Wall clock time and date at job start Tue Mar 9 2021 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00044 * 2 1 4 4 C 1.38755 * 120.02667 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.97077 * 359.75256 * 4 3 2 6 6 O 1.42901 * 109.47437 * 74.99760 * 5 4 3 7 7 Si 1.86302 * 109.46886 * 194.99884 * 5 4 3 8 8 C 1.38195 * 120.05111 * 179.72977 * 4 3 2 9 9 C 1.38152 * 120.11104 * 359.97436 * 8 4 3 10 10 C 1.38789 * 120.05684 * 0.02800 * 9 8 4 11 11 O 1.35892 * 120.02817 * 179.97438 * 10 9 8 12 12 C 1.42899 * 117.00104 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.47219 * 179.97438 * 12 11 10 14 14 H 1.09005 * 112.85352 * 316.19226 * 13 12 11 15 15 C 1.53786 * 113.61491 * 87.49929 * 13 12 11 16 16 C 1.53784 * 87.07909 * 139.98223 * 15 13 12 17 17 H 1.08996 * 113.61405 * 89.11565 * 16 15 13 18 18 N 1.46500 * 113.61338 * 220.01621 * 16 15 13 19 19 C 1.34774 * 120.00337 * 252.50087 * 18 16 15 20 20 O 1.21504 * 119.99903 * 359.97438 * 19 18 16 21 21 O 1.34644 * 120.00037 * 179.97438 * 19 18 16 22 22 C 1.45193 * 116.99735 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.47271 * 60.00226 * 22 21 19 24 24 C 1.53005 * 109.47285 * 179.97438 * 22 21 19 25 25 C 1.53005 * 109.47513 * 300.00063 * 22 21 19 26 26 C 1.53780 * 87.08400 * 334.56726 * 16 15 13 27 27 C 1.38612 * 119.94427 * 359.97438 * 10 9 8 28 28 H 1.08996 * 109.46914 * 299.99692 * 1 2 3 29 29 H 1.09001 * 109.46947 * 59.99560 * 1 2 3 30 30 H 1.08998 * 109.46791 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47132 * 314.99545 * 5 4 3 32 32 H 0.96698 * 113.99435 * 59.99877 * 6 5 4 33 33 H 1.48501 * 109.99949 * 58.68066 * 7 5 4 34 34 H 1.48500 * 110.00197 * 179.97438 * 7 5 4 35 35 H 1.07999 * 119.94325 * 180.02562 * 8 4 3 36 36 H 1.07999 * 119.96848 * 180.02562 * 9 8 4 37 37 H 1.09004 * 109.46823 * 299.99402 * 12 11 10 38 38 H 1.08997 * 109.47271 * 59.99711 * 12 11 10 39 39 H 1.09001 * 113.61267 * 254.53049 * 15 13 12 40 40 H 1.08994 * 113.61624 * 25.43342 * 15 13 12 41 41 H 0.97001 * 119.99589 * 72.49464 * 18 16 15 42 42 H 1.09006 * 109.47263 * 59.99517 * 23 22 21 43 43 H 1.08995 * 109.47427 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47092 * 299.99529 * 23 22 21 45 45 H 1.09000 * 109.46760 * 59.99530 * 24 22 21 46 46 H 1.08995 * 109.47382 * 180.02562 * 24 22 21 47 47 H 1.08999 * 109.46588 * 300.00532 * 24 22 21 48 48 H 1.08993 * 109.46794 * 60.00123 * 25 22 21 49 49 H 1.09000 * 109.46788 * 180.02562 * 25 22 21 50 50 H 1.08997 * 109.47216 * 300.00077 * 25 22 21 51 51 H 1.08999 * 113.61466 * 270.89118 * 26 16 15 52 52 H 1.08994 * 113.61579 * 139.98156 * 26 16 15 53 53 H 1.07999 * 120.05541 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4316 1.2841 0.0005 5 6 4.2523 0.0202 0.0068 6 8 4.2201 -0.5751 -1.2919 7 14 6.0132 0.4255 0.4606 8 6 4.0595 2.5152 -0.0051 9 6 3.3099 3.6756 -0.0118 10 6 1.9236 3.6076 -0.0123 11 8 1.1868 4.7494 -0.0184 12 6 1.9048 5.9849 -0.0247 13 6 0.9140 7.1506 -0.0316 14 1 0.0879 6.9999 -0.7266 15 6 0.4673 7.5878 1.3735 16 6 0.5597 9.0366 0.8664 17 1 -0.3640 9.4020 0.4178 18 7 1.1242 9.9669 1.8474 19 6 0.3269 10.8615 2.4642 20 8 -0.8599 10.8969 2.2063 21 8 0.8457 11.7161 3.3662 22 6 -0.0717 12.6523 3.9906 23 6 -1.1609 11.8787 4.7363 24 6 0.6939 13.5344 4.9789 25 6 -0.7151 13.5302 2.9152 26 6 1.5846 8.5284 -0.1613 27 6 1.2914 2.3741 -0.0066 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8403 -0.6769 0.7364 32 1 4.5724 -0.0095 -1.9926 33 1 6.0571 1.0742 1.7957 34 1 6.8329 -0.8127 0.4709 35 1 5.1381 2.5701 -0.0051 36 1 3.8030 4.6364 -0.0166 37 1 2.5314 6.0454 0.8653 38 1 2.5319 6.0362 -0.9147 39 1 -0.5467 7.2773 1.6256 40 1 1.1898 7.3516 2.1546 41 1 2.0717 9.9388 2.0530 42 1 -0.7026 11.2533 5.5025 43 1 -1.8494 12.5815 5.2054 44 1 -1.7066 11.2500 4.0326 45 1 1.4702 14.0855 4.4480 46 1 0.0052 14.2370 5.4480 47 1 1.1519 12.9087 5.7449 48 1 -1.2607 12.9015 2.2116 49 1 -1.4035 14.2333 3.3841 50 1 0.0608 14.0814 2.3840 51 1 2.6127 8.5493 0.2002 52 1 1.4726 8.9773 -1.1482 53 1 0.2128 2.3191 -0.0074 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_197680_15734236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:59:05 Heat of formation + Delta-G solvation = -133.843197 kcal Electronic energy + Delta-G solvation = -32855.956719 eV Core-core repulsion = 28275.300979 eV Total energy + Delta-G solvation = -4580.655740 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.94178 -41.66952 -40.62635 -39.67741 -38.34363 -37.91002 -36.88049 -35.42019 -34.25138 -32.22880 -31.24625 -29.35714 -28.39344 -28.35554 -28.32061 -26.75235 -26.20525 -24.94194 -23.46269 -22.65714 -22.05503 -21.41948 -20.55720 -19.80990 -19.11179 -18.40064 -17.83443 -17.56363 -17.25668 -17.21931 -17.10988 -16.79489 -16.68307 -16.34189 -16.08616 -15.74143 -15.59573 -15.40418 -15.30742 -15.09111 -14.52713 -14.38372 -14.18791 -14.14391 -13.68655 -13.47314 -13.41060 -13.37873 -13.26626 -13.07763 -12.93117 -12.88772 -12.72808 -12.61424 -12.52295 -12.33964 -12.26587 -12.14335 -12.09582 -11.82030 -11.74540 -11.59656 -11.41605 -11.24773 -11.12339 -10.34618 -10.16346 -9.66880 -9.06593 -5.00496 0.22752 0.33744 1.15714 1.34507 1.67487 1.71624 2.00075 2.04091 2.34310 2.60049 3.14347 3.40399 3.49996 3.61704 3.70633 3.72126 3.74992 3.78612 3.82033 3.87538 3.92319 4.08105 4.11399 4.18116 4.27946 4.28782 4.31916 4.38963 4.44581 4.50596 4.56648 4.58803 4.61840 4.63653 4.67567 4.71692 4.74109 4.79167 4.80530 4.84982 4.85555 4.95672 5.03407 5.05716 5.08070 5.18584 5.24578 5.26255 5.29527 5.30398 5.48602 5.55083 5.58818 6.24364 6.39256 6.42406 6.85837 7.32978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.171 3.829 4 C -0.207 4.207 5 C -0.065 4.065 6 O -0.558 6.558 7 Si 0.791 3.209 8 C -0.032 4.032 9 C -0.238 4.238 10 C 0.168 3.832 11 O -0.326 6.326 12 C 0.065 3.935 13 C -0.102 4.102 14 H 0.102 0.898 15 C -0.148 4.148 16 C 0.133 3.867 17 H 0.102 0.898 18 N -0.688 5.688 19 C 0.642 3.358 20 O -0.596 6.596 21 O -0.369 6.369 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.116 4.116 27 C -0.261 4.261 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.392 0.608 33 H -0.283 1.283 34 H -0.302 1.302 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.419 0.581 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.115 0.885 52 H 0.094 0.906 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 5.189 -1.273 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.125 3.875 4 C -0.208 4.208 5 C -0.174 4.174 6 O -0.366 6.366 7 Si 0.696 3.304 8 C -0.049 4.049 9 C -0.257 4.257 10 C 0.121 3.879 11 O -0.240 6.240 12 C -0.009 4.009 13 C -0.121 4.121 14 H 0.120 0.880 15 C -0.187 4.187 16 C 0.029 3.971 17 H 0.120 0.880 18 N -0.348 5.348 19 C 0.395 3.605 20 O -0.487 6.487 21 O -0.284 6.284 22 C 0.091 3.909 23 C -0.238 4.238 24 C -0.195 4.195 25 C -0.237 4.237 26 C -0.154 4.154 27 C -0.280 4.280 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.241 0.759 33 H -0.210 1.210 34 H -0.230 1.230 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.256 0.744 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.082 0.918 51 H 0.134 0.866 52 H 0.113 0.887 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.157 4.517 -0.446 6.155 hybrid contribution -1.037 -0.374 0.431 1.184 sum 3.120 4.144 -0.016 5.187 Atomic orbital electron populations 1.23311 0.76779 1.05342 1.02137 1.86148 1.23066 1.26715 1.87882 1.18728 0.91915 0.83834 0.93072 1.19787 0.91167 0.96794 1.13042 1.25102 1.10118 0.93585 0.88594 1.86491 1.87458 1.45565 1.17045 0.94016 0.72838 0.80898 0.82649 1.20896 1.00493 0.89767 0.93776 1.21424 0.91787 1.00952 1.11540 1.18796 0.90566 0.85790 0.92726 1.86061 1.36776 1.13291 1.87878 1.23094 0.94667 0.79782 1.03403 1.22278 0.99209 0.92612 0.97969 0.88022 1.23627 1.02485 0.95050 0.97524 1.22567 0.98773 0.86769 0.88974 0.87976 1.44758 1.12214 1.34726 1.43053 1.18467 0.84290 0.79264 0.78438 1.90903 1.15929 1.74051 1.67850 1.86311 1.43189 1.45897 1.52992 1.22343 0.88788 0.87099 0.92684 1.22475 0.98969 1.01644 1.00663 1.21890 1.01197 0.98775 0.97593 1.22470 1.01774 1.00100 0.99353 1.23338 0.99561 0.92649 0.99818 1.20536 1.01034 0.90115 1.16327 0.91925 0.91771 0.86716 0.89535 0.75885 1.20957 1.22990 0.81545 0.81950 0.90089 0.89431 0.92182 0.88661 0.74390 0.92022 0.89511 0.91890 0.91052 0.88380 0.91214 0.91837 0.89533 0.91807 0.86630 0.88732 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.33 -2.59 9.82 -92.42 -0.91 -3.50 16 3 C 0.17 1.12 6.66 22.49 0.15 1.27 16 4 C -0.21 -0.70 5.27 -19.75 -0.10 -0.80 16 5 C -0.07 -0.23 2.37 71.24 0.17 -0.06 16 6 O -0.56 -2.53 12.88 -148.98 -1.92 -4.45 16 7 Si 0.79 -1.07 29.91 68.60 2.05 0.99 16 8 C -0.03 0.07 8.65 22.24 0.19 0.26 16 9 C -0.24 0.54 9.03 22.38 0.20 0.74 16 10 C 0.17 0.39 6.68 22.49 0.15 0.54 16 11 O -0.33 -0.43 10.13 -92.33 -0.94 -1.37 16 12 C 0.06 -0.40 4.58 71.98 0.33 -0.07 16 13 C -0.10 0.62 4.01 -10.26 -0.04 0.58 16 14 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 15 C -0.15 0.46 7.43 31.12 0.23 0.69 16 16 C 0.13 -0.37 4.24 45.52 0.19 -0.18 16 17 H 0.10 0.16 7.47 -2.39 -0.02 0.14 16 18 N -0.69 0.86 5.36 -567.61 -3.04 -2.18 16 19 C 0.64 3.87 8.06 129.79 1.05 4.92 16 20 O -0.60 -7.10 11.48 19.83 0.23 -6.87 16 21 O -0.37 -1.80 9.94 -55.53 -0.55 -2.35 16 22 C 0.13 0.35 1.13 -10.79 -0.01 0.33 16 23 C -0.18 -0.62 8.37 71.98 0.60 -0.01 16 24 C -0.14 0.33 8.85 71.98 0.64 0.97 16 25 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 26 C -0.12 1.06 7.39 31.12 0.23 1.29 16 27 C -0.26 -1.28 8.97 22.46 0.20 -1.08 16 28 H 0.06 -0.04 7.67 -2.39 -0.02 -0.06 16 29 H 0.06 -0.04 7.65 -2.39 -0.02 -0.06 16 30 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.09 0.66 7.83 -2.39 -0.02 0.64 16 32 H 0.39 -1.84 8.70 -74.06 -0.64 -2.48 16 33 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 34 H -0.30 -1.93 7.11 99.48 0.71 -1.23 16 35 H 0.17 -1.52 5.12 -2.91 -0.01 -1.53 16 36 H 0.16 -1.41 6.29 -2.91 -0.02 -1.43 16 37 H 0.08 -0.71 7.36 -2.39 -0.02 -0.73 16 38 H 0.09 -0.83 7.66 -2.39 -0.02 -0.85 16 39 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.09 -0.41 7.90 -2.39 -0.02 -0.43 16 41 H 0.42 -2.75 8.84 -92.71 -0.82 -3.56 16 42 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.06 0.56 5.88 -2.38 -0.01 0.55 16 45 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 49 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.12 -1.53 8.08 -2.39 -0.02 -1.55 16 52 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 53 H 0.14 0.50 6.30 -2.91 -0.02 0.48 16 Total: 0.00 -23.65 421.81 0.33 -23.33 By element: Atomic # 1 Polarization: -13.68 SS G_CDS: -0.49 Total: -14.17 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.89 Total: 10.59 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -3.04 Total: -2.18 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -4.09 Total: -18.55 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.05 Total: 0.99 kcal Total: -23.65 0.33 -23.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_197680_15734236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.517 kcal (2) G-P(sol) polarization free energy of solvation -23.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds