8891 4.6285 25 6 1.4692 -2.5421 2.7119 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 2.7127 -3.5532 0.1156 36 1 3.7090 -2.6505 1.3379 37 1 3.9518 -3.8202 3.2756 38 1 2.6218 -4.6013 4.1642 39 1 3.2666 -8.1446 1.6865 40 1 5.9237 -7.6746 0.6148 41 1 4.2660 -10.6796 0.4130 42 1 6.2353 -10.2718 1.7815 43 1 6.1286 -9.3449 3.4608 44 1 6.1976 -8.0122 7.7282 45 1 7.8666 -7.3690 7.6104 46 1 4.5375 -4.9195 4.9524 47 1 2.1065 -2.0053 3.4147 48 1 0.4409 -2.6370 3.0605 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_14598384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:51:56 Heat of formation + Delta-G solvation = -115.164141 kcal Electronic energy + Delta-G solvation = -29839.962047 eV Core-core repulsion = 25636.617441 eV Total energy + Delta-G solvation = -4203.344607 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.26930 -41.30419 -40.61862 -38.82817 -37.95577 -37.34449 -36.99011 -33.91234 -32.38597 -30.95771 -29.31915 -28.36998 -28.27849 -27.40210 -26.62397 -25.97245 -24.60570 -23.33315 -22.88632 -20.85403 -20.68578 -19.74647 -19.24161 -18.67583 -18.16626 -17.69679 -17.34406 -17.01302 -16.70170 -16.63784 -16.15941 -16.04968 -15.87727 -15.54563 -15.40343 -15.30249 -15.05637 -14.57343 -14.42552 -14.14744 -14.05271 -13.85789 -13.75730 -13.44446 -13.32192 -13.11846 -13.07458 -12.84583 -12.77321 -12.68978 -12.65940 -12.29021 -12.13945 -11.95748 -11.81484 -11.68272 -11.46792 -11.26542 -11.09465 -10.57025 -10.36631 -10.01731 -8.86600 -4.91359 -0.14589 0.05247 1.29881 1.58624 1.63359 1.94081 2.02868 2.30886 2.41099 2.74512 3.28739 3.42767 3.46112 3.56203 3.68188 3.72311 3.76043 3.78460 3.88009 3.90980 3.96150 3.98326 4.07212 4.09574 4.14827 4.25390 4.27689 4.31520 4.46485 4.53694 4.61127 4.63221 4.66998 4.77019 4.77972 4.78389 4.83557 4.85324 4.87443 4.90766 4.93126 4.99532 5.02302 5.11640 5.13942 5.19259 5.30849 5.32049 5.38753 5.89305 6.25126 6.41299 6.52467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.100 0.900 8 C -0.149 4.149 9 C -0.100 4.100 10 H 0.110 0.890 11 C 0.064 3.936 12 O -0.301 6.301 13 C 0.166 3.834 14 C -0.146 4.146 15 C -0.064 4.064 16 O -0.542 6.542 17 Si 0.768 3.232 18 C -0.063 4.063 19 C -0.016 4.016 20 O -0.321 6.321 21 C 0.205 3.795 22 O -0.322 6.322 23 C 0.070 3.930 24 C -0.198 4.198 25 C -0.120 4.120 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.383 0.617 41 H -0.296 1.296 42 H -0.277 1.277 43 H 0.159 0.841 44 H 0.109 0.891 45 H 0.159 0.841 46 H 0.154 0.846 47 H 0.090 0.910 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 -0.528 2.149 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.118 0.882 8 C -0.187 4.187 9 C -0.118 4.118 10 H 0.128 0.872 11 C -0.011 4.011 12 O -0.214 6.214 13 C 0.120 3.880 14 C -0.147 4.147 15 C -0.172 4.172 16 O -0.349 6.349 17 Si 0.672 3.328 18 C -0.081 4.081 19 C -0.060 4.060 20 O -0.238 6.238 21 C 0.094 3.906 22 O -0.239 6.239 23 C 0.025 3.975 24 C -0.217 4.217 25 C -0.158 4.158 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.232 0.768 41 H -0.224 1.224 42 H -0.204 1.204 43 H 0.176 0.824 44 H 0.126 0.874 45 H 0.176 0.824 46 H 0.171 0.829 47 H 0.108 0.892 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.141 -0.911 1.671 3.673 hybrid contribution 1.092 0.882 -0.212 1.420 sum -2.050 -0.029 1.459 2.516 Atomic orbital electron populations 1.22444 0.94830 1.02806 1.03294 1.21669 0.93787 0.93276 0.85309 1.21795 1.01551 0.93275 1.03047 1.22445 1.01688 1.00960 0.98039 1.88009 1.74300 1.24221 1.43574 1.23686 0.97170 0.81098 0.97918 0.88217 1.23616 0.99115 0.96787 0.99188 1.22282 0.97675 0.95774 0.96109 0.87193 1.23034 0.97790 0.81826 0.98415 1.86199 1.55663 1.32472 1.47070 1.18319 0.89696 0.91297 0.88727 1.19343 1.01539 0.94194 0.99644 1.25008 1.01913 1.07940 0.82387 1.86619 1.25761 1.76103 1.46457 0.94066 0.80208 0.73864 0.84628 1.19940 0.95856 1.00640 0.91649 1.19691 0.96110 0.94323 0.95920 1.87373 1.54452 1.58898 1.23121 1.26153 1.02882 0.74799 0.86741 1.87357 1.69477 1.33341 1.33689 1.19654 0.95524 0.93671 0.88697 1.20203 1.01525 1.03581 0.96375 1.23179 1.02544 0.93680 0.96367 0.92021 0.90459 0.91795 0.92535 0.89772 0.92150 0.92171 0.90589 0.92648 0.91341 0.90370 0.91572 0.90036 0.85946 0.76810 1.22378 1.20394 0.82392 0.87354 0.82399 0.82853 0.89188 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.25 8.38 71.98 0.60 0.86 16 2 C 0.10 0.10 1.12 -10.79 -0.01 0.09 16 3 C -0.14 -0.04 8.84 71.98 0.64 0.60 16 4 C -0.17 0.00 8.36 71.98 0.60 0.60 16 5 O -0.38 -1.62 10.00 -148.98 -1.49 -3.11 16 6 C 0.06 0.02 2.80 31.12 0.09 0.10 16 7 H 0.10 -0.16 5.59 -2.39 -0.01 -0.18 16 8 C -0.15 -0.17 7.39 31.18 0.23 0.06 16 9 C -0.10 0.15 4.01 -10.21 -0.04 0.11 16 10 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C 0.06 -0.04 4.58 71.98 0.33 0.29 16 12 O -0.30 -1.11 9.46 -93.28 -0.88 -1.99 16 13 C 0.17 0.66 6.66 22.48 0.15 0.81 16 14 C -0.15 -0.38 5.27 -19.76 -0.10 -0.49 16 15 C -0.06 -0.08 2.37 71.24 0.17 0.09 16 16 O -0.54 -2.45 12.88 -148.98 -1.92 -4.36 16 17 Si 0.77 -1.00 30.24 68.60 2.07 1.08 16 18 C -0.06 -0.16 8.67 22.33 0.19 0.04 16 19 C -0.02 -0.09 7.15 22.58 0.16 0.07 16 20 O -0.32 -1.55 11.41 -77.25 -0.88 -2.43 16 21 C 0.20 -0.22 8.89 113.37 1.01 0.78 16 22 O -0.32 -1.64 11.40 -76.07 -0.87 -2.51 16 23 C 0.07 0.40 7.15 22.58 0.16 0.57 16 24 C -0.20 -0.75 9.05 22.44 0.20 -0.55 16 25 C -0.12 0.25 7.47 31.12 0.23 0.49 16 26 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.06 -0.15 6.23 -2.38 -0.01 -0.16 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 -0.01 7.01 -2.39 -0.02 -0.03 16 33 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.08 0.27 7.90 -2.38 -0.02 0.26 16 37 H 0.07 -0.03 7.36 -2.39 -0.02 -0.05 16 38 H 0.08 -0.28 7.67 -2.39 -0.02 -0.30 16 39 H 0.12 0.09 7.82 -2.39 -0.02 0.07 16 40 H 0.38 -0.43 8.70 -74.06 -0.64 -1.07 16 41 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 42 H -0.28 -0.48 6.68 99.48 0.66 0.18 16 43 H 0.16 -0.11 4.85 -2.91 -0.01 -0.13 16 44 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.16 -1.10 8.14 -2.39 -0.02 -1.12 16 46 H 0.15 0.10 6.29 -2.91 -0.02 0.08 16 47 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 48 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: 0.00 -15.12 382.55 0.97 -14.15 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: 0.32 Total: -5.33 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 4.61 Total: 4.52 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -6.04 Total: -14.41 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.07 Total: 1.08 kcal Total: -15.12 0.97 -14.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_14598384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.018 kcal (2) G-P(sol) polarization free energy of solvation -15.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds