Wall clock time and date at job start Tue Mar 9 2021 14:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 117.00014 * 2 1 4 4 C 1.38746 * 120.02946 * 359.97073 * 3 2 1 5 5 C 1.38198 * 120.05677 * 180.02562 * 4 3 2 6 6 C 1.38145 * 120.10812 * 359.76974 * 5 4 3 7 7 C 1.38801 * 120.05546 * 0.50475 * 6 5 4 8 8 O 1.35898 * 120.02705 * 179.74193 * 7 6 5 9 9 C 1.42899 * 117.00112 * 359.72871 * 8 7 6 10 10 C 1.52998 * 109.46962 * 179.97438 * 9 8 7 11 11 H 1.09001 * 112.85052 * 43.80860 * 10 9 8 12 12 C 1.53784 * 113.61306 * 175.00619 * 10 9 8 13 13 C 1.53776 * 87.08036 * 140.06657 * 12 10 9 14 14 H 1.09005 * 113.61139 * 219.92766 * 13 12 10 15 15 N 1.46496 * 113.61867 * 89.11701 * 13 12 10 16 16 C 1.34777 * 120.00561 * 154.99567 * 15 13 12 17 17 O 1.21511 * 119.99859 * 359.72516 * 16 15 13 18 18 O 1.34635 * 119.99986 * 180.02562 * 16 15 13 19 19 C 1.45197 * 116.99639 * 179.72777 * 18 16 15 20 20 C 1.53002 * 109.47387 * 59.99782 * 19 18 16 21 21 C 1.53003 * 109.47090 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47234 * 299.99615 * 19 18 16 23 23 C 1.53770 * 87.08333 * 334.56489 * 13 12 10 24 24 C 1.38615 * 119.94355 * 359.47424 * 7 6 5 25 25 C 1.50694 * 120.05491 * 180.29582 * 24 7 6 26 26 O 1.42908 * 109.46896 * 235.23229 * 25 24 7 27 27 Si 1.86296 * 109.47366 * 115.23148 * 25 24 7 28 28 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47349 * 300.00600 * 1 2 3 30 30 H 1.09003 * 109.46724 * 60.00403 * 1 2 3 31 31 H 1.08001 * 119.97110 * 0.02625 * 4 3 2 32 32 H 1.08004 * 119.94332 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.97352 * 180.25894 * 6 5 4 34 34 H 1.09002 * 109.46782 * 60.00169 * 9 8 7 35 35 H 1.08990 * 109.47436 * 300.00101 * 9 8 7 36 36 H 1.08995 * 113.61636 * 25.50993 * 12 10 9 37 37 H 1.08997 * 113.68545 * 254.62591 * 12 10 9 38 38 H 0.97004 * 120.00084 * 334.99588 * 15 13 12 39 39 H 1.08991 * 109.47189 * 60.00230 * 20 19 18 40 40 H 1.09000 * 109.46887 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.46974 * 299.99783 * 20 19 18 42 42 H 1.09004 * 109.47103 * 59.99983 * 21 19 18 43 43 H 1.09000 * 109.47289 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47175 * 299.99400 * 21 19 18 45 45 H 1.08996 * 109.47180 * 60.00185 * 22 19 18 46 46 H 1.09000 * 109.47535 * 180.02562 * 22 19 18 47 47 H 1.09004 * 109.47160 * 300.00139 * 22 19 18 48 48 H 1.08998 * 113.62040 * 139.98375 * 23 13 12 49 49 H 1.09002 * 113.61457 * 270.88579 * 23 13 12 50 50 H 1.09003 * 109.47274 * 355.22416 * 25 24 7 51 51 H 0.96703 * 114.00047 * 65.44049 * 26 25 24 52 52 H 1.48499 * 109.99562 * 305.62094 * 27 25 24 53 53 H 1.48499 * 110.00069 * 66.94032 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2909 2.3749 -0.0006 5 6 1.9178 3.6066 -0.0011 6 6 3.2971 3.6821 0.0037 7 6 4.0570 2.5206 -0.0014 8 8 5.4139 2.5956 -0.0019 9 6 5.9914 3.9027 -0.0030 10 6 7.5169 3.7862 -0.0028 11 1 7.8839 3.0306 -0.6974 12 6 8.2380 5.1389 -0.1266 13 6 9.2479 4.6058 0.9034 14 1 9.5596 5.3509 1.6353 15 7 10.3770 3.8914 0.3028 16 6 11.5505 3.8109 0.9607 17 8 11.6735 4.3353 2.0500 18 8 12.5884 3.1548 0.4084 19 6 13.8232 3.1137 1.1710 20 6 13.5704 2.4265 2.5145 21 6 14.8797 2.3305 0.3891 22 6 14.3208 4.5400 1.4134 23 6 8.1283 3.6783 1.4042 24 6 3.4306 1.2840 -0.0004 25 6 4.2532 0.0214 0.0008 26 8 3.8695 -0.7981 -1.1054 27 14 3.9647 -0.9063 1.5903 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2124 2.3184 -0.0007 32 1 1.3282 4.5115 -0.0012 33 1 3.7847 4.6458 0.0075 34 1 5.6685 4.4433 0.8868 35 1 5.6680 4.4421 -0.8931 36 1 7.6495 5.9821 0.2349 37 1 8.6708 5.3159 -1.1112 38 1 10.2802 3.4762 -0.5686 39 1 13.2161 1.4104 2.3419 40 1 14.4974 2.3961 3.0871 41 1 12.8177 2.9841 3.0718 42 1 15.0600 2.8197 -0.5682 43 1 15.8069 2.3000 0.9614 44 1 14.5252 1.3143 0.2168 45 1 13.5680 5.0976 1.9707 46 1 15.2480 4.5092 1.9856 47 1 14.5009 5.0296 0.4563 48 1 8.4720 2.6748 1.6551 49 1 7.5097 4.1222 2.1843 50 1 5.3096 0.2758 -0.0849 51 1 4.0696 -0.4118 -1.9691 52 1 4.2307 -0.0195 2.7513 53 1 2.5665 -1.4041 1.6413 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_215219_15734082.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:13:11 Heat of formation + Delta-G solvation = -128.875507 kcal Electronic energy + Delta-G solvation = -33692.151627 eV Core-core repulsion = 29111.711302 eV Total energy + Delta-G solvation = -4580.440325 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.197 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.01621 -41.78502 -40.68276 -39.80970 -38.02834 -37.66640 -37.22073 -35.37598 -34.12836 -32.70940 -30.69580 -29.39144 -28.38046 -28.32738 -28.30319 -26.76519 -26.59498 -24.86089 -23.47779 -22.79786 -22.40236 -21.17917 -20.30583 -19.70550 -19.31391 -18.54419 -17.76941 -17.61336 -17.36176 -17.30565 -17.16393 -16.77274 -16.61109 -16.49730 -16.05813 -15.67727 -15.59243 -15.42857 -15.16790 -15.08136 -14.77236 -14.41572 -14.23865 -14.00918 -13.77848 -13.54002 -13.37137 -13.30893 -13.21340 -13.10271 -12.93243 -12.88039 -12.84695 -12.58716 -12.44666 -12.37549 -12.33820 -12.13812 -11.90756 -11.77544 -11.67114 -11.41086 -11.31748 -11.19890 -11.13708 -11.03377 -10.21035 -9.50124 -9.23918 -4.91470 0.12280 0.28257 1.11371 1.42521 1.59207 1.70175 1.79304 2.08620 2.53949 2.56071 3.09289 3.38378 3.47839 3.54327 3.72884 3.74633 3.75573 3.78440 3.79883 3.93021 3.93259 3.98360 4.04734 4.17087 4.24276 4.26723 4.31428 4.39215 4.41567 4.45132 4.48588 4.60150 4.60256 4.61391 4.71999 4.73390 4.74901 4.75473 4.81821 4.86668 4.88104 4.97430 5.02294 5.05673 5.10098 5.14765 5.16181 5.25943 5.30299 5.31878 5.40387 5.46886 5.59964 6.22949 6.30636 6.35640 6.72539 7.31067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.159 3.841 4 C -0.257 4.257 5 C -0.035 4.035 6 C -0.250 4.250 7 C 0.171 3.829 8 O -0.318 6.318 9 C 0.062 3.938 10 C -0.103 4.103 11 H 0.104 0.896 12 C -0.117 4.117 13 C 0.130 3.870 14 H 0.096 0.904 15 N -0.684 5.684 16 C 0.646 3.354 17 O -0.593 6.593 18 O -0.369 6.369 19 C 0.127 3.873 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.180 4.180 23 C -0.149 4.149 24 C -0.218 4.218 25 C -0.056 4.056 26 O -0.542 6.542 27 Si 0.795 3.205 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.371 0.629 52 H -0.292 1.292 53 H -0.278 1.278 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 2.648 -3.365 4.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.113 3.887 4 C -0.276 4.276 5 C -0.053 4.053 6 C -0.269 4.269 7 C 0.125 3.875 8 O -0.231 6.231 9 C -0.012 4.012 10 C -0.121 4.121 11 H 0.122 0.878 12 C -0.155 4.155 13 C 0.026 3.974 14 H 0.114 0.886 15 N -0.343 5.343 16 C 0.399 3.601 17 O -0.484 6.484 18 O -0.284 6.284 19 C 0.091 3.909 20 C -0.238 4.238 21 C -0.195 4.195 22 C -0.237 4.237 23 C -0.188 4.188 24 C -0.220 4.220 25 C -0.165 4.165 26 O -0.348 6.348 27 Si 0.698 3.302 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.102 0.898 51 H 0.219 0.781 52 H -0.220 1.220 53 H -0.205 1.205 Dipole moment (debyes) X Y Z Total from point charges -0.131 2.088 -1.628 2.651 hybrid contribution -0.782 1.455 -1.057 1.961 sum -0.913 3.543 -2.686 4.539 Atomic orbital electron populations 1.23355 0.76757 1.05351 1.02363 1.86220 1.22977 1.26242 1.87613 1.18760 0.91248 0.85365 0.93329 1.21468 1.01278 0.91987 1.12850 1.21151 0.94070 0.97871 0.92230 1.21478 0.95135 0.97939 1.12317 1.18499 0.83089 0.92657 0.93275 1.86023 1.16320 1.33019 1.87762 1.23148 0.93155 0.81875 1.03004 1.22618 0.91613 0.99680 0.98237 0.87757 1.23314 0.95312 0.96611 1.00222 1.21834 0.83929 0.94533 0.97098 0.88609 1.44371 1.08553 1.58246 1.23147 1.18319 0.81576 0.77552 0.82603 1.90907 1.83780 1.51696 1.21971 1.86311 1.21508 1.70149 1.50413 1.22359 0.80014 0.97056 0.91449 1.22475 1.04105 1.00663 0.96521 1.21895 0.96657 1.00070 1.00869 1.22473 1.02921 0.95404 1.02900 1.23584 0.97271 1.00507 0.97392 1.19057 0.91744 0.94827 1.16393 1.24819 0.98859 0.92251 1.00601 1.86708 1.86099 1.45725 1.16222 0.93564 0.82380 0.83556 0.70666 0.87020 0.91890 0.91056 0.83487 0.82521 0.82711 0.90541 0.89920 0.86265 0.88747 0.74613 0.91975 0.89445 0.91832 0.91118 0.88302 0.91193 0.91772 0.89471 0.91862 0.91987 0.88188 0.89840 0.78090 1.21956 1.20491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 113.37 1.11 1.13 16 2 O -0.32 -2.87 7.37 -81.05 -0.60 -3.47 16 3 C 0.16 1.28 6.11 22.49 0.14 1.42 16 4 C -0.26 -0.90 9.04 22.38 0.20 -0.70 16 5 C -0.04 -0.02 10.04 22.24 0.22 0.20 16 6 C -0.25 -0.26 9.04 22.38 0.20 -0.06 16 7 C 0.17 0.83 6.66 22.49 0.15 0.98 16 8 O -0.32 -0.77 8.91 -92.40 -0.82 -1.60 16 9 C 0.06 -0.29 4.58 71.98 0.33 0.04 16 10 C -0.10 0.61 3.88 -10.27 -0.04 0.57 16 11 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 12 C -0.12 0.98 7.39 31.12 0.23 1.21 16 13 C 0.13 -0.31 4.33 45.51 0.20 -0.11 16 14 H 0.10 0.11 7.46 -2.38 -0.02 0.09 16 15 N -0.68 0.12 5.27 -567.64 -2.99 -2.87 16 16 C 0.65 4.19 8.06 129.79 1.05 5.24 16 17 O -0.59 -7.06 11.48 19.80 0.23 -6.83 16 18 O -0.37 -2.00 9.94 -55.44 -0.55 -2.55 16 19 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 20 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 21 C -0.14 0.29 8.85 71.98 0.64 0.92 16 22 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 23 C -0.15 0.37 7.43 31.12 0.23 0.61 16 24 C -0.22 -1.74 4.49 -19.68 -0.09 -1.83 16 25 C -0.06 -0.39 2.63 71.23 0.19 -0.20 16 26 O -0.54 -3.82 11.84 -137.58 -1.63 -5.45 16 27 Si 0.80 5.75 31.65 68.60 2.17 7.93 16 28 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.06 -0.07 7.66 -2.39 -0.02 -0.09 16 30 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16 31 H 0.15 -0.10 6.29 -2.91 -0.02 -0.12 16 32 H 0.16 -0.83 8.06 -2.91 -0.02 -0.86 16 33 H 0.16 -0.70 6.29 -2.91 -0.02 -0.72 16 34 H 0.08 -0.47 7.35 -2.39 -0.02 -0.49 16 35 H 0.08 -0.60 7.67 -2.39 -0.02 -0.62 16 36 H 0.12 -1.33 8.10 -2.39 -0.02 -1.35 16 37 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.42 -1.88 8.81 -92.71 -0.82 -2.70 16 39 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.06 0.57 5.88 -2.39 -0.01 0.55 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 44 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 46 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.10 -0.34 7.90 -2.39 -0.02 -0.36 16 50 H 0.08 0.40 6.83 -2.39 -0.02 0.38 16 51 H 0.37 0.49 9.11 -74.06 -0.67 -0.19 16 52 H -0.29 -3.44 7.11 99.48 0.71 -2.74 16 53 H -0.28 -3.68 6.51 99.48 0.65 -3.03 16 Total: 0.00 -20.46 420.81 1.17 -19.29 By element: Atomic # 1 Polarization: -13.67 SS G_CDS: -0.58 Total: -14.25 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.95 Total: 9.81 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -2.99 Total: -2.87 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -3.37 Total: -19.89 kcal Atomic # 14 Polarization: 5.75 SS G_CDS: 2.17 Total: 7.93 kcal Total: -20.46 1.17 -19.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_215219_15734082.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.588 kcal (2) G-P(sol) polarization free energy of solvation -20.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds