Wall clock time and date at job start Tue Mar 9 2021 14:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 116.99969 * 2 1 4 4 C 1.38751 * 120.02693 * 0.02562 * 3 2 1 5 5 C 1.38197 * 120.05254 * 180.02562 * 4 3 2 6 6 C 1.38153 * 120.11294 * 359.94885 * 5 4 3 7 7 C 1.38795 * 120.05335 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.02758 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00130 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47433 * 180.02562 * 9 8 7 11 11 H 1.09004 * 112.84485 * 316.20211 * 10 9 8 12 12 C 1.53784 * 113.68732 * 87.46481 * 10 9 8 13 13 C 1.53786 * 87.07771 * 139.99724 * 12 10 9 14 14 H 1.08995 * 113.68971 * 89.12884 * 13 12 10 15 15 O 1.42905 * 113.61041 * 220.02445 * 13 12 10 16 16 C 1.42904 * 113.99284 * 247.49642 * 15 13 12 17 17 C 1.52991 * 109.47487 * 60.00029 * 16 15 13 18 18 C 1.52999 * 109.47075 * 299.99800 * 16 15 13 19 19 C 1.52996 * 109.46710 * 180.02562 * 16 15 13 20 20 C 1.53773 * 113.61568 * 185.00095 * 10 9 8 21 21 C 1.38616 * 119.94472 * 0.26558 * 7 6 5 22 22 C 1.50692 * 120.05512 * 179.75400 * 21 7 6 23 23 O 1.42902 * 109.47621 * 124.16217 * 22 21 7 24 24 Si 1.86299 * 109.46981 * 244.16256 * 22 21 7 25 25 H 1.09004 * 109.47455 * 300.00060 * 1 2 3 26 26 H 1.09004 * 109.47432 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.97324 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.94392 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.97195 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47111 * 60.00628 * 9 8 7 32 32 H 1.09005 * 109.47295 * 300.00919 * 9 8 7 33 33 H 1.09002 * 113.61511 * 25.44822 * 12 10 9 34 34 H 1.08994 * 113.61272 * 254.54108 * 12 10 9 35 35 H 1.09006 * 109.47317 * 300.00095 * 17 16 15 36 36 H 1.09002 * 109.47676 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47588 * 59.99675 * 17 16 15 38 38 H 1.08996 * 109.47540 * 180.02562 * 18 16 15 39 39 H 1.09005 * 109.47565 * 300.00178 * 18 16 15 40 40 H 1.09002 * 109.47263 * 60.00366 * 18 16 15 41 41 H 1.08998 * 109.47449 * 299.99544 * 19 16 15 42 42 H 1.09008 * 109.47698 * 60.00005 * 19 16 15 43 43 H 1.09005 * 109.47186 * 179.97438 * 19 16 15 44 44 H 1.09003 * 113.61402 * 105.38908 * 20 10 9 45 45 H 1.09000 * 113.62149 * 334.48495 * 20 10 9 46 46 H 1.09001 * 109.47499 * 4.15892 * 22 21 7 47 47 H 0.96699 * 113.99963 * 294.52965 * 23 22 21 48 48 H 1.48500 * 110.00198 * 294.40602 * 24 22 21 49 49 H 1.48502 * 110.00214 * 55.72781 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9176 3.6065 0.0000 6 6 3.2971 3.6821 0.0000 7 6 4.0569 2.5207 0.0000 8 8 5.4138 2.5957 0.0005 9 6 5.9913 3.9028 0.0005 10 6 7.5168 3.7864 0.0005 11 1 7.8837 3.0313 0.6957 12 6 8.1281 3.6773 -1.4064 13 6 9.2478 4.6052 -0.9062 14 1 10.0886 4.0752 -0.4588 15 8 9.6549 5.5809 -1.8678 16 6 10.9820 5.3907 -2.3625 17 6 11.0833 4.0216 -3.0378 18 6 11.9745 5.4607 -1.2002 19 6 11.3093 6.4866 -3.3786 20 6 8.2378 5.1391 0.1233 21 6 3.4306 1.2841 -0.0056 22 6 4.2531 0.0215 -0.0112 23 8 3.8792 -0.7957 1.0999 24 14 3.9507 -0.9096 -1.5963 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2123 2.3184 0.0014 29 1 1.3281 4.5115 0.0000 30 1 3.7846 4.6459 0.0000 31 1 5.6678 4.4429 0.8903 32 1 5.6683 4.4427 -0.8897 33 1 7.5096 4.1206 -2.1868 34 1 8.4719 2.6736 -1.6564 35 1 10.8503 3.2410 -2.3135 36 1 12.0957 3.8764 -3.4148 37 1 10.3763 3.9717 -3.8658 38 1 12.9868 5.3161 -1.5775 39 1 11.9024 6.4362 -0.7190 40 1 11.7415 4.6802 -0.4759 41 1 10.6024 6.4372 -4.2068 42 1 11.2373 7.4620 -2.8972 43 1 12.3218 6.3419 -3.7557 44 1 8.6703 5.3155 1.1081 45 1 7.6494 5.9821 -0.2389 46 1 5.3102 0.2761 0.0645 47 1 4.0872 -0.4078 1.9610 48 1 2.5430 -1.3796 -1.6486 49 1 4.2379 -0.0352 -2.7617 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_215219_14598384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:09 Heat of formation + Delta-G solvation = -103.625869 kcal Electronic energy + Delta-G solvation = -28189.840005 eV Core-core repulsion = 24278.366449 eV Total energy + Delta-G solvation = -3911.473556 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75927 -40.98148 -39.98222 -38.43570 -37.49025 -37.06852 -33.93304 -32.60329 -30.62370 -29.45258 -28.45520 -28.41527 -28.14354 -26.69805 -26.43907 -24.20004 -22.68899 -22.41232 -20.85958 -20.65804 -19.58603 -18.37290 -17.91248 -17.51700 -17.24323 -17.16303 -16.72102 -16.51075 -16.45745 -16.06508 -15.78554 -15.42368 -15.24894 -14.96676 -14.60196 -14.44543 -14.07301 -13.84753 -13.57518 -13.53711 -13.46305 -13.35621 -13.10894 -13.08107 -12.88622 -12.75934 -12.68635 -12.61880 -12.29080 -12.25037 -12.07269 -11.83814 -11.75110 -11.64667 -11.40149 -11.24335 -11.06152 -10.84850 -10.38121 -9.34895 -9.12675 -4.64495 0.25306 0.41216 1.67571 1.77778 1.93432 2.37044 2.54999 2.68534 2.74271 3.39299 3.49248 3.63685 3.70519 3.73666 3.85586 3.88028 3.91904 3.95357 3.99317 4.04694 4.09157 4.15042 4.17677 4.21797 4.24968 4.32726 4.38135 4.46513 4.53359 4.57691 4.60307 4.62091 4.69754 4.72457 4.73797 4.77900 4.85474 4.87891 4.88707 4.96049 5.06769 5.10207 5.16032 5.25500 5.25912 5.27683 5.32671 5.41749 5.47925 6.29351 6.38060 6.40337 6.81758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.179 3.821 4 C -0.249 4.249 5 C -0.034 4.034 6 C -0.248 4.248 7 C 0.180 3.820 8 O -0.306 6.306 9 C 0.072 3.928 10 C -0.110 4.110 11 H 0.105 0.895 12 C -0.148 4.148 13 C 0.062 3.938 14 H 0.093 0.907 15 O -0.362 6.362 16 C 0.105 3.895 17 C -0.177 4.177 18 C -0.179 4.179 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.193 4.193 22 C -0.056 4.056 23 O -0.530 6.530 24 Si 0.740 3.260 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.360 0.640 48 H -0.241 1.241 49 H -0.262 1.262 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 1.211 0.608 2.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.204 6.204 3 C 0.133 3.867 4 C -0.267 4.267 5 C -0.052 4.052 6 C -0.267 4.267 7 C 0.134 3.866 8 O -0.219 6.219 9 C -0.003 4.003 10 C -0.128 4.128 11 H 0.123 0.877 12 C -0.186 4.186 13 C 0.004 3.996 14 H 0.111 0.889 15 O -0.281 6.281 16 C 0.066 3.934 17 C -0.234 4.234 18 C -0.237 4.237 19 C -0.196 4.196 20 C -0.164 4.164 21 C -0.195 4.195 22 C -0.165 4.165 23 O -0.334 6.334 24 Si 0.638 3.362 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.206 0.794 48 H -0.165 1.165 49 H -0.187 1.187 Dipole moment (debyes) X Y Z Total from point charges 1.304 0.580 -0.671 1.577 hybrid contribution -0.490 1.770 1.152 2.168 sum 0.814 2.350 0.481 2.533 Atomic orbital electron populations 1.23147 0.78254 1.04383 1.01395 1.86275 1.21240 1.25554 1.87359 1.18493 0.90874 0.84876 0.92502 1.21194 1.00389 0.92068 1.13097 1.20774 0.93759 0.97279 0.93406 1.21170 0.94918 0.97454 1.13119 1.18359 0.82518 0.92548 0.93218 1.86027 1.16736 1.31330 1.87854 1.22883 0.92950 0.82622 1.01865 1.22327 0.91917 0.99284 0.99303 0.87661 1.23629 0.98054 1.00446 0.96483 1.23566 0.95254 0.90570 0.90164 0.88920 1.88037 1.30517 1.51141 1.58405 1.21541 0.82691 0.95566 0.93628 1.22470 1.02806 0.96591 1.01529 1.22473 0.99780 1.02749 0.98651 1.21772 1.01781 0.97876 0.98204 1.23228 0.97131 0.96648 0.99407 1.18835 0.91332 0.94154 1.15177 1.24854 0.98586 0.92406 1.00632 1.86763 1.85916 1.45311 1.15454 0.94134 0.84667 0.85452 0.71934 0.92324 0.92652 0.87856 0.84994 0.85162 0.85048 0.91459 0.91433 0.89113 0.90772 0.92240 0.91500 0.91662 0.91323 0.91621 0.92210 0.91768 0.91780 0.91037 0.90348 0.88822 0.90560 0.79393 1.16495 1.18732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.29 -1.21 7.33 -30.92 -0.23 -1.44 16 3 C 0.18 0.72 6.11 -39.24 -0.24 0.48 16 4 C -0.25 -0.57 9.04 -39.41 -0.36 -0.93 16 5 C -0.03 -0.05 10.03 -39.63 -0.40 -0.45 16 6 C -0.25 -0.47 9.04 -39.41 -0.36 -0.83 16 7 C 0.18 0.58 6.66 -39.24 -0.26 0.32 16 8 O -0.31 -0.70 8.91 -19.41 -0.17 -0.87 16 9 C 0.07 -0.01 4.58 37.16 0.17 0.16 16 10 C -0.11 0.10 4.01 -89.81 -0.36 -0.26 16 11 H 0.11 -0.12 8.14 -51.93 -0.42 -0.55 16 12 C -0.15 0.04 7.47 -25.91 -0.19 -0.16 16 13 C 0.06 -0.02 2.82 -25.91 -0.07 -0.09 16 14 H 0.09 -0.10 5.54 -51.93 -0.29 -0.39 16 15 O -0.36 -0.57 10.00 -35.23 -0.35 -0.92 16 16 C 0.10 0.01 1.11 -90.63 -0.10 -0.09 16 17 C -0.18 0.10 8.38 37.15 0.31 0.41 16 18 C -0.18 0.15 8.38 37.16 0.31 0.46 16 19 C -0.14 0.04 8.84 37.16 0.33 0.37 16 20 C -0.13 0.14 7.47 -25.92 -0.19 -0.05 16 21 C -0.19 -0.79 4.50 -104.33 -0.47 -1.26 16 22 C -0.06 -0.18 2.63 36.00 0.09 -0.09 16 23 O -0.53 -1.75 11.86 -46.73 -0.55 -2.31 16 24 Si 0.74 2.14 31.66 -169.99 -5.38 -3.24 16 25 H 0.06 -0.05 7.66 -51.93 -0.40 -0.45 16 26 H 0.05 -0.03 7.66 -51.93 -0.40 -0.43 16 27 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.13 0.04 6.29 -52.49 -0.33 -0.29 16 29 H 0.13 -0.12 8.06 -52.48 -0.42 -0.54 16 30 H 0.13 -0.01 6.29 -52.48 -0.33 -0.34 16 31 H 0.07 -0.07 7.66 -51.93 -0.40 -0.47 16 32 H 0.07 -0.03 7.37 -51.93 -0.38 -0.41 16 33 H 0.09 0.06 7.90 -51.93 -0.41 -0.35 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.06 -0.05 7.02 -51.93 -0.36 -0.41 16 36 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 39 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 40 H 0.06 -0.07 6.24 -51.93 -0.32 -0.40 16 41 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 42 H 0.06 0.00 8.14 -51.92 -0.42 -0.42 16 43 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 44 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 45 H 0.09 -0.07 8.10 -51.93 -0.42 -0.49 16 46 H 0.08 0.18 6.83 -51.93 -0.35 -0.18 16 47 H 0.36 0.21 9.11 45.56 0.42 0.63 16 48 H -0.24 -1.30 6.46 56.52 0.37 -0.94 16 49 H -0.26 -1.29 7.11 56.52 0.40 -0.89 16 LS Contribution 385.49 15.07 5.81 5.81 Total: 0.00 -5.71 385.49 -9.96 -15.67 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -8.29 Total: -11.70 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.79 Total: -1.01 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.31 Total: -5.53 kcal Atomic # 14 Polarization: 2.14 SS G_CDS: -5.38 Total: -3.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -5.71 -9.96 -15.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_14598384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.951 kcal (2) G-P(sol) polarization free energy of solvation -5.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds