Wall clock time and date at job start Tue Mar 9 2021 13:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.47160 * 2 1 4 4 C 1.86302 * 109.47127 * 239.99887 * 2 1 3 5 5 C 1.86299 * 109.47117 * 119.99979 * 2 1 3 6 6 O 1.42901 * 109.47526 * 66.59082 * 5 2 1 7 7 C 1.35979 * 117.00043 * 282.07753 * 6 5 2 8 8 C 1.38659 * 119.98335 * 353.84175 * 7 6 5 9 9 C 1.38531 * 119.99097 * 179.97438 * 8 7 6 10 10 C 1.39261 * 119.87412 * 0.05670 * 9 8 7 11 11 C 1.38528 * 119.92563 * 359.97022 * 10 9 8 12 12 C 1.38216 * 120.09553 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.95746 * 179.97438 * 12 11 10 14 14 O 1.42892 * 109.47649 * 255.00258 * 13 12 11 15 15 Si 1.86307 * 109.46883 * 15.00755 * 13 12 11 16 16 H 1.48505 * 109.47070 * 179.97438 * 15 13 12 17 17 H 1.48505 * 109.46815 * 299.99250 * 15 13 12 18 18 H 1.48495 * 109.47339 * 59.99648 * 15 13 12 19 19 O 1.36610 * 108.61491 * 180.02562 * 10 9 8 20 20 C 1.43991 * 105.47343 * 17.28971 * 19 10 9 21 21 O 1.36505 * 131.47478 * 180.02562 * 9 8 7 22 22 H 1.09003 * 109.47042 * 295.55053 * 1 2 3 23 23 H 1.08998 * 109.46642 * 55.55332 * 1 2 3 24 24 H 1.08997 * 109.47068 * 175.55549 * 1 2 3 25 25 H 1.08998 * 109.47007 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47174 * 300.00027 * 3 2 1 27 27 H 1.09002 * 109.46437 * 60.00225 * 3 2 1 28 28 H 1.08992 * 109.47193 * 305.00212 * 4 2 1 29 29 H 1.09000 * 109.46911 * 65.00398 * 4 2 1 30 30 H 1.09003 * 109.46850 * 184.99918 * 4 2 1 31 31 H 1.08999 * 109.47268 * 306.59037 * 5 2 1 32 32 H 1.09000 * 109.47361 * 186.58628 * 5 2 1 33 33 H 1.07993 * 120.00441 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.94934 * 180.02562 * 11 10 9 35 35 H 1.09006 * 109.46842 * 135.00012 * 13 12 11 36 36 H 0.96703 * 114.00577 * 179.97438 * 14 13 12 37 37 H 1.08990 * 110.57167 * 214.29968 * 20 19 10 38 38 H 1.09004 * 110.56653 * 91.42703 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5211 6 8 2.1382 -2.2627 1.4465 7 6 0.8524 -2.5945 1.7392 8 6 -0.0218 -1.6283 2.2133 9 6 -1.3319 -1.9660 2.5111 10 6 -1.7676 -3.2769 2.3344 11 6 -0.8904 -4.2388 1.8610 12 6 0.4162 -3.8995 1.5645 13 6 1.3680 -4.9486 1.0503 14 8 2.2725 -5.3226 2.0913 15 14 0.4042 -6.4442 0.4978 16 1 1.3421 -7.4778 -0.0095 17 1 -0.3619 -6.9913 1.6464 18 1 -0.5357 -6.0555 -0.5841 19 8 -3.0835 -3.3512 2.6938 20 6 -3.5568 -1.9913 2.7025 21 8 -2.3733 -1.2195 2.9819 22 1 -0.3633 0.4433 0.9272 23 1 -0.3632 0.5813 -0.8475 24 1 -0.3633 -1.0245 -0.0796 25 1 3.5740 1.7565 0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1207 2.2702 0.8901 28 1 2.0494 -1.8767 -1.5671 29 1 2.1957 -0.3153 -2.4088 30 1 3.5704 -0.9564 -1.4774 31 1 2.0276 -0.4370 2.4072 32 1 3.5676 -0.7773 1.5821 33 1 0.3186 -0.6126 2.3504 34 1 -1.2280 -5.2554 1.7234 35 1 1.9303 -4.5470 0.2072 36 1 2.9154 -5.9964 1.8307 37 1 -4.3000 -1.8495 3.4869 38 1 -3.9691 -1.7231 1.7297 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_3095236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:57:56 Heat of formation + Delta-G solvation = -122.410088 kcal Electronic energy + Delta-G solvation = -21571.939968 eV Core-core repulsion = 18312.670859 eV Total energy + Delta-G solvation = -3259.269109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.27202 -40.95830 -38.26269 -37.33588 -37.01967 -32.62132 -30.86474 -29.65034 -28.36624 -28.32061 -27.77440 -27.34108 -25.88330 -23.65219 -22.93131 -19.80856 -18.84534 -18.66196 -18.47160 -17.86152 -16.68873 -16.54978 -16.37508 -16.13294 -15.42189 -15.40279 -14.92481 -14.41453 -14.17818 -14.17024 -14.03673 -13.90664 -13.80242 -13.76893 -13.36722 -13.26975 -13.17563 -13.02134 -12.91749 -12.72915 -12.13724 -11.91701 -11.83783 -11.59921 -10.85005 -10.77175 -10.49169 -10.24109 -9.83100 -8.75842 -0.12536 0.06029 1.15335 1.45455 1.50255 1.56134 1.64088 1.81572 1.85753 1.90402 2.27535 2.35646 2.49379 2.58637 3.30490 3.51451 3.68720 3.83521 3.94869 3.99504 4.10619 4.18042 4.30034 4.41580 4.61307 4.71434 4.74881 4.78796 4.82651 4.84103 4.85590 4.87382 4.88059 4.93645 5.03166 5.18732 5.54167 5.62469 5.65287 5.89212 6.28180 6.88584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.053 2.947 3 C -0.455 4.455 4 C -0.457 4.457 5 C -0.272 4.272 6 O -0.280 6.280 7 C 0.160 3.840 8 C -0.190 4.190 9 C 0.070 3.930 10 C -0.021 4.021 11 C -0.077 4.077 12 C -0.118 4.118 13 C -0.066 4.066 14 O -0.559 6.559 15 Si 0.966 3.034 16 H -0.245 1.245 17 H -0.268 1.268 18 H -0.254 1.254 19 O -0.324 6.324 20 C 0.204 3.796 21 O -0.318 6.318 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.397 0.603 37 H 0.160 0.840 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 2.124 -3.140 4.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.245 2.755 3 C -0.563 4.563 4 C -0.564 4.564 5 C -0.390 4.390 6 O -0.192 6.192 7 C 0.113 3.887 8 C -0.209 4.209 9 C 0.025 3.975 10 C -0.065 4.065 11 C -0.095 4.095 12 C -0.119 4.119 13 C -0.176 4.176 14 O -0.368 6.368 15 Si 0.790 3.210 16 H -0.169 1.169 17 H -0.193 1.193 18 H -0.177 1.177 19 O -0.241 6.241 20 C 0.094 3.906 21 O -0.234 6.234 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.145 0.855 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.247 0.753 37 H 0.177 0.823 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.543 1.725 -2.940 3.452 hybrid contribution 0.010 0.209 0.231 0.312 sum 0.553 1.934 -2.709 3.375 Atomic orbital electron populations 1.26670 1.21743 1.04088 1.04751 0.78883 0.65785 0.65917 0.64909 1.26129 1.06907 1.18193 1.05091 1.26167 1.06703 1.08133 1.15437 1.28661 1.08347 0.84883 1.17110 1.86138 1.22455 1.27667 1.82925 1.18315 0.84382 0.92042 0.93956 1.20328 0.90529 1.02205 1.07867 1.19579 0.91203 0.89052 0.97706 1.19640 0.86009 0.94792 1.06087 1.19881 0.91376 0.99135 0.99138 1.18465 0.93069 0.92923 1.07441 1.24524 0.95929 1.03223 0.93939 1.86485 1.48914 1.63446 1.37958 0.85511 0.79555 0.76762 0.79214 1.16855 1.19294 1.17746 1.87361 1.21347 1.29845 1.85590 1.26146 0.87428 0.71523 1.05552 1.87351 1.15263 1.44011 1.76781 0.91056 0.90666 0.92105 0.90426 0.90645 0.90724 0.91508 0.90891 0.90676 0.90287 0.85521 0.81640 0.83620 0.88616 0.75324 0.82268 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.03 7.04 113.37 0.80 1.83 16 2 Si 1.05 -6.20 11.68 68.60 0.80 -5.40 16 3 C -0.46 2.64 8.65 113.37 0.98 3.62 16 4 C -0.46 1.58 8.65 113.37 0.98 2.56 16 5 C -0.27 0.82 5.31 113.37 0.60 1.42 16 6 O -0.28 -0.87 9.11 -93.31 -0.85 -1.72 16 7 C 0.16 0.86 5.76 22.48 0.13 0.99 16 8 C -0.19 -0.89 5.65 22.44 0.13 -0.76 16 9 C 0.07 0.52 7.15 22.59 0.16 0.69 16 10 C -0.02 -0.19 7.15 22.59 0.16 -0.03 16 11 C -0.08 -0.56 8.67 22.33 0.19 -0.37 16 12 C -0.12 -0.72 5.31 -19.76 -0.10 -0.82 16 13 C -0.07 -0.11 2.36 71.23 0.17 0.05 16 14 O -0.56 -1.52 12.86 -148.98 -1.92 -3.43 16 15 Si 0.97 0.35 25.49 68.60 1.75 2.10 16 16 H -0.25 0.25 7.11 99.48 0.71 0.96 16 17 H -0.27 -0.99 6.73 99.48 0.67 -0.32 16 18 H -0.25 -0.35 7.11 99.48 0.71 0.36 16 19 O -0.32 -2.52 11.41 -77.35 -0.88 -3.40 16 20 C 0.20 0.17 8.89 113.37 1.01 1.18 16 21 O -0.32 -1.97 11.40 -76.11 -0.87 -2.84 16 22 H 0.07 -0.14 6.50 -2.39 -0.02 -0.16 16 23 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 24 H 0.06 0.04 6.55 -2.39 -0.02 0.02 16 25 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 26 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 27 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 28 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.08 -0.32 6.06 -2.39 -0.01 -0.34 16 32 H 0.13 -0.77 7.96 -2.39 -0.02 -0.79 16 33 H 0.17 0.01 4.23 -2.91 -0.01 0.00 16 34 H 0.15 0.74 4.88 -2.91 -0.01 0.72 16 35 H 0.10 -0.18 7.82 -2.38 -0.02 -0.20 16 36 H 0.40 -2.67 8.74 -74.06 -0.65 -3.32 16 37 H 0.16 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -15.49 308.25 4.39 -11.10 By element: Atomic # 1 Polarization: -7.92 SS G_CDS: 1.15 Total: -6.77 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.21 Total: 10.37 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -4.52 Total: -11.39 kcal Atomic # 14 Polarization: -5.85 SS G_CDS: 2.55 Total: -3.30 kcal Total: -15.49 4.39 -11.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_3095236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.315 kcal (2) G-P(sol) polarization free energy of solvation -15.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds