Wall clock time and date at job start Tue Mar 9 2021 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 116.99969 * 2 1 4 4 C 1.38751 * 120.02693 * 0.02562 * 3 2 1 5 5 C 1.38197 * 120.05254 * 180.02562 * 4 3 2 6 6 C 1.38153 * 120.11294 * 359.94885 * 5 4 3 7 7 C 1.38795 * 120.05335 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.02758 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00130 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47433 * 180.02562 * 9 8 7 11 11 H 1.09004 * 112.84485 * 316.20211 * 10 9 8 12 12 C 1.53784 * 113.68732 * 87.46481 * 10 9 8 13 13 C 1.53786 * 87.07771 * 139.99724 * 12 10 9 14 14 H 1.08995 * 113.68971 * 89.12884 * 13 12 10 15 15 O 1.42905 * 113.61041 * 220.02445 * 13 12 10 16 16 C 1.42904 * 113.99284 * 247.49642 * 15 13 12 17 17 C 1.52991 * 109.47487 * 60.00029 * 16 15 13 18 18 C 1.52999 * 109.47075 * 299.99800 * 16 15 13 19 19 C 1.52996 * 109.46710 * 180.02562 * 16 15 13 20 20 C 1.53773 * 113.61568 * 185.00095 * 10 9 8 21 21 C 1.38616 * 119.94472 * 0.26558 * 7 6 5 22 22 C 1.50692 * 120.05512 * 179.75400 * 21 7 6 23 23 O 1.42902 * 109.47621 * 124.16217 * 22 21 7 24 24 Si 1.86299 * 109.46981 * 244.16256 * 22 21 7 25 25 H 1.09004 * 109.47455 * 300.00060 * 1 2 3 26 26 H 1.09004 * 109.47432 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.97324 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.94392 * 179.97438 * 5 4 3 30 30 H 1.08004 * 119.97195 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47111 * 60.00628 * 9 8 7 32 32 H 1.09005 * 109.47295 * 300.00919 * 9 8 7 33 33 H 1.09002 * 113.61511 * 25.44822 * 12 10 9 34 34 H 1.08994 * 113.61272 * 254.54108 * 12 10 9 35 35 H 1.09006 * 109.47317 * 300.00095 * 17 16 15 36 36 H 1.09002 * 109.47676 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47588 * 59.99675 * 17 16 15 38 38 H 1.08996 * 109.47540 * 180.02562 * 18 16 15 39 39 H 1.09005 * 109.47565 * 300.00178 * 18 16 15 40 40 H 1.09002 * 109.47263 * 60.00366 * 18 16 15 41 41 H 1.08998 * 109.47449 * 299.99544 * 19 16 15 42 42 H 1.09008 * 109.47698 * 60.00005 * 19 16 15 43 43 H 1.09005 * 109.47186 * 179.97438 * 19 16 15 44 44 H 1.09003 * 113.61402 * 105.38908 * 20 10 9 45 45 H 1.09000 * 113.62149 * 334.48495 * 20 10 9 46 46 H 1.09001 * 109.47499 * 4.15892 * 22 21 7 47 47 H 0.96699 * 113.99963 * 294.52965 * 23 22 21 48 48 H 1.48500 * 110.00198 * 294.40602 * 24 22 21 49 49 H 1.48502 * 110.00214 * 55.72781 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9176 3.6065 0.0000 6 6 3.2971 3.6821 0.0000 7 6 4.0569 2.5207 0.0000 8 8 5.4138 2.5957 0.0005 9 6 5.9913 3.9028 0.0005 10 6 7.5168 3.7864 0.0005 11 1 7.8837 3.0313 0.6957 12 6 8.1281 3.6773 -1.4064 13 6 9.2478 4.6052 -0.9062 14 1 10.0886 4.0752 -0.4588 15 8 9.6549 5.5809 -1.8678 16 6 10.9820 5.3907 -2.3625 17 6 11.0833 4.0216 -3.0378 18 6 11.9745 5.4607 -1.2002 19 6 11.3093 6.4866 -3.3786 20 6 8.2378 5.1391 0.1233 21 6 3.4306 1.2841 -0.0056 22 6 4.2531 0.0215 -0.0112 23 8 3.8792 -0.7957 1.0999 24 14 3.9507 -0.9096 -1.5963 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2123 2.3184 0.0014 29 1 1.3281 4.5115 0.0000 30 1 3.7846 4.6459 0.0000 31 1 5.6678 4.4429 0.8903 32 1 5.6683 4.4427 -0.8897 33 1 7.5096 4.1206 -2.1868 34 1 8.4719 2.6736 -1.6564 35 1 10.8503 3.2410 -2.3135 36 1 12.0957 3.8764 -3.4148 37 1 10.3763 3.9717 -3.8658 38 1 12.9868 5.3161 -1.5775 39 1 11.9024 6.4362 -0.7190 40 1 11.7415 4.6802 -0.4759 41 1 10.6024 6.4372 -4.2068 42 1 11.2373 7.4620 -2.8972 43 1 12.3218 6.3419 -3.7557 44 1 8.6703 5.3155 1.1081 45 1 7.6494 5.9821 -0.2389 46 1 5.3102 0.2761 0.0645 47 1 4.0872 -0.4078 1.9610 48 1 2.5430 -1.3796 -1.6486 49 1 4.2379 -0.0352 -2.7617 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_14598384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:12:08 Heat of formation + Delta-G solvation = -97.040428 kcal Electronic energy + Delta-G solvation = -28189.554439 eV Core-core repulsion = 24278.366449 eV Total energy + Delta-G solvation = -3911.187990 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87447 -40.98513 -40.07976 -38.44856 -37.65017 -37.19841 -33.92957 -32.74307 -30.72718 -29.47256 -28.45181 -28.35543 -28.15183 -26.67871 -26.57591 -24.21665 -22.81243 -22.51528 -20.83775 -20.61791 -19.69567 -18.55295 -17.95117 -17.58659 -17.34444 -17.25072 -16.78377 -16.62734 -16.49236 -16.07008 -15.79595 -15.60313 -15.35295 -15.06226 -14.56655 -14.45155 -14.14854 -14.09696 -13.62232 -13.55339 -13.44368 -13.31341 -13.17332 -13.03630 -12.86966 -12.74643 -12.66720 -12.62735 -12.42476 -12.25377 -12.15740 -11.99051 -11.77410 -11.70169 -11.38122 -11.28656 -11.18220 -11.03985 -10.36912 -9.52279 -9.26434 -4.91215 0.10138 0.25758 1.42891 1.59261 1.75380 2.08902 2.49030 2.53553 2.76230 3.44218 3.50953 3.55578 3.74190 3.75894 3.77569 3.89429 3.90513 3.94862 3.97970 4.03698 4.08999 4.13241 4.15630 4.23249 4.26565 4.29972 4.37021 4.44248 4.52547 4.61323 4.61977 4.67081 4.73143 4.76567 4.77235 4.77997 4.84311 4.91101 4.93531 5.00525 5.07638 5.11684 5.12456 5.15757 5.29128 5.30005 5.32633 5.35565 5.41570 6.19572 6.28073 6.41185 6.72086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.160 3.840 4 C -0.255 4.255 5 C -0.035 4.035 6 C -0.252 4.252 7 C 0.170 3.830 8 O -0.316 6.316 9 C 0.068 3.932 10 C -0.102 4.102 11 H 0.110 0.890 12 C -0.151 4.151 13 C 0.060 3.940 14 H 0.102 0.898 15 O -0.382 6.382 16 C 0.098 3.902 17 C -0.174 4.174 18 C -0.177 4.177 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.217 4.217 22 C -0.058 4.058 23 O -0.541 6.541 24 Si 0.799 3.201 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.371 0.629 48 H -0.277 1.277 49 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 1.889 1.326 3.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.229 6.229 3 C 0.114 3.886 4 C -0.274 4.274 5 C -0.053 4.053 6 C -0.271 4.271 7 C 0.123 3.877 8 O -0.229 6.229 9 C -0.006 4.006 10 C -0.121 4.121 11 H 0.129 0.871 12 C -0.189 4.189 13 C 0.002 3.998 14 H 0.119 0.881 15 O -0.302 6.302 16 C 0.060 3.940 17 C -0.232 4.232 18 C -0.234 4.234 19 C -0.197 4.197 20 C -0.159 4.159 21 C -0.219 4.219 22 C -0.167 4.167 23 O -0.347 6.347 24 Si 0.702 3.298 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.131 0.869 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.168 0.832 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.219 0.781 48 H -0.203 1.203 49 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges 1.564 1.258 0.064 2.008 hybrid contribution -0.616 1.604 0.902 1.941 sum 0.948 2.862 0.967 3.166 Atomic orbital electron populations 1.23363 0.76729 1.05402 1.02374 1.86223 1.22995 1.26082 1.87567 1.18748 0.91203 0.85414 0.93251 1.21469 1.01327 0.91880 1.12705 1.21142 0.93915 0.97993 0.92279 1.21457 0.95280 0.97848 1.12509 1.18515 0.83000 0.92760 0.93397 1.86008 1.16448 1.32687 1.87795 1.23031 0.93221 0.81878 1.02476 1.22284 0.91435 0.99568 0.98772 0.87136 1.23611 0.98197 1.00371 0.96673 1.23673 0.95567 0.90437 0.90098 0.88055 1.88012 1.31345 1.51855 1.58950 1.21670 0.82451 0.95851 0.94073 1.22445 1.03096 0.96383 1.01228 1.22448 0.99956 1.02625 0.98358 1.21797 1.02341 0.97647 0.97912 1.23197 0.96708 0.96280 0.99684 1.19056 0.91802 0.94761 1.16265 1.24862 0.98938 0.92267 1.00616 1.86704 1.86098 1.45698 1.16156 0.93532 0.82141 0.83669 0.70441 0.91051 0.91887 0.86933 0.83305 0.82553 0.83227 0.90249 0.91343 0.90306 0.90836 0.92010 0.90567 0.92594 0.90450 0.92118 0.91745 0.92522 0.92229 0.89759 0.89224 0.89183 0.89880 0.78111 1.20307 1.22041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -2.94 7.33 -81.40 -0.60 -3.54 16 3 C 0.16 1.40 6.11 22.49 0.14 1.54 16 4 C -0.26 -1.12 9.04 22.38 0.20 -0.91 16 5 C -0.04 -0.07 10.03 22.24 0.22 0.15 16 6 C -0.25 -0.83 9.04 22.38 0.20 -0.63 16 7 C 0.17 1.14 6.66 22.49 0.15 1.29 16 8 O -0.32 -1.50 8.91 -92.36 -0.82 -2.33 16 9 C 0.07 -0.04 4.58 71.98 0.33 0.29 16 10 C -0.10 0.22 4.01 -10.27 -0.04 0.18 16 11 H 0.11 -0.33 8.14 -2.38 -0.02 -0.35 16 12 C -0.15 0.01 7.47 31.12 0.23 0.24 16 13 C 0.06 -0.04 2.82 31.12 0.09 0.05 16 14 H 0.10 -0.27 5.54 -2.39 -0.01 -0.28 16 15 O -0.38 -1.34 10.00 -148.98 -1.49 -2.83 16 16 C 0.10 0.03 1.11 -10.80 -0.01 0.02 16 17 C -0.17 0.18 8.38 71.98 0.60 0.78 16 18 C -0.18 0.37 8.38 71.98 0.60 0.97 16 19 C -0.14 0.04 8.84 71.98 0.64 0.68 16 20 C -0.12 0.32 7.47 31.12 0.23 0.56 16 21 C -0.22 -1.95 4.50 -19.68 -0.09 -2.04 16 22 C -0.06 -0.43 2.63 71.23 0.19 -0.24 16 23 O -0.54 -3.97 11.86 -137.98 -1.64 -5.60 16 24 Si 0.80 5.82 31.66 68.60 2.17 7.99 16 25 H 0.07 -0.13 7.66 -2.38 -0.02 -0.15 16 26 H 0.06 -0.05 7.66 -2.38 -0.02 -0.07 16 27 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.15 -0.02 6.29 -2.91 -0.02 -0.04 16 29 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 30 H 0.15 -0.19 6.29 -2.91 -0.02 -0.21 16 31 H 0.08 -0.24 7.66 -2.39 -0.02 -0.26 16 32 H 0.07 -0.06 7.37 -2.38 -0.02 -0.08 16 33 H 0.08 0.19 7.90 -2.39 -0.02 0.17 16 34 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.06 -0.10 7.02 -2.38 -0.02 -0.11 16 36 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.06 -0.20 6.24 -2.39 -0.01 -0.21 16 41 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.09 -0.16 8.10 -2.39 -0.02 -0.18 16 46 H 0.08 0.44 6.83 -2.39 -0.02 0.43 16 47 H 0.37 0.65 9.11 -74.06 -0.67 -0.02 16 48 H -0.28 -3.61 6.46 99.48 0.64 -2.97 16 49 H -0.29 -3.50 7.11 99.48 0.71 -2.79 16 Total: 0.00 -14.16 385.49 2.65 -11.51 By element: Atomic # 1 Polarization: -9.48 SS G_CDS: 0.23 Total: -9.26 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 4.80 Total: 4.05 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -4.55 Total: -14.30 kcal Atomic # 14 Polarization: 5.82 SS G_CDS: 2.17 Total: 7.99 kcal Total: -14.16 2.65 -11.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_14598384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.529 kcal (2) G-P(sol) polarization free energy of solvation -14.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds