Wall clock time and date at job start Tue Mar 9 2021 13:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99752 * 2 1 4 4 C 1.38754 * 120.02694 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97129 * 0.02562 * 4 3 2 6 6 O 1.42902 * 109.46708 * 75.00607 * 5 4 3 7 7 Si 1.86298 * 109.46987 * 195.00094 * 5 4 3 8 8 C 1.38199 * 120.05422 * 179.97438 * 4 3 2 9 9 C 1.38158 * 120.10694 * 359.77058 * 8 4 3 10 10 C 1.38795 * 120.05417 * 0.50224 * 9 8 4 11 11 O 1.35896 * 120.02428 * 179.74787 * 10 9 8 12 12 C 1.42905 * 117.00039 * 359.72608 * 11 10 9 13 13 C 1.52999 * 109.46728 * 179.97438 * 12 11 10 14 14 H 1.08998 * 112.85176 * 43.80960 * 13 12 11 15 15 C 1.53786 * 113.61029 * 174.99935 * 13 12 11 16 16 C 1.53791 * 87.08068 * 139.98202 * 15 13 12 17 17 H 1.09005 * 113.60881 * 89.11713 * 16 15 13 18 18 O 1.42892 * 113.61525 * 220.01883 * 16 15 13 19 19 C 1.42896 * 114.00020 * 209.99956 * 18 16 15 20 20 C 1.52996 * 109.47239 * 59.99993 * 19 18 16 21 21 C 1.53003 * 109.47473 * 180.02562 * 19 18 16 22 22 C 1.53003 * 109.46967 * 300.00186 * 19 18 16 23 23 C 1.53780 * 113.61531 * 272.49719 * 13 12 11 24 24 C 1.38609 * 119.94750 * 359.47684 * 10 9 8 25 25 H 1.09004 * 109.46976 * 60.00562 * 1 2 3 26 26 H 1.08999 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47786 * 299.99923 * 1 2 3 28 28 H 1.09000 * 109.47018 * 315.00466 * 5 4 3 29 29 H 0.96693 * 114.00670 * 59.99497 * 6 5 4 30 30 H 1.48496 * 109.99944 * 180.02562 * 7 5 4 31 31 H 1.48505 * 109.99958 * 301.32214 * 7 5 4 32 32 H 1.07999 * 119.94365 * 180.02562 * 8 4 3 33 33 H 1.08001 * 119.96813 * 180.25343 * 9 8 4 34 34 H 1.09000 * 109.47187 * 300.00222 * 12 11 10 35 35 H 1.09001 * 109.46558 * 60.00270 * 12 11 10 36 36 H 1.08996 * 113.61664 * 254.52935 * 15 13 12 37 37 H 1.08996 * 113.61560 * 25.35421 * 15 13 12 38 38 H 1.08996 * 109.47015 * 60.00227 * 20 19 18 39 39 H 1.09004 * 109.47354 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47279 * 300.00458 * 20 19 18 41 41 H 1.09004 * 109.46571 * 59.99742 * 21 19 18 42 42 H 1.08993 * 109.47214 * 179.97438 * 21 19 18 43 43 H 1.09000 * 109.47058 * 300.00457 * 21 19 18 44 44 H 1.08996 * 109.47123 * 60.00441 * 22 19 18 45 45 H 1.09004 * 109.46974 * 179.97438 * 22 19 18 46 46 H 1.08995 * 109.47183 * 299.99730 * 22 19 18 47 47 H 1.08991 * 113.61583 * 334.56810 * 23 13 12 48 48 H 1.09000 * 113.61178 * 105.47404 * 23 13 12 49 49 H 1.07999 * 120.05423 * 180.25157 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4315 1.2842 0.0005 5 6 4.2523 0.0203 0.0005 6 8 4.2199 -0.5686 -1.3011 7 14 6.0132 0.4235 0.4559 8 6 4.0595 2.5153 0.0000 9 6 3.3097 3.6757 -0.0059 10 6 1.9234 3.6076 -0.0007 11 8 1.1865 4.7495 -0.0013 12 6 1.9045 5.9850 -0.0013 13 6 0.9135 7.1507 -0.0026 14 1 0.0866 7.0040 0.6921 15 6 1.5840 8.5293 0.1201 16 6 0.5606 9.0315 -0.9121 17 1 -0.3639 9.3995 -0.4670 18 8 1.1125 9.9332 -1.8734 19 6 0.1798 10.8946 -2.3711 20 6 -0.3492 11.7400 -1.2108 21 6 0.8758 11.8017 -3.3878 22 6 -0.9861 10.1711 -3.0480 23 6 0.4689 7.5796 -1.4108 24 6 1.2912 2.3741 -0.0006 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.8405 -0.6804 0.7268 29 1 4.5719 0.0003 -1.9992 30 1 6.8332 -0.8145 0.4589 31 1 6.5759 1.4026 -0.5086 32 1 5.1381 2.5703 0.0000 33 1 3.8027 4.6366 -0.0104 34 1 2.5310 6.0412 0.8890 35 1 2.5317 6.0407 -0.8911 36 1 1.4706 8.9839 1.1042 37 1 2.6130 8.5478 -0.2387 38 1 0.4813 12.2554 -0.7286 39 1 -1.0611 12.4731 -1.5904 40 1 -0.8452 11.0936 -0.4868 41 1 1.2524 11.1991 -4.2144 42 1 0.1642 12.5347 -3.7677 43 1 1.7067 12.3171 -2.9060 44 1 -1.4821 9.5247 -2.3240 45 1 -1.6978 10.9045 -3.4273 46 1 -0.6092 9.5689 -3.8746 47 1 1.1926 7.3390 -2.1895 48 1 -0.5447 7.2676 -1.6626 49 1 0.2126 2.3191 -0.0007 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_14598384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:58:58 Heat of formation + Delta-G solvation = -97.015486 kcal Electronic energy + Delta-G solvation = -27588.156128 eV Core-core repulsion = 23676.969219 eV Total energy + Delta-G solvation = -3911.186908 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73876 -40.97017 -39.99485 -38.53571 -38.16141 -36.93538 -33.92722 -32.28915 -31.27507 -29.48002 -28.38060 -28.35887 -28.24575 -26.64501 -26.19939 -24.27197 -23.06230 -22.33284 -20.83682 -20.65287 -19.81048 -18.47206 -17.83206 -17.56284 -17.27737 -17.12374 -16.75805 -16.66198 -16.38550 -16.03513 -15.86889 -15.75274 -15.28855 -15.11288 -14.59726 -14.45772 -14.36972 -14.18819 -13.66626 -13.55360 -13.44027 -13.30862 -13.25847 -13.02324 -12.82870 -12.74187 -12.67023 -12.63277 -12.42867 -12.20047 -12.08172 -11.97721 -11.71785 -11.66388 -11.60328 -11.33739 -11.16863 -10.51595 -10.36390 -9.69513 -9.09729 -4.90625 0.19295 0.31521 1.33457 1.58539 1.96355 1.97922 2.33127 2.56338 2.74993 3.46188 3.49180 3.56126 3.68090 3.76625 3.79527 3.83234 3.90513 3.97581 4.02976 4.07840 4.10555 4.16175 4.20082 4.27165 4.31521 4.37355 4.42645 4.53401 4.55373 4.61158 4.65579 4.67217 4.70932 4.77481 4.78384 4.78869 4.84729 4.91099 4.93390 5.01337 5.02738 5.12058 5.16999 5.23887 5.26871 5.30970 5.32263 5.38241 5.51174 6.22370 6.38553 6.41744 6.55244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.321 6.321 3 C 0.177 3.823 4 C -0.198 4.198 5 C -0.073 4.073 6 O -0.549 6.549 7 Si 0.777 3.223 8 C -0.042 4.042 9 C -0.242 4.242 10 C 0.167 3.833 11 O -0.323 6.323 12 C 0.067 3.933 13 C -0.103 4.103 14 H 0.107 0.893 15 C -0.121 4.121 16 C 0.059 3.941 17 H 0.100 0.900 18 O -0.381 6.381 19 C 0.098 3.902 20 C -0.177 4.177 21 C -0.140 4.140 22 C -0.174 4.174 23 C -0.150 4.150 24 C -0.257 4.257 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.382 0.618 30 H -0.304 1.304 31 H -0.269 1.269 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 5.084 2.520 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.234 6.234 3 C 0.130 3.870 4 C -0.199 4.199 5 C -0.181 4.181 6 O -0.357 6.357 7 Si 0.681 3.319 8 C -0.059 4.059 9 C -0.261 4.261 10 C 0.121 3.879 11 O -0.237 6.237 12 C -0.007 4.007 13 C -0.122 4.122 14 H 0.125 0.875 15 C -0.158 4.158 16 C 0.001 3.999 17 H 0.117 0.883 18 O -0.301 6.301 19 C 0.060 3.940 20 C -0.234 4.234 21 C -0.197 4.197 22 C -0.231 4.231 23 C -0.188 4.188 24 C -0.276 4.276 25 H 0.079 0.921 26 H 0.134 0.866 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.231 0.769 30 H -0.232 1.232 31 H -0.195 1.195 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.997 4.426 2.534 5.196 hybrid contribution -0.821 -0.038 -1.299 1.537 sum -1.818 4.387 1.235 4.907 Atomic orbital electron populations 1.23335 0.76693 1.05442 1.02202 1.86154 1.23114 1.26367 1.87752 1.18662 0.91717 0.83893 0.92706 1.19639 0.91206 0.96373 1.12700 1.25110 1.10863 0.94684 0.87461 1.86595 1.85640 1.46033 1.17435 0.94043 0.71016 0.78014 0.88782 1.20963 1.00733 0.90184 0.94056 1.21353 0.92115 1.00620 1.11975 1.18812 0.90371 0.85959 0.92745 1.86048 1.36592 1.13157 1.87883 1.23021 0.94809 0.80149 1.02713 1.22276 0.99106 0.92217 0.98555 0.87494 1.23197 0.99790 0.93232 0.99592 1.23682 0.97797 0.88253 0.90166 0.88264 1.88007 1.37695 1.45472 1.58895 1.21667 0.89556 0.88772 0.94041 1.22445 1.01973 1.00597 0.98378 1.21796 1.01205 0.98785 0.97901 1.22446 0.98265 1.01233 1.01195 1.23601 1.02197 0.96159 0.96798 1.20545 1.01179 0.89824 1.16056 0.92117 0.86599 0.91444 0.87494 0.76934 1.23222 1.19532 0.82738 0.82967 0.89963 0.91123 0.89255 0.88950 0.92038 0.90494 0.91814 0.92483 0.89807 0.92163 0.92143 0.90618 0.92559 0.90104 0.91232 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -2.30 9.82 -92.42 -0.91 -3.20 16 3 C 0.18 1.16 6.66 22.49 0.15 1.31 16 4 C -0.20 -0.85 5.27 -19.75 -0.10 -0.96 16 5 C -0.07 -0.29 2.37 71.24 0.17 -0.12 16 6 O -0.55 -4.00 12.88 -148.98 -1.92 -5.92 16 7 Si 0.78 -0.36 30.25 68.60 2.07 1.72 16 8 C -0.04 -0.03 8.65 22.24 0.19 0.16 16 9 C -0.24 -0.26 9.04 22.38 0.20 -0.06 16 10 C 0.17 0.72 6.68 22.49 0.15 0.87 16 11 O -0.32 -1.16 10.13 -92.39 -0.94 -2.10 16 12 C 0.07 -0.12 4.58 71.98 0.33 0.21 16 13 C -0.10 0.27 4.01 -10.27 -0.04 0.23 16 14 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 15 C -0.12 0.39 7.47 31.13 0.23 0.63 16 16 C 0.06 -0.05 2.82 31.13 0.09 0.03 16 17 H 0.10 -0.27 5.55 -2.38 -0.01 -0.28 16 18 O -0.38 -1.18 10.00 -148.98 -1.49 -2.67 16 19 C 0.10 0.00 1.11 -10.79 -0.01 -0.01 16 20 C -0.18 0.40 8.38 71.98 0.60 1.01 16 21 C -0.14 0.09 8.84 71.98 0.64 0.73 16 22 C -0.17 0.21 8.38 71.98 0.60 0.82 16 23 C -0.15 0.08 7.46 31.12 0.23 0.31 16 24 C -0.26 -1.37 8.97 22.46 0.20 -1.17 16 25 H 0.06 -0.06 7.66 -2.38 -0.02 -0.08 16 26 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.07 -0.15 7.66 -2.39 -0.02 -0.16 16 28 H 0.11 0.53 7.82 -2.39 -0.02 0.51 16 29 H 0.38 0.33 8.70 -74.06 -0.64 -0.32 16 30 H -0.30 -2.22 7.11 99.48 0.71 -1.51 16 31 H -0.27 -0.25 6.68 99.48 0.66 0.42 16 32 H 0.16 -0.55 4.85 -2.91 -0.01 -0.56 16 33 H 0.15 -0.54 6.29 -2.91 -0.02 -0.56 16 34 H 0.08 -0.38 7.67 -2.39 -0.02 -0.39 16 35 H 0.07 -0.17 7.35 -2.39 -0.02 -0.19 16 36 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.09 -0.25 8.10 -2.39 -0.02 -0.27 16 38 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.06 -0.20 6.25 -2.39 -0.01 -0.22 16 41 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 -0.10 7.02 -2.39 -0.02 -0.11 16 45 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 46 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.08 0.12 7.89 -2.39 -0.02 0.10 16 48 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.14 0.47 6.30 -2.91 -0.02 0.45 16 Total: 0.00 -14.36 386.06 1.86 -12.50 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: 0.29 Total: -5.43 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 4.75 Total: 5.09 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -5.25 Total: -13.89 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: 2.07 Total: 1.72 kcal Total: -14.36 1.86 -12.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_14598384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.513 kcal (2) G-P(sol) polarization free energy of solvation -14.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds