Wall clock time and date at job start Tue Mar 9 2021 14:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 116.99619 * 2 1 4 4 C 1.38616 * 120.02835 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.04968 * 0.02562 * 4 3 2 6 6 O 1.42903 * 109.47153 * 293.37078 * 5 4 3 7 7 Si 1.86297 * 109.47585 * 53.37403 * 5 4 3 8 8 C 1.38651 * 119.89198 * 179.97438 * 4 3 2 9 9 O 1.35896 * 120.02510 * 180.02562 * 8 4 3 10 10 C 1.42901 * 117.00101 * 179.97438 * 9 8 4 11 11 C 1.52993 * 109.47327 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.47395 * 179.97438 * 11 10 9 13 13 O 1.42975 * 109.47096 * 299.99744 * 11 10 9 14 14 C 1.43092 * 113.76887 * 178.79481 * 13 11 10 15 15 C 1.53256 * 108.94455 * 302.03198 * 14 13 11 16 16 H 1.09006 * 109.68025 * 294.65721 * 15 14 13 17 17 N 1.46500 * 109.57689 * 174.33325 * 15 14 13 18 18 C 1.34515 * 124.45965 * 300.33643 * 17 15 14 19 19 O 1.21448 * 125.71023 * 0.03388 * 18 17 15 20 20 C 1.47819 * 108.58001 * 179.90354 * 18 17 15 21 21 C 1.40945 * 105.88070 * 0.34952 * 20 18 17 22 22 C 1.38566 * 119.82318 * 179.79389 * 21 20 18 23 23 C 1.38615 * 119.71673 * 0.02562 * 22 21 20 24 24 C 1.38223 * 120.46181 * 359.97438 * 23 22 21 25 25 C 1.38573 * 134.29840 * 180.10182 * 20 18 17 26 26 C 1.34526 * 124.45676 * 120.63706 * 17 15 14 27 27 O 1.21444 * 125.71404 * 359.96717 * 26 17 15 28 28 C 1.53260 * 108.84929 * 54.52278 * 15 14 13 29 29 O 1.42965 * 109.47320 * 60.00043 * 11 10 9 30 30 C 1.38749 * 119.94500 * 359.97438 * 8 4 3 31 31 C 1.38199 * 120.05579 * 359.74994 * 30 8 4 32 32 C 1.38148 * 120.10594 * 0.51095 * 31 30 8 33 33 H 1.09000 * 109.47782 * 59.99538 * 1 2 3 34 34 H 1.09004 * 109.46848 * 179.97438 * 1 2 3 35 35 H 1.09007 * 109.47385 * 299.99631 * 1 2 3 36 36 H 1.09004 * 109.46909 * 173.37799 * 5 4 3 37 37 H 0.96692 * 114.00443 * 296.62697 * 6 5 4 38 38 H 1.48500 * 109.99682 * 65.43875 * 7 5 4 39 39 H 1.48497 * 110.00258 * 186.76090 * 7 5 4 40 40 H 1.09005 * 109.47017 * 300.00178 * 10 9 8 41 41 H 1.08999 * 109.47077 * 59.99518 * 10 9 8 42 42 H 1.08994 * 109.55503 * 182.19113 * 14 13 11 43 43 H 1.08999 * 109.64663 * 61.92210 * 14 13 11 44 44 H 1.08002 * 120.14028 * 179.97438 * 22 21 20 45 45 H 1.08001 * 119.76496 * 179.97438 * 23 22 21 46 46 H 1.07997 * 119.77321 * 179.97438 * 24 23 22 47 47 H 1.07998 * 120.14178 * 0.29733 * 25 20 18 48 48 H 1.08990 * 109.56529 * 185.64069 * 28 15 14 49 49 H 1.09005 * 109.64279 * 65.36373 * 28 15 14 50 50 H 1.08003 * 119.96933 * 180.02562 * 30 8 4 51 51 H 1.07999 * 119.94421 * 180.27162 * 31 30 8 52 52 H 1.08006 * 119.96861 * 179.76797 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4301 1.2842 -0.0005 5 6 4.2526 0.0215 -0.0017 6 8 4.0654 -0.6701 1.2347 7 14 3.7131 -1.0699 -1.4118 8 6 4.0565 2.5211 -0.0011 9 8 5.4134 2.5962 -0.0021 10 6 5.9909 3.9033 -0.0032 11 6 7.5164 3.7869 -0.0036 12 1 7.9569 4.7840 -0.0049 13 8 7.9407 3.0795 1.1641 14 6 9.3573 2.8937 1.2429 15 6 9.8300 2.1371 -0.0032 16 1 9.4095 1.1314 -0.0036 17 7 11.2929 2.0574 -0.0036 18 6 12.1132 3.1235 -0.0043 19 8 11.7639 4.2867 -0.0040 20 6 13.5109 2.6423 -0.0022 21 6 13.4343 1.2350 -0.0086 22 6 14.5972 0.4816 -0.0127 23 6 15.8285 1.1183 -0.0100 24 6 15.9036 2.4984 -0.0037 25 6 14.7488 3.2651 -0.0001 26 6 11.9926 0.9084 -0.0092 27 8 11.5191 -0.2099 -0.0141 28 6 9.3566 2.8919 -1.2501 29 8 7.9400 3.0779 -1.1706 30 6 3.2969 3.6822 -0.0016 31 6 1.9170 3.6065 -0.0068 32 6 1.2905 2.3753 -0.0009 33 1 -0.3635 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5138 0.8901 36 1 5.3063 0.2744 -0.1205 37 1 4.3738 -0.1810 2.0097 38 1 4.0240 -0.4156 -2.7081 39 1 4.3998 -2.3840 -1.3284 40 1 5.6670 4.4429 -0.8932 41 1 5.6683 4.4438 0.8867 42 1 9.6005 2.3161 2.1347 43 1 9.8521 3.8638 1.2903 44 1 14.5445 -0.5972 -0.0171 45 1 16.7353 0.5318 -0.0128 46 1 16.8688 2.9829 -0.0013 47 1 14.8135 4.3431 0.0052 48 1 9.5991 2.3132 -2.1412 49 1 9.8497 3.8628 -1.3000 50 1 3.7844 4.6459 -0.0024 51 1 1.3275 4.5114 -0.0117 52 1 0.2119 2.3187 -0.0012 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_13594088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:04 Heat of formation + Delta-G solvation = -151.591595 kcal Electronic energy + Delta-G solvation = -42314.226372 eV Core-core repulsion = 36792.692633 eV Total energy + Delta-G solvation = -5521.533739 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.149 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.77576 -41.82720 -41.27445 -40.06594 -39.97212 -39.48701 -37.83244 -37.33417 -37.16485 -37.15899 -34.62200 -32.78165 -32.20916 -31.66772 -30.46701 -29.70762 -28.14799 -27.58217 -26.60198 -26.41319 -25.53471 -24.42336 -23.54772 -22.84097 -22.58273 -22.19057 -21.07234 -19.74826 -19.21344 -19.04034 -18.82373 -18.54988 -18.06395 -17.72770 -17.65179 -17.58647 -17.01307 -16.80470 -16.77573 -16.55545 -16.47056 -16.38484 -16.21912 -15.95133 -15.64558 -15.54231 -15.48998 -15.39791 -15.11495 -15.02634 -14.86230 -14.74844 -14.32027 -14.12523 -13.85555 -13.71360 -13.45949 -13.33084 -13.12361 -12.89963 -12.74331 -12.63306 -12.54042 -12.41317 -12.34086 -12.26002 -12.22104 -11.76266 -11.69807 -11.65580 -11.29227 -11.04574 -11.03626 -10.93709 -10.30456 -10.29391 -9.43710 -9.12583 -4.84935 -1.17075 -0.10709 0.22792 0.40226 0.80298 0.83173 1.33075 1.52403 1.55010 1.78972 1.88947 2.12292 2.22027 2.38633 2.52657 2.64574 2.67581 3.00506 3.07988 3.13966 3.40031 3.48862 3.58769 3.61307 3.74869 3.82652 3.84691 3.96391 3.99499 4.00488 4.02185 4.06626 4.09508 4.10507 4.13408 4.16981 4.20138 4.33684 4.35764 4.40513 4.44139 4.46805 4.54967 4.56030 4.76130 4.78009 4.82949 4.93603 5.14173 5.19861 5.20592 5.25086 5.27919 5.33793 5.43540 5.51964 5.61260 5.66118 5.85657 6.25638 6.27628 6.43782 6.61549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.305 6.305 3 C 0.175 3.825 4 C -0.215 4.215 5 C -0.061 4.061 6 O -0.545 6.545 7 Si 0.802 3.198 8 C 0.161 3.839 9 O -0.316 6.316 10 C 0.071 3.929 11 C 0.237 3.763 12 H 0.110 0.890 13 O -0.385 6.385 14 C 0.053 3.947 15 C 0.075 3.925 16 H 0.110 0.890 17 N -0.570 5.570 18 C 0.577 3.423 19 O -0.479 6.479 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.045 4.045 23 C -0.083 4.083 24 C -0.083 4.083 25 C -0.041 4.041 26 C 0.574 3.426 27 O -0.492 6.492 28 C 0.052 3.948 29 O -0.388 6.388 30 C -0.253 4.253 31 C -0.033 4.033 32 C -0.245 4.245 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.370 0.630 38 H -0.280 1.280 39 H -0.291 1.291 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.152 0.848 45 H 0.177 0.823 46 H 0.178 0.822 47 H 0.158 0.842 48 H 0.109 0.891 49 H 0.080 0.920 50 H 0.151 0.849 51 H 0.159 0.841 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 5.991 0.394 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.219 6.219 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.170 4.170 6 O -0.350 6.350 7 Si 0.705 3.295 8 C 0.115 3.885 9 O -0.229 6.229 10 C -0.003 4.003 11 C 0.142 3.858 12 H 0.127 0.873 13 O -0.304 6.304 14 C -0.024 4.024 15 C -0.027 4.027 16 H 0.128 0.872 17 N -0.314 5.314 18 C 0.368 3.632 19 O -0.352 6.352 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.064 4.064 23 C -0.101 4.101 24 C -0.100 4.100 25 C -0.059 4.059 26 C 0.365 3.635 27 O -0.365 6.365 28 C -0.026 4.026 29 O -0.307 6.307 30 C -0.271 4.271 31 C -0.051 4.051 32 C -0.264 4.264 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.218 0.782 38 H -0.206 1.206 39 H -0.219 1.219 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.194 0.806 46 H 0.196 0.804 47 H 0.176 0.824 48 H 0.127 0.873 49 H 0.098 0.902 50 H 0.169 0.831 51 H 0.176 0.824 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.008 4.657 -0.693 5.587 hybrid contribution 1.144 1.133 0.832 1.813 sum 4.152 5.790 0.139 7.127 Atomic orbital electron populations 1.23514 0.75849 1.06053 1.02665 1.85915 1.23471 1.25763 1.86723 1.18513 0.90305 0.85652 0.92659 1.18816 0.92153 0.93711 1.17004 1.24948 0.98784 0.97204 0.96029 1.86681 1.86514 1.46283 1.15552 0.91981 0.90882 0.75074 0.71577 1.18646 0.82321 0.93481 0.94058 1.86134 1.17448 1.31142 1.88213 1.23163 0.88100 0.83846 1.05212 1.24007 0.93590 0.92733 0.75461 0.87298 1.88235 1.21792 1.77887 1.42511 1.22988 0.81366 1.00938 0.97116 1.22557 0.77171 1.03844 0.99114 0.87186 1.46477 1.07628 1.09084 1.68254 1.18729 0.86907 0.83961 0.73573 1.90787 1.81977 1.17493 1.44903 1.20445 0.93559 0.94108 1.08114 1.20414 0.92618 0.95063 1.08277 1.21165 0.89887 1.01518 0.93805 1.21963 0.97913 0.95427 0.94764 1.21985 0.99457 0.93930 0.94647 1.21183 0.88999 1.02254 0.93492 1.18865 0.88110 0.83043 0.73466 1.90830 1.77442 1.23002 1.45187 1.23004 0.81363 1.01000 0.97187 1.88238 1.21858 1.77878 1.42767 1.21418 0.95544 0.97317 1.12864 1.21149 0.93546 0.98318 0.92112 1.21486 1.01561 0.91451 1.11901 0.90887 0.86128 0.91493 0.92433 0.78243 1.20649 1.21872 0.87375 0.87152 0.87046 0.90272 0.83049 0.80590 0.80420 0.82422 0.87271 0.90220 0.83122 0.82368 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.31 -1.23 7.27 -92.40 -0.67 -1.90 16 3 C 0.18 1.02 6.11 22.49 0.14 1.15 16 4 C -0.22 -2.05 4.66 -19.68 -0.09 -2.15 16 5 C -0.06 -0.75 2.63 71.24 0.19 -0.56 16 6 O -0.54 -6.55 12.50 -148.98 -1.86 -8.41 16 7 Si 0.80 9.09 30.33 68.60 2.08 11.17 16 8 C 0.16 1.26 6.66 22.49 0.15 1.41 16 9 O -0.32 -2.88 8.70 -72.80 -0.63 -3.52 16 10 C 0.07 0.12 4.83 71.98 0.35 0.46 16 11 C 0.24 0.90 3.59 71.98 0.26 1.16 16 12 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 13 O -0.38 -2.75 10.43 -121.89 -1.27 -4.02 16 14 C 0.05 0.26 6.32 72.07 0.46 0.71 16 15 C 0.08 0.47 3.08 45.16 0.14 0.61 16 16 H 0.11 1.08 7.59 -2.38 -0.02 1.06 16 17 N -0.57 -3.15 2.53 -739.56 -1.87 -5.03 16 18 C 0.58 2.54 7.35 86.82 0.64 3.18 16 19 O -0.48 -3.39 15.16 -3.55 -0.05 -3.45 16 20 C -0.16 -0.08 6.41 -20.00 -0.13 -0.21 16 21 C -0.16 -0.27 6.41 -20.00 -0.13 -0.40 16 22 C -0.05 0.17 10.09 22.44 0.23 0.40 16 23 C -0.08 0.79 10.03 22.36 0.22 1.01 16 24 C -0.08 0.83 10.04 22.36 0.22 1.06 16 25 C -0.04 0.22 10.09 22.44 0.23 0.45 16 26 C 0.57 4.16 8.02 86.82 0.70 4.85 16 27 O -0.49 -6.62 17.44 -3.54 -0.06 -6.68 16 28 C 0.05 0.27 6.32 72.07 0.46 0.73 16 29 O -0.39 -3.04 10.43 -121.89 -1.27 -4.31 16 30 C -0.25 -0.53 9.04 22.38 0.20 -0.33 16 31 C -0.03 0.01 10.04 22.24 0.22 0.23 16 32 C -0.25 -0.24 9.03 22.38 0.20 -0.04 16 33 H 0.07 -0.54 7.66 -2.39 -0.02 -0.55 16 34 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.07 -0.41 7.66 -2.38 -0.02 -0.43 16 36 H 0.06 0.88 6.84 -2.38 -0.02 0.87 16 37 H 0.37 2.62 9.10 -74.06 -0.67 1.94 16 38 H -0.28 -4.09 7.11 99.48 0.71 -3.38 16 39 H -0.29 -4.86 7.11 99.48 0.71 -4.15 16 40 H 0.11 -0.26 7.66 -2.38 -0.02 -0.28 16 41 H 0.11 -0.31 7.66 -2.39 -0.02 -0.33 16 42 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 0.31 6.67 -2.39 -0.02 0.29 16 44 H 0.15 -0.87 8.06 -2.91 -0.02 -0.90 16 45 H 0.18 -2.74 8.06 -2.91 -0.02 -2.76 16 46 H 0.18 -2.92 8.06 -2.91 -0.02 -2.94 16 47 H 0.16 -1.34 8.06 -2.91 -0.02 -1.36 16 48 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.08 0.33 6.68 -2.38 -0.02 0.32 16 50 H 0.15 -0.49 6.29 -2.91 -0.02 -0.51 16 51 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 52 H 0.16 -0.71 6.29 -2.91 -0.02 -0.73 16 Total: 0.00 -27.02 432.53 0.51 -26.51 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: 0.37 Total: -15.16 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.76 Total: 14.79 kcal Atomic # 7 Polarization: -3.15 SS G_CDS: -1.87 Total: -5.03 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -5.83 Total: -32.29 kcal Atomic # 14 Polarization: 9.09 SS G_CDS: 2.08 Total: 11.17 kcal Total: -27.02 0.51 -26.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_13594088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.077 kcal (2) G-P(sol) polarization free energy of solvation -27.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds