Wall clock time and date at job start Tue Mar 9 2021 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47094 * 2 1 4 4 C 1.53000 * 109.47519 * 240.00208 * 2 1 3 5 5 O 1.45199 * 109.47295 * 120.00105 * 2 1 3 6 6 C 1.34637 * 117.00088 * 60.00351 * 5 2 1 7 7 O 1.21511 * 119.99751 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00338 * 180.02562 * 6 5 2 9 9 C 1.46494 * 120.00127 * 179.97438 * 8 6 5 10 10 H 1.09005 * 112.84975 * 23.80593 * 9 8 6 11 11 C 1.53780 * 113.61477 * 154.99727 * 9 8 6 12 12 C 1.53778 * 87.08250 * 140.06709 * 11 9 8 13 13 H 1.08995 * 113.61627 * 89.19872 * 12 11 9 14 14 C 1.53005 * 113.61414 * 220.02419 * 12 11 9 15 15 O 1.42901 * 109.47048 * 184.99923 * 14 12 11 16 16 C 1.35974 * 117.00017 * 179.97438 * 15 14 12 17 17 C 1.38662 * 119.98768 * 179.97438 * 16 15 14 18 18 C 1.50699 * 119.95621 * 0.02845 * 17 16 15 19 19 O 1.42903 * 109.47152 * 284.72371 * 18 17 16 20 20 Si 1.86293 * 109.47431 * 164.72263 * 18 17 16 21 21 C 1.38259 * 120.08622 * 179.74769 * 17 16 15 22 22 C 1.38486 * 120.09459 * 0.25513 * 21 17 16 23 23 O 1.36601 * 131.46515 * 179.97438 * 22 21 17 24 24 C 1.43991 * 105.47304 * 197.31575 * 23 22 21 25 25 O 1.43983 * 103.74115 * 332.85444 * 24 23 22 26 26 C 1.36500 * 105.50176 * 27.15797 * 25 24 23 27 27 C 1.38494 * 131.47783 * 162.74523 * 26 25 24 28 28 C 1.53780 * 113.69083 * 252.53324 * 9 8 6 29 29 H 1.08996 * 109.47028 * 299.99779 * 1 2 3 30 30 H 1.08999 * 109.47358 * 59.99823 * 1 2 3 31 31 H 1.09003 * 109.46708 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47193 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47163 * 300.00297 * 3 2 1 34 34 H 1.09003 * 109.46662 * 60.00191 * 3 2 1 35 35 H 1.09000 * 109.46997 * 300.00452 * 4 2 1 36 36 H 1.08999 * 109.46830 * 59.99646 * 4 2 1 37 37 H 1.08997 * 109.47559 * 179.97438 * 4 2 1 38 38 H 0.97007 * 119.99616 * 359.97438 * 8 6 5 39 39 H 1.09004 * 113.61245 * 25.51593 * 11 9 8 40 40 H 1.08996 * 113.62083 * 254.61736 * 11 9 8 41 41 H 1.08994 * 109.47632 * 64.99637 * 14 12 11 42 42 H 1.09005 * 109.47094 * 304.99370 * 14 12 11 43 43 H 1.09008 * 109.47393 * 44.71766 * 18 17 16 44 44 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 45 45 H 1.48506 * 109.99973 * 59.99460 * 20 18 17 46 46 H 1.48493 * 110.00375 * 181.31561 * 20 18 17 47 47 H 1.08001 * 119.95160 * 180.23395 * 21 17 16 48 48 H 1.08998 * 110.57266 * 91.41948 * 24 23 22 49 49 H 1.08997 * 110.56699 * 214.14283 * 24 23 22 50 50 H 1.08000 * 120.00523 * 359.94119 * 27 26 25 51 51 H 1.09004 * 113.61285 * 105.45978 * 28 9 8 52 52 H 1.08995 * 113.61413 * 334.55842 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0673 -2.6655 2.4171 9 6 1.6733 -4.0666 2.5835 10 1 1.4211 -4.5503 1.6398 11 6 2.6462 -4.8811 3.4523 12 6 1.4086 -5.5554 4.0675 13 1 1.0848 -6.4468 3.5305 14 6 1.5190 -5.7785 5.5772 15 8 0.3801 -6.5101 6.0351 16 6 0.3225 -6.7947 7.3635 17 6 -0.7554 -7.5013 7.8748 18 6 -1.8620 -7.9538 6.9572 19 8 -2.6825 -6.8357 6.6130 20 14 -2.8964 -9.2411 7.8194 21 6 -0.8136 -7.7964 9.2243 22 6 0.2020 -7.3824 10.0699 23 8 0.3803 -7.5414 11.4149 24 6 1.3727 -6.5673 11.7886 25 8 2.1383 -6.3794 10.5838 26 6 1.2833 -6.6678 9.5596 27 6 1.3399 -6.3744 8.2072 28 6 0.6262 -4.2870 3.6880 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.6269 -2.2366 3.0833 39 1 3.2109 -4.2751 4.1609 40 1 3.2761 -5.5628 2.8809 41 1 1.5600 -4.8149 6.0849 42 1 2.4255 -6.3431 5.7957 43 1 -1.4312 -8.3808 6.0514 44 1 -3.4173 -7.0537 6.0233 45 1 -3.4893 -8.6714 9.0561 46 1 -3.9719 -9.7186 6.9138 47 1 -1.6523 -8.3501 9.6195 48 1 0.8982 -5.6336 12.0905 49 1 2.0036 -6.9516 12.5900 50 1 2.1773 -5.8204 7.8094 51 1 -0.3747 -4.4892 3.3066 52 1 0.6386 -3.5186 4.4609 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_15734236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:52:03 Heat of formation + Delta-G solvation = -147.978328 kcal Electronic energy + Delta-G solvation = -35217.818882 eV Core-core repulsion = 30345.179483 eV Total energy + Delta-G solvation = -4872.639399 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.25379 -41.93026 -41.14400 -40.15004 -38.40810 -37.84205 -37.33807 -37.09232 -35.42122 -34.23902 -32.47047 -30.92910 -29.21110 -28.39559 -28.32633 -27.40719 -26.74023 -25.94628 -25.13328 -23.78202 -23.06419 -22.25712 -21.42406 -20.58975 -19.78456 -19.10435 -18.83379 -18.70832 -18.47758 -17.97831 -17.71995 -17.21490 -17.09635 -16.66667 -16.55391 -16.16009 -16.14123 -15.71606 -15.53057 -15.39017 -15.37525 -15.26926 -14.64412 -14.54448 -14.32041 -14.05652 -14.00302 -13.85807 -13.63379 -13.46963 -13.38976 -13.19331 -13.16571 -12.97527 -12.89235 -12.88321 -12.67712 -12.53583 -12.35662 -12.20039 -11.95312 -11.90283 -11.70693 -11.46717 -11.42006 -11.13765 -11.08939 -10.43220 -10.16637 -9.99454 -8.84955 -4.92508 -0.12961 0.07039 1.15242 1.28482 1.56627 1.61872 1.71204 1.92145 2.08270 2.31655 2.42664 3.13473 3.30103 3.40198 3.41561 3.49489 3.66680 3.71731 3.74621 3.76435 3.78827 3.80705 3.91901 3.97123 3.98087 4.09135 4.21660 4.26497 4.27947 4.34033 4.46333 4.50198 4.58512 4.61145 4.63760 4.70611 4.73751 4.78031 4.79391 4.83527 4.85035 4.86115 4.87907 4.95723 5.00729 5.04842 5.07660 5.16739 5.19523 5.24381 5.30173 5.48943 5.58037 5.90229 6.27546 6.38389 6.63327 7.32139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.642 3.358 7 O -0.595 6.595 8 N -0.690 5.690 9 C 0.134 3.866 10 H 0.105 0.895 11 C -0.118 4.118 12 C -0.097 4.097 13 H 0.108 0.892 14 C 0.060 3.940 15 O -0.302 6.302 16 C 0.167 3.833 17 C -0.111 4.111 18 C -0.065 4.065 19 O -0.553 6.553 20 Si 0.757 3.243 21 C -0.064 4.064 22 C -0.019 4.019 23 O -0.322 6.322 24 C 0.204 3.796 25 O -0.318 6.318 26 C 0.070 3.930 27 C -0.193 4.193 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.418 0.582 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.393 0.607 45 H -0.293 1.293 46 H -0.280 1.280 47 H 0.152 0.848 48 H 0.101 0.899 49 H 0.163 0.837 50 H 0.163 0.837 51 H 0.062 0.938 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 0.110 0.608 4.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.123 0.877 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.126 0.874 14 C -0.014 4.014 15 O -0.215 6.215 16 C 0.120 3.880 17 C -0.112 4.112 18 C -0.174 4.174 19 O -0.362 6.362 20 Si 0.662 3.338 21 C -0.083 4.083 22 C -0.063 4.063 23 O -0.239 6.239 24 C 0.094 3.906 25 O -0.234 6.234 26 C 0.025 3.975 27 C -0.213 4.213 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.243 0.757 45 H -0.221 1.221 46 H -0.206 1.206 47 H 0.169 0.831 48 H 0.119 0.881 49 H 0.181 0.819 50 H 0.180 0.820 51 H 0.081 0.919 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.517 -0.097 0.803 3.608 hybrid contribution -0.464 1.109 -0.114 1.207 sum 3.053 1.012 0.689 3.289 Atomic orbital electron populations 1.22474 0.94178 1.03648 1.03453 1.22346 0.94363 0.92621 0.81584 1.21894 1.02502 0.90871 1.04212 1.22470 1.01681 1.02236 0.97298 1.86310 1.71544 1.23382 1.47268 1.18452 0.78638 0.80771 0.82554 1.90902 1.42208 1.70945 1.44539 1.44776 1.54899 1.12302 1.22887 1.22577 0.96937 0.78591 0.98891 0.87697 1.23346 0.95830 0.98231 0.98189 1.22255 0.97894 0.98294 0.93168 0.87353 1.23121 0.87436 0.96210 0.94668 1.86179 1.45546 1.70870 1.18931 1.18254 0.92752 0.93476 0.83473 1.18391 0.96052 1.04335 0.92446 1.24683 0.94921 0.95500 1.02270 1.86563 1.45021 1.33894 1.70772 0.94179 0.80824 0.81966 0.76810 1.19863 0.96814 1.01006 0.90570 1.19648 0.97817 1.04399 0.84464 1.87369 1.59877 1.57171 1.19477 1.26123 0.84106 0.92652 0.87720 1.87348 1.35301 1.85797 1.14946 1.19651 0.88747 0.98079 0.91047 1.20212 1.02743 1.08679 0.89628 1.23599 0.98742 0.97773 0.98437 0.92071 0.89461 0.91838 0.91085 0.88325 0.91262 0.91784 0.89495 0.91838 0.74515 0.87093 0.88552 0.90764 0.89612 0.88883 0.75682 1.22105 1.20624 0.83079 0.88132 0.81946 0.81979 0.91936 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 8.37 71.98 0.60 -0.10 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.26 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 5 O -0.37 -2.09 9.94 -55.46 -0.55 -2.64 16 6 C 0.64 4.33 8.06 129.79 1.05 5.38 16 7 O -0.59 -7.31 11.48 19.81 0.23 -7.09 16 8 N -0.69 0.15 5.36 -567.62 -3.04 -2.89 16 9 C 0.13 -0.27 4.24 45.52 0.19 -0.08 16 10 H 0.11 0.19 7.46 -2.38 -0.02 0.17 16 11 C -0.12 0.95 7.39 31.12 0.23 1.18 16 12 C -0.10 0.52 4.01 -10.26 -0.04 0.48 16 13 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C 0.06 -0.27 4.58 71.98 0.33 0.06 16 15 O -0.30 -0.56 9.45 -93.25 -0.88 -1.44 16 16 C 0.17 0.63 6.66 22.48 0.15 0.78 16 17 C -0.11 -0.49 5.31 -19.76 -0.10 -0.60 16 18 C -0.07 -0.10 2.36 71.24 0.17 0.07 16 19 O -0.55 -2.24 12.86 -148.98 -1.92 -4.16 16 20 Si 0.76 -0.45 30.19 68.60 2.07 1.62 16 21 C -0.06 -0.32 8.67 22.33 0.19 -0.13 16 22 C -0.02 -0.13 7.15 22.58 0.16 0.03 16 23 O -0.32 -1.90 11.41 -77.25 -0.88 -2.78 16 24 C 0.20 -0.10 8.89 113.37 1.01 0.90 16 25 O -0.32 -1.47 11.40 -76.05 -0.87 -2.33 16 26 C 0.07 0.40 7.15 22.59 0.16 0.56 16 27 C -0.19 -0.53 9.05 22.44 0.20 -0.33 16 28 C -0.15 0.30 7.43 31.12 0.23 0.53 16 29 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.06 0.59 5.88 -2.39 -0.01 0.58 16 32 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 36 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 37 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.42 -2.16 8.84 -92.70 -0.82 -2.98 16 39 H 0.11 -1.26 8.08 -2.39 -0.02 -1.28 16 40 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.07 -0.43 7.35 -2.39 -0.02 -0.45 16 42 H 0.09 -0.64 7.67 -2.38 -0.02 -0.66 16 43 H 0.09 -0.12 7.81 -2.38 -0.02 -0.14 16 44 H 0.39 -1.49 8.74 -74.06 -0.65 -2.14 16 45 H -0.29 -1.73 6.74 99.48 0.67 -1.06 16 46 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 47 H 0.15 0.43 4.89 -2.91 -0.01 0.42 16 48 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 49 H 0.16 -1.16 8.14 -2.39 -0.02 -1.18 16 50 H 0.16 -0.36 6.29 -2.91 -0.02 -0.38 16 51 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 52 H 0.09 -0.22 7.90 -2.39 -0.02 -0.24 16 Total: 0.00 -22.31 418.09 -0.58 -22.88 By element: Atomic # 1 Polarization: -10.73 SS G_CDS: -0.49 Total: -11.22 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.76 Total: 10.04 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -3.04 Total: -2.89 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -4.87 Total: -20.44 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.07 Total: 1.62 kcal Total: -22.31 -0.58 -22.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_15734236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.094 kcal (2) G-P(sol) polarization free energy of solvation -22.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds