Wall clock time and date at job start Tue Mar 9 2021 13:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35974 * 116.99795 * 180.02562 * 10 9 8 12 12 C 1.38651 * 119.98977 * 359.97438 * 11 10 9 13 13 C 1.38531 * 119.98965 * 179.97438 * 12 11 10 14 14 C 1.39260 * 119.88446 * 0.02562 * 13 12 11 15 15 C 1.38531 * 119.91442 * 0.04015 * 14 13 12 16 16 C 1.38217 * 120.09629 * 359.64984 * 15 14 13 17 17 C 1.50703 * 119.95444 * 180.31144 * 16 15 14 18 18 O 1.42900 * 109.47221 * 255.30828 * 17 16 15 19 19 Si 1.86301 * 109.47181 * 15.30627 * 17 16 15 20 20 H 1.48503 * 109.47083 * 300.00338 * 19 17 16 21 21 H 1.48499 * 109.47079 * 60.00465 * 19 17 16 22 22 H 1.48495 * 109.47253 * 180.02562 * 19 17 16 23 23 O 1.36603 * 108.61769 * 180.02562 * 14 13 12 24 24 C 1.43987 * 105.47213 * 342.70201 * 23 14 13 25 25 O 1.36502 * 131.46836 * 180.02562 * 13 12 11 26 26 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 29 29 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 30 30 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 33 33 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 34 34 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 35 35 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 36 36 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 38 38 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 39 39 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 40 40 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 41 41 H 1.08005 * 120.00219 * 0.02756 * 12 11 10 42 42 H 1.07994 * 119.94629 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47378 * 135.30953 * 17 16 15 44 44 H 0.96700 * 113.99946 * 180.02562 * 18 17 16 45 45 H 1.09000 * 110.57094 * 268.57539 * 24 23 14 46 46 H 1.08991 * 110.57007 * 145.70235 * 24 23 14 47 47 H 1.08001 * 119.99624 * 180.02562 * 26 8 7 48 48 H 1.07999 * 120.00008 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9738 -3.4906 6.0518 12 6 5.2237 -4.0759 7.0604 13 6 5.8583 -4.6922 8.1265 14 6 7.2494 -4.7219 8.1829 15 6 7.9945 -4.1346 7.1735 16 6 7.3592 -3.5259 6.1075 17 6 8.1729 -2.8941 5.0076 18 8 8.1397 -1.4723 5.1471 19 14 9.9352 -3.4880 5.1194 20 1 10.5034 -3.1065 6.4372 21 1 9.9697 -4.9655 4.9744 22 1 10.7371 -2.8650 4.0359 23 8 7.6258 -5.3801 9.3192 24 6 6.4573 -5.3934 10.1604 25 8 5.3631 -5.3306 9.2268 26 6 3.1780 -0.8211 3.8164 27 6 2.7118 -0.1705 2.6894 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7564 -0.0005 32 1 2.1206 2.2702 -0.8900 33 1 2.1207 2.2702 0.8900 34 1 2.1206 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5740 -0.8787 -1.5209 37 1 2.5363 -2.7986 0.5823 38 1 3.3666 -3.9577 2.5898 39 1 3.5590 -2.3806 5.9006 40 1 3.5628 -3.9213 5.0094 41 1 4.1449 -4.0520 7.0144 42 1 9.0733 -4.1570 7.2169 43 1 7.7557 -3.1741 4.0403 44 1 8.6434 -0.9990 4.4708 45 1 6.4492 -4.5246 10.8185 46 1 6.4135 -6.3150 10.7406 47 1 3.3587 -0.2656 4.7248 48 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_1880786_9276060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:04 Heat of formation + Delta-G solvation = -115.671487 kcal Electronic energy + Delta-G solvation = -29336.043456 eV Core-core repulsion = 25253.086755 eV Total energy + Delta-G solvation = -4082.956701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.17238 -41.07382 -39.88210 -38.20003 -37.22446 -36.97199 -33.08750 -32.32891 -31.88066 -30.45202 -29.57889 -28.45306 -28.42508 -27.53370 -27.25025 -25.84340 -23.88247 -23.47924 -22.94476 -21.93108 -19.82398 -18.81739 -18.63638 -18.36234 -17.90175 -17.49586 -17.00662 -16.58317 -16.25232 -16.16300 -15.53769 -15.49875 -15.33279 -15.25872 -14.77355 -14.39434 -14.36449 -14.22201 -14.18047 -14.09484 -13.93024 -13.87863 -13.76333 -13.67029 -13.38951 -13.27222 -13.26751 -13.11293 -13.05839 -12.61027 -12.55737 -12.13559 -11.95653 -11.89889 -11.74661 -11.15910 -11.05195 -10.91618 -10.83792 -10.23305 -9.88517 -9.77482 -9.69100 -8.73544 -0.00895 0.16707 0.19099 0.55251 1.16540 1.45759 1.51445 1.67233 1.69794 1.83845 1.88428 1.92485 2.24261 2.41483 2.46837 2.53416 3.03384 3.38814 3.48125 3.64888 3.74047 3.79141 3.83908 3.92527 4.04507 4.09193 4.12361 4.21083 4.22838 4.35371 4.42280 4.51380 4.66757 4.68227 4.69173 4.70660 4.74454 4.74664 4.75461 4.76415 4.92649 4.98196 5.00439 5.10702 5.15728 5.26346 5.39792 5.45385 5.49480 5.52641 5.62143 5.62739 5.97686 6.11324 6.31297 6.68482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.087 4.087 9 C 0.095 3.905 10 O -0.287 6.287 11 C 0.173 3.827 12 C -0.194 4.194 13 C 0.083 3.917 14 C -0.002 4.002 15 C -0.063 4.063 16 C -0.102 4.102 17 C -0.063 4.063 18 O -0.540 6.540 19 Si 0.938 3.062 20 H -0.246 1.246 21 H -0.246 1.246 22 H -0.252 1.252 23 O -0.306 6.306 24 C 0.213 3.787 25 O -0.306 6.306 26 C -0.103 4.103 27 C -0.092 4.092 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.379 0.621 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 0.979 -1.968 2.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.087 4.087 9 C 0.021 3.979 10 O -0.200 6.200 11 C 0.126 3.874 12 C -0.213 4.213 13 C 0.038 3.962 14 C -0.046 4.046 15 C -0.082 4.082 16 C -0.103 4.103 17 C -0.173 4.173 18 O -0.346 6.346 19 Si 0.761 3.239 20 H -0.170 1.170 21 H -0.170 1.170 22 H -0.176 1.176 23 O -0.222 6.222 24 C 0.102 3.898 25 O -0.221 6.221 26 C -0.121 4.121 27 C -0.110 4.110 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.098 0.902 44 H 0.226 0.774 45 H 0.105 0.895 46 H 0.152 0.848 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.752 0.397 -1.379 1.620 hybrid contribution -0.317 -0.020 0.224 0.388 sum -1.068 0.376 -1.155 1.618 Atomic orbital electron populations 1.26125 1.20463 1.04577 1.04506 0.78184 0.66835 0.66147 0.63714 1.26135 1.06510 1.18538 1.04567 1.26136 1.06494 1.08040 1.15068 1.27468 1.03068 0.99512 1.10160 1.21069 0.97578 0.94664 0.97715 1.21143 0.98810 0.99892 0.92575 1.19408 1.00872 0.94179 0.94280 1.21727 0.78676 1.00565 0.96958 1.86284 1.20617 1.72234 1.40836 1.18147 0.90801 0.91882 0.86547 1.20025 1.00975 1.05467 0.94877 1.19429 0.90764 0.95340 0.90659 1.19419 0.91693 1.01365 0.92144 1.19722 1.00151 0.97005 0.91274 1.18187 0.90465 1.04323 0.97318 1.24438 1.09043 0.85397 0.98470 1.86525 1.76376 1.15787 1.55868 0.85907 0.75374 0.81187 0.81480 1.17013 1.16953 1.17627 1.87405 1.35386 1.72826 1.26620 1.25694 0.70563 1.04745 0.88824 1.87384 1.36348 1.73243 1.25169 1.21154 0.98467 0.93533 0.98975 1.21077 0.97507 0.99753 0.92621 0.91162 0.91027 0.91174 0.91015 0.90959 0.91160 0.91179 0.90950 0.91026 0.85923 0.86122 0.90789 0.90825 0.83763 0.83963 0.90209 0.77416 0.89531 0.84783 0.86069 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.75 8.65 101.05 0.87 1.63 16 2 Si 1.06 -2.83 12.32 -169.99 -2.09 -4.92 16 3 C -0.45 0.85 8.54 101.05 0.86 1.72 16 4 C -0.45 0.88 8.53 101.05 0.86 1.74 16 5 C -0.36 0.12 4.59 -39.58 -0.18 -0.06 16 6 C -0.09 -0.01 9.29 -39.58 -0.37 -0.38 16 7 C -0.11 -0.08 9.70 -39.58 -0.38 -0.47 16 8 C -0.09 -0.10 5.51 -104.62 -0.58 -0.68 16 9 C 0.10 0.05 4.86 36.01 0.18 0.22 16 10 O -0.29 -0.73 9.44 -19.66 -0.19 -0.92 16 11 C 0.17 0.49 6.66 -39.26 -0.26 0.23 16 12 C -0.19 -0.46 9.05 -39.32 -0.36 -0.81 16 13 C 0.08 0.29 7.15 -39.09 -0.28 0.01 16 14 C 0.00 -0.01 7.15 -39.09 -0.28 -0.29 16 15 C -0.06 -0.19 8.67 -39.48 -0.34 -0.53 16 16 C -0.10 -0.29 5.30 -104.46 -0.55 -0.84 16 17 C -0.06 -0.07 2.36 36.01 0.09 0.02 16 18 O -0.54 -0.77 12.86 -35.23 -0.45 -1.22 16 19 Si 0.94 0.16 25.50 -169.99 -4.33 -4.18 16 20 H -0.25 -0.27 6.72 56.52 0.38 0.11 16 21 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 22 H -0.25 0.00 7.11 56.52 0.40 0.40 16 23 O -0.31 -1.01 11.41 -46.03 -0.53 -1.53 16 24 C 0.21 0.07 8.89 101.05 0.90 0.97 16 25 O -0.31 -0.90 11.40 -45.70 -0.52 -1.42 16 26 C -0.10 -0.11 9.70 -39.58 -0.38 -0.49 16 27 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 34 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.12 -0.22 7.43 -52.49 -0.39 -0.61 16 38 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 39 H 0.07 -0.04 7.60 -51.93 -0.39 -0.43 16 40 H 0.07 -0.06 7.60 -51.93 -0.39 -0.46 16 41 H 0.14 0.05 6.29 -52.48 -0.33 -0.28 16 42 H 0.14 0.23 4.88 -52.49 -0.26 -0.02 16 43 H 0.08 0.01 7.82 -51.93 -0.41 -0.40 16 44 H 0.38 -1.12 8.74 45.56 0.40 -0.72 16 45 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 46 H 0.13 -0.35 8.14 -51.93 -0.42 -0.78 16 47 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 48 H 0.12 -0.20 7.44 -52.49 -0.39 -0.59 16 LS Contribution 399.07 15.07 6.01 6.01 Total: 0.00 -7.44 399.07 -9.04 -16.48 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -6.37 Total: -9.90 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.58 Total: 1.60 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -1.68 Total: -5.09 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: -6.43 Total: -9.10 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -7.44 -9.04 -16.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_9276060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.193 kcal (2) G-P(sol) polarization free energy of solvation -7.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds