Wall clock time and date at job start Tue Mar 9 2021 13:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35974 * 116.99795 * 180.02562 * 10 9 8 12 12 C 1.38651 * 119.98977 * 359.97438 * 11 10 9 13 13 C 1.38531 * 119.98965 * 179.97438 * 12 11 10 14 14 C 1.39260 * 119.88446 * 0.02562 * 13 12 11 15 15 C 1.38531 * 119.91442 * 0.04015 * 14 13 12 16 16 C 1.38217 * 120.09629 * 359.64984 * 15 14 13 17 17 C 1.50703 * 119.95444 * 180.31144 * 16 15 14 18 18 O 1.42900 * 109.47221 * 255.30828 * 17 16 15 19 19 Si 1.86301 * 109.47181 * 15.30627 * 17 16 15 20 20 H 1.48503 * 109.47083 * 300.00338 * 19 17 16 21 21 H 1.48499 * 109.47079 * 60.00465 * 19 17 16 22 22 H 1.48495 * 109.47253 * 180.02562 * 19 17 16 23 23 O 1.36603 * 108.61769 * 180.02562 * 14 13 12 24 24 C 1.43987 * 105.47213 * 342.70201 * 23 14 13 25 25 O 1.36502 * 131.46836 * 180.02562 * 13 12 11 26 26 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 27 27 C 1.38234 * 120.00067 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 29 29 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 30 30 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 33 33 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 34 34 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 35 35 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 36 36 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 38 38 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 39 39 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 40 40 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 41 41 H 1.08005 * 120.00219 * 0.02756 * 12 11 10 42 42 H 1.07994 * 119.94629 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47378 * 135.30953 * 17 16 15 44 44 H 0.96700 * 113.99946 * 180.02562 * 18 17 16 45 45 H 1.09000 * 110.57094 * 268.57539 * 24 23 14 46 46 H 1.08991 * 110.57007 * 145.70235 * 24 23 14 47 47 H 1.08001 * 119.99624 * 180.02562 * 26 8 7 48 48 H 1.07999 * 120.00008 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9738 -3.4906 6.0518 12 6 5.2237 -4.0759 7.0604 13 6 5.8583 -4.6922 8.1265 14 6 7.2494 -4.7219 8.1829 15 6 7.9945 -4.1346 7.1735 16 6 7.3592 -3.5259 6.1075 17 6 8.1729 -2.8941 5.0076 18 8 8.1397 -1.4723 5.1471 19 14 9.9352 -3.4880 5.1194 20 1 10.5034 -3.1065 6.4372 21 1 9.9697 -4.9655 4.9744 22 1 10.7371 -2.8650 4.0359 23 8 7.6258 -5.3801 9.3192 24 6 6.4573 -5.3934 10.1604 25 8 5.3631 -5.3306 9.2268 26 6 3.1780 -0.8211 3.8164 27 6 2.7118 -0.1705 2.6894 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5739 1.7564 -0.0005 32 1 2.1206 2.2702 -0.8900 33 1 2.1207 2.2702 0.8900 34 1 2.1206 -1.9059 -1.5212 35 1 2.1207 -0.3644 -2.4112 36 1 3.5740 -0.8787 -1.5209 37 1 2.5363 -2.7986 0.5823 38 1 3.3666 -3.9577 2.5898 39 1 3.5590 -2.3806 5.9006 40 1 3.5628 -3.9213 5.0094 41 1 4.1449 -4.0520 7.0144 42 1 9.0733 -4.1570 7.2169 43 1 7.7557 -3.1741 4.0403 44 1 8.6434 -0.9990 4.4708 45 1 6.4492 -4.5246 10.8185 46 1 6.4135 -6.3150 10.7406 47 1 3.3587 -0.2656 4.7248 48 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_1880786_9276060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:03 Heat of formation + Delta-G solvation = -108.983267 kcal Electronic energy + Delta-G solvation = -29335.753433 eV Core-core repulsion = 25253.086755 eV Total energy + Delta-G solvation = -4082.666678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.30694 -41.17518 -39.88807 -38.28975 -37.37871 -37.07143 -33.09731 -32.46056 -31.85382 -30.57780 -29.41602 -28.27483 -28.25547 -27.56367 -27.29500 -25.95155 -24.01325 -23.45820 -23.07702 -21.94464 -19.95459 -18.93625 -18.74161 -18.42868 -18.00003 -17.49061 -17.06669 -16.67370 -16.31594 -16.18864 -15.58783 -15.54074 -15.44842 -15.36346 -14.87704 -14.38323 -14.31782 -14.27604 -14.09652 -14.03173 -13.98506 -13.81873 -13.70326 -13.65597 -13.37042 -13.15184 -13.11177 -13.09663 -12.94984 -12.62316 -12.54259 -12.18366 -12.01519 -11.89487 -11.79987 -11.25336 -10.90545 -10.75551 -10.73961 -10.27729 -10.04763 -9.77638 -9.66841 -8.90507 -0.18376 0.00396 0.17457 0.55144 1.13147 1.44374 1.48455 1.57651 1.85688 1.88470 1.98300 2.04513 2.23433 2.28187 2.39003 2.68613 3.03483 3.23609 3.43923 3.62469 3.70264 3.80362 3.82279 3.93461 3.97739 4.07647 4.11089 4.21442 4.25558 4.26934 4.37795 4.56036 4.57117 4.73848 4.78776 4.82214 4.86267 4.86368 4.90370 4.91271 4.91667 4.92337 4.97237 5.02697 5.11187 5.18829 5.42587 5.59336 5.60921 5.62714 5.69446 5.72861 5.83939 6.14524 6.19552 6.83978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.372 4.372 6 C -0.103 4.103 7 C -0.120 4.120 8 C -0.101 4.101 9 C 0.093 3.907 10 O -0.296 6.296 11 C 0.166 3.834 12 C -0.194 4.194 13 C 0.071 3.929 14 C -0.017 4.017 15 C -0.072 4.072 16 C -0.113 4.113 17 C -0.066 4.066 18 O -0.558 6.558 19 Si 0.973 3.027 20 H -0.262 1.262 21 H -0.258 1.258 22 H -0.246 1.246 23 O -0.322 6.322 24 C 0.205 3.795 25 O -0.318 6.318 26 C -0.120 4.120 27 C -0.103 4.103 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.396 0.604 45 H 0.105 0.895 46 H 0.163 0.837 47 H 0.125 0.875 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 1.220 -2.580 3.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.411 4.411 6 C -0.121 4.121 7 C -0.138 4.138 8 C -0.101 4.101 9 C 0.019 3.981 10 O -0.210 6.210 11 C 0.120 3.880 12 C -0.213 4.213 13 C 0.026 3.974 14 C -0.062 4.062 15 C -0.090 4.090 16 C -0.114 4.114 17 C -0.176 4.176 18 O -0.367 6.367 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.169 1.169 23 O -0.239 6.239 24 C 0.094 3.906 25 O -0.234 6.234 26 C -0.138 4.138 27 C -0.121 4.121 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.105 0.895 44 H 0.246 0.754 45 H 0.122 0.878 46 H 0.180 0.820 47 H 0.143 0.857 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.055 0.646 -1.993 2.346 hybrid contribution -0.255 -0.075 0.424 0.501 sum -1.311 0.570 -1.569 2.122 Atomic orbital electron populations 1.26286 1.21597 1.04476 1.04552 0.77169 0.65166 0.64593 0.61683 1.26287 1.06417 1.19467 1.04829 1.26275 1.06421 1.08495 1.15720 1.28035 1.02411 0.99643 1.11049 1.21387 0.97357 0.95156 0.98212 1.21376 0.99058 1.00526 0.92810 1.19550 1.01384 0.94450 0.94724 1.21859 0.77733 1.01393 0.97162 1.86265 1.21713 1.72212 1.40776 1.18264 0.91015 0.91984 0.86764 1.20208 1.01815 1.04911 0.94407 1.19610 0.90863 0.95814 0.91162 1.19635 0.92119 1.01829 0.92575 1.19892 1.00609 0.97161 0.91345 1.18491 0.90935 1.04287 0.97723 1.24542 1.09587 0.85278 0.98164 1.86473 1.77068 1.16065 1.57047 0.85410 0.74280 0.80109 0.80623 1.18669 1.18147 1.16923 1.87365 1.36783 1.72900 1.26865 1.26158 0.69086 1.07148 0.88196 1.87349 1.37395 1.73268 1.25417 1.21357 0.99008 0.93791 0.99604 1.21371 0.97407 1.00697 0.92645 0.91420 0.90698 0.91366 0.91321 0.90677 0.90969 0.90881 0.90677 0.91293 0.84242 0.85292 0.90047 0.89625 0.82200 0.83285 0.89462 0.75388 0.87767 0.81954 0.85738 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.80 8.65 113.37 0.98 2.78 16 2 Si 1.13 -6.73 12.32 68.60 0.85 -5.88 16 3 C -0.46 2.02 8.54 113.37 0.97 2.99 16 4 C -0.46 2.14 8.53 113.37 0.97 3.11 16 5 C -0.37 0.33 4.59 22.27 0.10 0.43 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.19 16 7 C -0.12 -0.23 9.70 22.27 0.22 -0.01 16 8 C -0.10 -0.30 5.51 -19.86 -0.11 -0.41 16 9 C 0.09 0.14 4.86 71.24 0.35 0.49 16 10 O -0.30 -1.73 9.44 -93.26 -0.88 -2.61 16 11 C 0.17 1.09 6.66 22.48 0.15 1.24 16 12 C -0.19 -1.06 9.05 22.44 0.20 -0.86 16 13 C 0.07 0.55 7.15 22.59 0.16 0.71 16 14 C -0.02 -0.15 7.15 22.59 0.16 0.01 16 15 C -0.07 -0.51 8.67 22.33 0.19 -0.32 16 16 C -0.11 -0.75 5.30 -19.76 -0.10 -0.85 16 17 C -0.07 -0.17 2.36 71.24 0.17 0.00 16 18 O -0.56 -1.78 12.86 -148.98 -1.92 -3.70 16 19 Si 0.97 0.56 25.50 68.60 1.75 2.31 16 20 H -0.26 -0.77 6.72 99.48 0.67 -0.10 16 21 H -0.26 -0.57 7.11 99.48 0.71 0.14 16 22 H -0.25 0.17 7.11 99.48 0.71 0.87 16 23 O -0.32 -2.38 11.41 -77.27 -0.88 -3.26 16 24 C 0.20 0.15 8.89 113.37 1.01 1.16 16 25 O -0.32 -2.02 11.40 -76.08 -0.87 -2.89 16 26 C -0.12 -0.32 9.70 22.27 0.22 -0.11 16 27 C -0.10 -0.07 9.29 22.27 0.21 0.14 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 34 H 0.07 -0.37 7.69 -2.38 -0.02 -0.39 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 37 H 0.14 -0.58 7.43 -2.91 -0.02 -0.60 16 38 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 39 H 0.08 -0.04 7.60 -2.39 -0.02 -0.06 16 40 H 0.09 -0.12 7.60 -2.39 -0.02 -0.14 16 41 H 0.16 0.18 6.29 -2.91 -0.02 0.16 16 42 H 0.15 0.69 4.88 -2.91 -0.01 0.67 16 43 H 0.09 0.05 7.82 -2.39 -0.02 0.03 16 44 H 0.40 -2.34 8.74 -74.06 -0.65 -2.98 16 45 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.16 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.12 0.11 8.06 -2.91 -0.02 0.09 16 48 H 0.14 -0.46 7.44 -2.91 -0.02 -0.48 16 Total: 0.00 -17.24 399.07 5.14 -12.10 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: 1.05 Total: -6.76 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.04 Total: 10.68 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -4.54 Total: -12.45 kcal Atomic # 14 Polarization: -6.16 SS G_CDS: 2.59 Total: -3.57 kcal Total: -17.24 5.14 -12.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_1880786_9276060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.882 kcal (2) G-P(sol) polarization free energy of solvation -17.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds